Wall clock time and date at job start Tue Mar 31 2020 12:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35650 * 117.00054 * 2 1 4 4 C 1.39336 * 120.54257 * 359.97438 * 3 2 1 5 5 C 1.38304 * 118.43965 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.27381 * 180.02562 * 5 4 3 7 7 C 1.38764 * 119.44523 * 0.02562 * 5 4 3 8 8 N 1.31376 * 121.06736 * 359.74032 * 7 5 4 9 9 C 1.32860 * 121.69151 * 0.52807 * 8 7 5 10 10 C 1.47838 * 119.77931 * 179.75277 * 9 8 7 11 11 O 1.21555 * 119.99901 * 186.20660 * 10 9 8 12 12 N 1.34775 * 119.99957 * 6.20770 * 10 9 8 13 13 C 1.46504 * 119.99918 * 5.24741 * 12 10 9 14 14 C 1.46500 * 120.00178 * 185.25415 * 12 10 9 15 15 C 1.52998 * 109.47027 * 83.11603 * 14 12 10 16 16 H 1.09001 * 112.96617 * 309.34049 * 15 14 12 17 17 C 1.53952 * 113.76754 * 177.66761 * 15 14 12 18 18 C 1.53943 * 86.28953 * 222.09174 * 17 15 14 19 19 N 1.47576 * 113.77198 * 81.17331 * 15 14 12 20 20 C 1.36945 * 134.49041 * 318.94194 * 19 15 14 21 21 H 1.08000 * 119.99402 * 332.61683 * 20 19 15 22 22 C 1.38810 * 119.99849 * 152.61977 * 20 19 15 23 23 N 1.31619 * 119.99657 * 168.92611 * 22 20 19 24 24 Si 1.86795 * 120.00322 * 348.91960 * 22 20 19 25 25 H 1.48499 * 109.47022 * 84.64576 * 24 22 20 26 26 H 1.48500 * 109.47152 * 204.64990 * 24 22 20 27 27 H 1.48503 * 109.47115 * 324.64696 * 24 22 20 28 28 H 1.09005 * 109.47363 * 300.00348 * 1 2 3 29 29 H 1.09005 * 109.47089 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.77630 * 0.04844 * 4 3 2 32 32 H 1.08999 * 109.47866 * 90.00066 * 6 5 4 33 33 H 1.09001 * 109.47060 * 210.00197 * 6 5 4 34 34 H 1.09000 * 109.47427 * 329.99933 * 6 5 4 35 35 H 1.07997 * 119.46353 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47644 * 275.05895 * 13 12 10 37 37 H 1.09001 * 109.47123 * 35.06038 * 13 12 10 38 38 H 1.09005 * 109.46939 * 155.05707 * 13 12 10 39 39 H 1.08994 * 109.47045 * 203.12186 * 14 12 10 40 40 H 1.09006 * 109.46354 * 323.12056 * 14 12 10 41 41 H 1.09003 * 113.74088 * 336.43344 * 17 15 14 42 42 H 1.09000 * 113.73997 * 107.63698 * 17 15 14 43 43 H 1.09002 * 113.77127 * 137.90103 * 18 17 15 44 44 H 1.08996 * 113.77180 * 269.19239 * 18 17 15 45 45 H 0.97001 * 120.00276 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 -0.0005 5 6 1.9697 3.5928 -0.0011 6 6 1.2021 4.8896 -0.0011 7 6 3.3573 3.6011 -0.0016 8 7 4.0420 2.4798 0.0035 9 6 3.4409 1.2950 -0.0010 10 6 4.2531 0.0596 -0.0005 11 8 3.7129 -1.0229 -0.1185 12 7 5.5924 0.1337 0.1308 13 6 6.2328 1.4261 0.3880 14 6 6.4078 -1.0779 0.0161 15 6 6.6750 -1.3750 -1.4608 16 1 5.7682 -1.3742 -2.0656 17 6 7.5752 -2.6020 -1.6939 18 6 8.2734 -1.7590 -2.7764 19 7 7.7779 -0.5817 -2.0371 20 6 8.1801 0.7229 -1.9292 21 1 7.4582 1.4933 -1.7018 22 6 9.5154 1.0549 -2.1121 23 7 9.8700 2.3173 -2.2258 24 14 10.8091 -0.2899 -2.1966 25 1 10.8889 -0.8134 -3.5840 26 1 12.1279 0.2663 -1.8008 27 1 10.4390 -1.3917 -1.2723 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2175 2.3527 -0.0002 32 1 1.0174 5.2026 1.0265 33 1 1.7827 5.6555 -0.5153 34 1 0.2510 4.7488 -0.5145 35 1 3.8829 4.5445 -0.0024 36 1 6.4007 1.9429 -0.5569 37 1 5.5867 2.0316 1.0235 38 1 7.1875 1.2651 0.8887 39 1 7.3552 -0.9286 0.5339 40 1 5.8766 -1.9171 0.4653 41 1 8.2153 -2.8441 -0.8455 42 1 7.0429 -3.4687 -2.0857 43 1 9.3593 -1.8537 -2.7746 44 1 7.8384 -1.8714 -3.7694 45 1 10.8032 2.5494 -2.3533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:37 Heat of formation + Delta-G solvation = 52.923358 kcal Electronic energy + Delta-G solvation = -27802.156181 eV Core-core repulsion = 24016.679568 eV Total energy + Delta-G solvation = -3785.476613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00126 -39.12221 -38.30858 -37.81748 -34.80166 -33.76704 -32.21435 -31.02097 -29.15097 -28.32636 -27.92296 -27.04553 -25.74254 -23.64772 -23.18864 -22.90450 -22.04464 -19.79238 -18.91772 -17.67482 -17.44252 -17.09941 -16.70743 -16.06496 -15.64131 -15.33267 -14.96533 -14.80810 -14.33149 -14.19083 -13.94287 -13.77984 -13.39825 -13.17311 -12.94325 -12.81611 -12.67735 -12.39805 -12.31562 -12.10425 -11.78019 -11.56612 -11.46091 -11.29137 -11.12461 -10.97334 -10.76737 -10.32324 -10.20657 -9.75950 -9.63704 -9.58802 -9.24437 -9.03573 -8.55502 -8.47078 -7.89196 -6.85642 -5.84697 -3.22796 0.67770 1.17925 3.03236 3.05395 3.40330 3.49101 3.50847 3.55051 3.95065 4.28974 4.44976 4.58061 4.62199 4.77361 4.80456 4.83528 4.87911 4.93781 5.23885 5.27353 5.32577 5.34149 5.39382 5.46491 5.67476 5.71039 5.84336 5.94381 5.96719 6.05121 6.18258 6.22362 6.25946 6.31503 6.46358 6.52291 6.56015 6.57699 6.93328 7.04462 7.11921 7.27679 7.53025 7.79521 8.01346 8.45611 8.68782 8.84555 9.74756 10.48426 11.31693 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.004084 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.915038 B = 6854.510816 C = 8095.540441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.272 6.272 3 C 0.137 3.863 4 C -0.183 4.183 5 C -0.079 4.079 6 C -0.113 4.113 7 C 0.053 3.947 8 N -0.398 5.398 9 C 0.045 3.955 10 C 0.565 3.435 11 O -0.533 6.533 12 N -0.580 5.580 13 C 0.094 3.906 14 C 0.121 3.879 15 C 0.134 3.866 16 H 0.056 0.944 17 C -0.147 4.147 18 C 0.097 3.903 19 N -0.617 5.617 20 C -0.227 4.227 21 H 0.099 0.901 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.892 3.108 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.164 0.836 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.012 1.055 7.070 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.087 3.913 4 C -0.209 4.209 5 C -0.081 4.081 6 C -0.170 4.170 7 C -0.107 4.107 8 N -0.109 5.109 9 C -0.094 4.094 10 C 0.351 3.649 11 O -0.410 6.410 12 N -0.310 5.310 13 C -0.048 4.048 14 C -0.002 4.002 15 C 0.027 3.973 16 H 0.073 0.927 17 C -0.186 4.186 18 C -0.027 4.027 19 N -0.346 5.346 20 C -0.354 4.354 21 H 0.116 0.884 22 C -0.175 4.175 23 N -0.562 5.562 24 Si 0.725 3.275 25 H -0.217 1.217 26 H -0.233 1.233 27 H -0.198 1.198 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.181 0.819 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.065 0.593 7.028 19.393 hybrid contribution -0.271 -0.298 -0.380 0.554 sum -18.336 0.296 6.647 19.506 Atomic orbital electron populations 1.23177 0.78974 1.04431 1.00980 1.86434 1.20526 1.24641 1.86561 1.20024 0.92269 0.85491 0.93554 1.21546 1.00613 0.91329 1.07422 1.20977 0.95330 0.95597 0.96234 1.20797 0.99800 0.93578 1.02874 1.22798 0.90479 0.97037 1.00407 1.68332 1.38066 0.97290 1.07189 1.20823 0.88428 0.93264 1.06847 1.17599 0.82105 0.87021 0.78189 1.90771 1.71555 1.27811 1.50830 1.47595 1.05051 1.10186 1.68145 1.22285 0.96519 0.83203 1.02809 1.21847 0.94489 0.86293 0.97622 1.22672 0.92567 0.89188 0.92873 0.92683 1.23596 0.98950 0.96275 0.99747 1.22819 0.97628 0.87730 0.94565 1.46285 1.31406 1.07046 1.49816 1.18883 0.92409 0.80776 1.43297 0.88384 1.25065 0.96784 0.95580 1.00032 1.69747 1.17098 1.15727 1.53663 0.86717 0.80856 0.82120 0.77829 1.21717 1.23333 1.19792 0.92760 0.92660 0.87808 0.84007 0.90430 0.90484 0.91254 0.81863 0.90374 0.90781 0.92072 0.89682 0.90752 0.90291 0.92213 0.93825 0.94171 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 101.05 0.99 1.17 16 2 O -0.27 -4.03 8.58 -40.50 -0.35 -4.38 16 3 C 0.14 2.03 6.71 -38.56 -0.26 1.77 16 4 C -0.18 -2.02 8.80 -39.15 -0.34 -2.36 16 5 C -0.08 -0.82 5.90 -104.41 -0.62 -1.43 16 6 C -0.11 -0.73 10.03 36.00 0.36 -0.37 16 7 C 0.05 0.67 10.85 -17.55 -0.19 0.48 16 8 N -0.40 -6.44 6.15 -9.71 -0.06 -6.50 16 9 C 0.05 0.79 6.58 -82.88 -0.55 0.24 16 10 C 0.56 11.25 7.58 -12.33 -0.09 11.16 16 11 O -0.53 -11.50 14.83 -16.54 -0.25 -11.75 16 12 N -0.58 -11.48 2.89 -182.69 -0.53 -12.00 16 13 C 0.09 1.81 8.05 59.85 0.48 2.29 16 14 C 0.12 2.36 5.29 -4.04 -0.02 2.34 16 15 C 0.13 2.84 4.49 -66.86 -0.30 2.54 16 16 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.15 -2.76 7.86 -25.80 -0.20 -2.97 16 18 C 0.10 2.16 7.52 -2.98 -0.02 2.13 16 19 N -0.62 -15.24 3.19 -170.75 -0.55 -15.79 16 20 C -0.23 -6.33 10.17 -15.06 -0.15 -6.48 16 21 H 0.10 2.88 5.08 -52.49 -0.27 2.61 16 22 C 0.02 0.68 5.50 -17.43 -0.10 0.59 16 23 N -0.92 -28.09 13.97 55.49 0.78 -27.31 16 24 Si 0.89 23.04 24.74 -169.99 -4.21 18.84 16 25 H -0.29 -7.45 7.03 56.52 0.40 -7.05 16 26 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.27 -6.77 6.77 56.52 0.38 -6.38 16 28 H 0.05 0.37 7.70 -51.93 -0.40 -0.03 16 29 H 0.05 0.40 7.70 -51.93 -0.40 0.00 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.14 1.11 6.46 -52.48 -0.34 0.77 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.08 1.73 5.51 -51.93 -0.29 1.45 16 37 H 0.07 1.29 5.72 -51.93 -0.30 0.99 16 38 H 0.06 1.19 7.78 -51.93 -0.40 0.78 16 39 H 0.08 1.67 7.77 -51.93 -0.40 1.27 16 40 H 0.07 1.36 7.57 -51.93 -0.39 0.96 16 41 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.04 1.02 3.69 -51.93 -0.19 0.82 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -35.02 356.76 -7.12 -42.14 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.34 Total: 0.28 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -1.01 Total: 11.09 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.36 Total: -61.60 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.59 Total: -16.12 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.21 Total: 18.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.02 -7.12 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.064 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds