Wall clock time and date at job start Tue Mar 31 2020 12:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35650 * 117.00054 * 2 1 4 4 C 1.39336 * 120.54257 * 359.97438 * 3 2 1 5 5 C 1.38304 * 118.43965 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.27381 * 180.02562 * 5 4 3 7 7 C 1.38764 * 119.44523 * 0.02562 * 5 4 3 8 8 N 1.31376 * 121.06736 * 359.74032 * 7 5 4 9 9 C 1.32860 * 121.69151 * 0.52807 * 8 7 5 10 10 C 1.47838 * 119.77931 * 179.75277 * 9 8 7 11 11 O 1.21555 * 119.99901 * 186.20660 * 10 9 8 12 12 N 1.34775 * 119.99957 * 6.20770 * 10 9 8 13 13 C 1.46504 * 119.99918 * 5.24741 * 12 10 9 14 14 C 1.46500 * 120.00178 * 185.25415 * 12 10 9 15 15 C 1.52998 * 109.47027 * 83.11603 * 14 12 10 16 16 H 1.09001 * 112.96617 * 309.34049 * 15 14 12 17 17 C 1.53952 * 113.76754 * 177.66761 * 15 14 12 18 18 C 1.53943 * 86.28953 * 222.09174 * 17 15 14 19 19 N 1.47576 * 113.77198 * 81.17331 * 15 14 12 20 20 C 1.36945 * 134.49041 * 318.94194 * 19 15 14 21 21 H 1.08000 * 119.99402 * 332.61683 * 20 19 15 22 22 C 1.38810 * 119.99849 * 152.61977 * 20 19 15 23 23 N 1.31619 * 119.99657 * 168.92611 * 22 20 19 24 24 Si 1.86795 * 120.00322 * 348.91960 * 22 20 19 25 25 H 1.48499 * 109.47022 * 84.64576 * 24 22 20 26 26 H 1.48500 * 109.47152 * 204.64990 * 24 22 20 27 27 H 1.48503 * 109.47115 * 324.64696 * 24 22 20 28 28 H 1.09005 * 109.47363 * 300.00348 * 1 2 3 29 29 H 1.09005 * 109.47089 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.77630 * 0.04844 * 4 3 2 32 32 H 1.08999 * 109.47866 * 90.00066 * 6 5 4 33 33 H 1.09001 * 109.47060 * 210.00197 * 6 5 4 34 34 H 1.09000 * 109.47427 * 329.99933 * 6 5 4 35 35 H 1.07997 * 119.46353 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47644 * 275.05895 * 13 12 10 37 37 H 1.09001 * 109.47123 * 35.06038 * 13 12 10 38 38 H 1.09005 * 109.46939 * 155.05707 * 13 12 10 39 39 H 1.08994 * 109.47045 * 203.12186 * 14 12 10 40 40 H 1.09006 * 109.46354 * 323.12056 * 14 12 10 41 41 H 1.09003 * 113.74088 * 336.43344 * 17 15 14 42 42 H 1.09000 * 113.73997 * 107.63698 * 17 15 14 43 43 H 1.09002 * 113.77127 * 137.90103 * 18 17 15 44 44 H 1.08996 * 113.77180 * 269.19239 * 18 17 15 45 45 H 0.97001 * 120.00276 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 -0.0005 5 6 1.9697 3.5928 -0.0011 6 6 1.2021 4.8896 -0.0011 7 6 3.3573 3.6011 -0.0016 8 7 4.0420 2.4798 0.0035 9 6 3.4409 1.2950 -0.0010 10 6 4.2531 0.0596 -0.0005 11 8 3.7129 -1.0229 -0.1185 12 7 5.5924 0.1337 0.1308 13 6 6.2328 1.4261 0.3880 14 6 6.4078 -1.0779 0.0161 15 6 6.6750 -1.3750 -1.4608 16 1 5.7682 -1.3742 -2.0656 17 6 7.5752 -2.6020 -1.6939 18 6 8.2734 -1.7590 -2.7764 19 7 7.7779 -0.5817 -2.0371 20 6 8.1801 0.7229 -1.9292 21 1 7.4582 1.4933 -1.7018 22 6 9.5154 1.0549 -2.1121 23 7 9.8700 2.3173 -2.2258 24 14 10.8091 -0.2899 -2.1966 25 1 10.8889 -0.8134 -3.5840 26 1 12.1279 0.2663 -1.8008 27 1 10.4390 -1.3917 -1.2723 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2175 2.3527 -0.0002 32 1 1.0174 5.2026 1.0265 33 1 1.7827 5.6555 -0.5153 34 1 0.2510 4.7488 -0.5145 35 1 3.8829 4.5445 -0.0024 36 1 6.4007 1.9429 -0.5569 37 1 5.5867 2.0316 1.0235 38 1 7.1875 1.2651 0.8887 39 1 7.3552 -0.9286 0.5339 40 1 5.8766 -1.9171 0.4653 41 1 8.2153 -2.8441 -0.8455 42 1 7.0429 -3.4687 -2.0857 43 1 9.3593 -1.8537 -2.7746 44 1 7.8384 -1.8714 -3.7694 45 1 10.8032 2.5494 -2.3533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:36 Heat of formation + Delta-G solvation = 29.757715 kcal Electronic energy + Delta-G solvation = -27803.160719 eV Core-core repulsion = 24016.679568 eV Total energy + Delta-G solvation = -3786.481151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.09194 -40.62182 -39.50586 -39.26537 -36.32834 -34.73497 -34.35487 -32.01755 -30.81847 -29.91000 -28.89308 -28.09991 -27.22055 -25.19268 -24.81333 -24.15401 -23.14654 -21.21696 -20.65315 -19.08546 -18.62406 -18.58321 -17.98797 -17.38727 -17.12757 -16.76583 -16.60771 -16.08151 -15.73132 -15.27107 -15.08430 -15.00569 -14.73233 -14.68919 -14.46336 -14.24980 -13.86863 -13.58851 -13.51808 -13.24381 -13.07129 -12.94421 -12.83327 -12.73600 -12.61223 -12.37273 -12.32723 -12.12318 -11.98421 -11.47066 -11.25491 -11.15560 -10.68434 -10.50579 -10.25046 -9.67987 -9.35237 -8.87415 -8.06438 -5.42042 -0.37173 0.21895 1.33610 1.40086 1.51047 1.73683 2.04972 2.21931 2.49011 2.77085 2.96773 3.18963 3.26213 3.54573 3.65903 3.79008 3.91074 4.05501 4.14895 4.24540 4.25589 4.30811 4.35589 4.44087 4.55664 4.60128 4.62918 4.64658 4.73234 4.79254 4.81955 4.86123 4.90404 4.93185 4.97760 5.14122 5.18886 5.25664 5.43046 5.49989 5.62834 5.69124 6.21071 6.28675 6.45858 6.67247 6.77178 7.20978 7.55295 8.40062 9.13412 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.004084 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.915038 B = 6854.510816 C = 8095.540441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.307 6.307 3 C 0.134 3.866 4 C -0.176 4.176 5 C -0.058 4.058 6 C -0.111 4.111 7 C 0.041 3.959 8 N -0.428 5.428 9 C -0.006 4.006 10 C 0.560 3.440 11 O -0.558 6.558 12 N -0.589 5.589 13 C 0.115 3.885 14 C 0.124 3.876 15 C 0.132 3.868 16 H 0.039 0.961 17 C -0.121 4.121 18 C 0.086 3.914 19 N -0.640 5.640 20 C -0.210 4.210 21 H 0.073 0.927 22 C -0.034 4.034 23 N -0.963 5.963 24 Si 0.949 3.051 25 H -0.287 1.287 26 H -0.312 1.312 27 H -0.254 1.254 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.181 0.819 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.184 0.816 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 0.672 7.630 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.217 6.217 3 C 0.083 3.917 4 C -0.202 4.202 5 C -0.060 4.060 6 C -0.168 4.168 7 C -0.121 4.121 8 N -0.140 5.140 9 C -0.142 4.142 10 C 0.348 3.652 11 O -0.438 6.438 12 N -0.319 5.319 13 C -0.027 4.027 14 C 0.000 4.000 15 C 0.026 3.974 16 H 0.057 0.943 17 C -0.159 4.159 18 C -0.038 4.038 19 N -0.369 5.369 20 C -0.338 4.338 21 H 0.090 0.910 22 C -0.228 4.228 23 N -0.610 5.610 24 Si 0.780 3.220 25 H -0.215 1.215 26 H -0.241 1.241 27 H -0.179 1.179 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.199 0.801 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.201 0.799 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.545 0.151 7.594 21.904 hybrid contribution 0.224 -0.071 -0.591 0.635 sum -20.322 0.080 7.003 21.495 Atomic orbital electron populations 1.23530 0.76112 1.05934 1.02910 1.86376 1.23625 1.25248 1.86460 1.20140 0.91657 0.86816 0.93091 1.21964 1.02286 0.89969 1.05938 1.21441 0.94579 0.97324 0.92659 1.20935 1.00128 0.91272 1.04487 1.23308 0.92049 0.96622 1.00106 1.68113 1.39611 0.97956 1.08308 1.20499 0.89565 0.92617 1.11545 1.18098 0.82028 0.87983 0.77091 1.90716 1.71959 1.29036 1.52071 1.47688 1.05461 1.10108 1.68613 1.22009 0.96398 0.83253 1.01075 1.21785 0.94652 0.86960 0.96567 1.22727 0.91448 0.89912 0.93339 0.94334 1.23451 0.97719 0.95997 0.98777 1.23032 0.97603 0.87194 0.95934 1.46557 1.32438 1.06580 1.51286 1.18839 0.91958 0.82091 1.40908 0.90989 1.25642 0.98717 0.97337 1.01095 1.69879 1.17155 1.17654 1.56352 0.85805 0.78053 0.80059 0.78095 1.21473 1.24074 1.17911 0.90438 0.90905 0.86766 0.80145 0.88449 0.89514 0.89283 0.79867 0.93784 0.89001 0.93033 0.89953 0.89293 0.88957 0.88561 0.94375 0.93296 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.26 16 2 O -0.31 -8.92 8.58 -68.75 -0.59 -9.51 16 3 C 0.13 3.89 6.71 22.93 0.15 4.05 16 4 C -0.18 -3.39 8.80 22.55 0.20 -3.20 16 5 C -0.06 -1.03 5.90 -19.72 -0.12 -1.15 16 6 C -0.11 -0.95 10.03 71.23 0.71 -0.24 16 7 C 0.04 1.00 10.85 84.89 0.92 1.92 16 8 N -0.43 -14.27 6.15 -184.63 -1.14 -15.41 16 9 C -0.01 -0.22 6.58 41.93 0.28 0.05 16 10 C 0.56 23.20 7.58 86.78 0.66 23.86 16 11 O -0.56 -24.86 14.83 17.01 0.25 -24.61 16 12 N -0.59 -24.27 2.89 -850.19 -2.46 -26.73 16 13 C 0.12 4.71 8.05 127.77 1.03 5.73 16 14 C 0.12 4.87 5.29 86.38 0.46 5.33 16 15 C 0.13 5.57 4.49 45.10 0.20 5.77 16 16 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.12 -4.24 7.86 31.25 0.25 -4.00 16 18 C 0.09 3.70 7.52 86.48 0.65 4.35 16 19 N -0.64 -31.75 3.19 -694.13 -2.22 -33.97 16 20 C -0.21 -12.09 10.17 84.03 0.85 -11.23 16 21 H 0.07 4.48 5.08 -2.91 -0.01 4.47 16 22 C -0.03 -2.03 5.50 84.86 0.47 -1.57 16 23 N -0.96 -61.09 13.97 21.65 0.30 -60.79 16 24 Si 0.95 48.01 24.74 68.60 1.70 49.70 16 25 H -0.29 -14.27 7.03 99.48 0.70 -13.57 16 26 H -0.31 -15.98 7.11 99.48 0.71 -15.28 16 27 H -0.25 -11.97 6.77 99.48 0.67 -11.30 16 28 H 0.08 0.82 7.70 -2.38 -0.02 0.80 16 29 H 0.07 0.85 7.70 -2.38 -0.02 0.83 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.18 1.97 6.46 -2.91 -0.02 1.95 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 34 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 35 H 0.18 3.46 8.06 -2.91 -0.02 3.43 16 36 H 0.04 2.10 5.51 -2.39 -0.01 2.09 16 37 H 0.09 3.38 5.72 -2.39 -0.01 3.37 16 38 H 0.05 2.13 7.78 -2.38 -0.02 2.11 16 39 H 0.08 3.26 7.77 -2.39 -0.02 3.24 16 40 H 0.09 3.22 7.57 -2.38 -0.02 3.20 16 41 H 0.09 3.04 8.10 -2.39 -0.02 3.02 16 42 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.04 1.69 3.69 -2.39 -0.01 1.68 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.44 356.76 4.65 -75.79 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.97 Total: 14.57 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 7.83 Total: 30.94 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -5.51 Total: -136.89 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.34 Total: -34.12 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.70 Total: 49.70 kcal Total: -80.44 4.65 -75.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.548 kcal (2) G-P(sol) polarization free energy of solvation -80.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds