Wall clock time and date at job start Tue Mar 31 2020 12:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31887 * 119.61587 * 2 1 4 4 C 1.31860 * 121.71801 * 180.30928 * 3 2 1 5 5 C 1.38228 * 120.76755 * 359.70935 * 4 3 2 6 6 C 1.38627 * 119.15884 * 359.97438 * 5 4 3 7 7 C 1.38179 * 119.61287 * 179.73204 * 2 1 3 8 8 C 1.50698 * 120.42067 * 359.97438 * 7 2 1 9 9 C 1.50700 * 109.47312 * 84.72399 * 8 7 2 10 10 O 1.21275 * 120.00029 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99902 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99950 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46995 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.50946 * 60.10144 * 13 12 11 15 15 C 1.53715 * 109.44042 * 180.39025 * 13 12 11 16 16 N 1.47150 * 108.15948 * 172.37979 * 15 13 12 17 17 C 1.36938 * 120.98407 * 129.43528 * 16 15 13 18 18 H 1.07995 * 119.99980 * 333.34244 * 17 16 15 19 19 C 1.38813 * 120.00027 * 153.62451 * 17 16 15 20 20 N 1.31617 * 119.99913 * 342.81629 * 19 17 16 21 21 Si 1.86795 * 119.99814 * 162.81694 * 19 17 16 22 22 H 1.48497 * 109.47234 * 59.99903 * 21 19 17 23 23 H 1.48502 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47265 * 299.99866 * 21 19 17 25 25 C 1.47155 * 118.03310 * 309.15056 * 16 15 13 26 26 C 1.53294 * 108.38131 * 50.79152 * 25 16 15 27 27 O 1.42956 * 109.51298 * 299.99848 * 13 12 11 28 28 H 1.08998 * 109.46957 * 270.27320 * 1 2 3 29 29 H 1.09002 * 109.46761 * 30.26970 * 1 2 3 30 30 H 1.08993 * 109.47647 * 150.26516 * 1 2 3 31 31 H 1.08001 * 119.61481 * 179.68212 * 4 3 2 32 32 H 1.07995 * 120.41839 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.78799 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47043 * 324.72339 * 8 7 2 35 35 H 1.09002 * 109.47286 * 204.72848 * 8 7 2 36 36 H 0.97006 * 119.99803 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47104 * 59.99950 * 12 11 9 38 38 H 1.08997 * 109.47014 * 299.99757 * 12 11 9 39 39 H 1.08994 * 109.83705 * 52.69274 * 15 13 12 40 40 H 1.09005 * 109.74252 * 292.00039 * 15 13 12 41 41 H 0.97004 * 120.00264 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.68204 * 170.51704 * 25 16 15 43 43 H 1.08999 * 109.68026 * 291.03439 * 25 16 15 44 44 H 1.08997 * 109.51618 * 67.62232 * 26 25 16 45 45 H 1.09008 * 109.51306 * 187.77569 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4765 1.1949 -0.0061 5 6 4.2267 0.0340 -0.0066 6 6 3.5765 -1.1904 -0.0002 7 6 2.1898 -1.2013 0.0056 8 6 1.4371 -2.5068 0.0123 9 6 1.0724 -2.8837 -1.4005 10 8 1.3927 -2.1634 -2.3221 11 7 0.3904 -4.0212 -1.6398 12 6 0.0364 -4.3879 -3.0133 13 6 -0.7280 -5.7133 -3.0064 14 1 -1.6373 -5.6061 -2.4150 15 6 -1.0905 -6.1023 -4.4486 16 7 -1.6575 -7.4601 -4.4287 17 6 -2.8494 -7.7355 -5.0441 18 1 -3.5849 -6.9549 -5.1704 19 6 -3.1145 -9.0194 -5.5004 20 7 -2.1300 -9.8788 -5.6563 21 14 -4.8687 -9.5272 -5.8931 22 1 -5.4116 -8.6482 -6.9597 23 1 -4.8834 -10.9375 -6.3580 24 1 -5.7058 -9.4000 -4.6731 25 6 -0.9026 -8.5146 -3.7332 26 6 -0.5465 -8.0092 -2.3305 27 8 0.0938 -6.7355 -2.4376 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3634 -0.8923 -0.5097 31 1 3.9754 2.1528 -0.0110 32 1 5.3057 0.0802 -0.0120 33 1 4.1367 -2.1137 -0.0001 34 1 0.5291 -2.3996 0.6056 35 1 2.0644 -3.2857 0.4458 36 1 0.1346 -4.5976 -0.9026 37 1 0.9447 -4.4958 -3.6061 38 1 -0.5904 -3.6089 -3.4472 39 1 -0.1965 -6.0869 -5.0718 40 1 -1.8269 -5.4029 -4.8446 41 1 -2.3153 -10.7761 -5.9748 42 1 -1.5143 -9.4134 -3.6554 43 1 0.0098 -8.7383 -4.2860 44 1 -1.4556 -7.9110 -1.7372 45 1 0.1287 -8.7168 -1.8491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753654168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:02 Heat of formation + Delta-G solvation = -26.862984 kcal Electronic energy + Delta-G solvation = -26349.675638 eV Core-core repulsion = 22560.739230 eV Total energy + Delta-G solvation = -3788.936408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78732 -39.47253 -38.43691 -34.97973 -34.32165 -33.98227 -33.17978 -31.63088 -30.79014 -29.09144 -27.75873 -27.15954 -25.32953 -23.27168 -22.98820 -22.23581 -21.68054 -20.52114 -19.62201 -17.33417 -17.05403 -16.88062 -16.64495 -16.19770 -15.91714 -15.09554 -15.03193 -14.85239 -14.59816 -14.42219 -13.97805 -13.71347 -13.40035 -13.31144 -13.24477 -13.10925 -12.88718 -12.70693 -12.64785 -12.37045 -12.11365 -11.67293 -11.54222 -11.16412 -10.87857 -10.77114 -10.46434 -10.33124 -10.14156 -10.02664 -9.84446 -9.69800 -9.63085 -9.13419 -9.01423 -8.97515 -8.58339 -6.80694 -5.88882 -3.32821 0.88183 1.09553 2.59799 3.14307 3.32128 3.38112 3.38837 3.63584 4.10352 4.18193 4.34210 4.39229 4.54169 4.67076 4.76200 4.84469 5.09215 5.10366 5.15239 5.28434 5.32861 5.36937 5.40423 5.42624 5.46174 5.49958 5.74267 5.81210 5.84592 5.95447 5.98514 6.02689 6.10203 6.23996 6.31511 6.43401 6.47650 6.50982 6.70437 7.04781 7.46098 7.50822 7.66002 7.79213 7.80965 8.20748 8.28675 9.06510 9.69221 10.25975 11.19149 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.002242 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.530119 B =12484.355799 C =12857.796194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.511 3.489 10 O -0.537 6.537 11 N -0.719 5.719 12 C 0.131 3.869 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.404 0.596 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.256 0.744 42 H 0.094 0.906 43 H 0.028 0.972 44 H 0.041 0.959 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.787 14.696 15.458 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 N -0.196 5.196 4 C -0.057 4.057 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.117 4.117 8 C -0.141 4.141 9 C 0.296 3.704 10 O -0.413 6.413 11 N -0.371 5.371 12 C 0.007 3.993 13 C 0.005 3.995 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.318 5.318 17 C -0.386 4.386 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.736 3.264 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.310 6.310 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.693 15.832 14.744 23.316 hybrid contribution -0.590 -1.639 -0.091 1.745 sum 8.103 14.193 14.653 21.950 Atomic orbital electron populations 1.20758 0.89053 1.03872 1.02752 1.21066 0.96865 0.87714 0.93657 1.67523 1.10102 1.29092 1.12856 1.22711 0.89487 0.98432 0.95108 1.22068 1.01397 0.93375 1.03111 1.21455 0.93590 0.98647 0.94971 1.20085 0.94220 0.94894 1.02481 1.20640 1.02166 0.95729 0.95602 1.20402 0.78055 0.81066 0.90831 1.90737 1.53451 1.51282 1.45857 1.45939 1.57422 1.23566 1.10148 1.21434 1.00284 0.94770 0.82843 1.22894 0.92659 0.86408 0.97534 0.92288 1.21529 0.97517 0.89299 0.92231 1.44080 1.22734 1.03342 1.61604 1.19149 0.91310 0.95662 1.32511 0.91365 1.25055 0.97654 0.98106 0.98805 1.70024 1.29702 1.06240 1.48698 0.86313 0.84328 0.77527 0.78275 1.20752 1.21534 1.20960 1.21445 0.96031 0.93174 0.88027 1.23323 0.96343 0.84100 0.99996 1.87769 1.40899 1.19504 1.82800 0.90322 0.90246 0.90799 0.82855 0.84824 0.84898 0.87523 0.87677 0.76156 0.90793 0.90195 0.95223 0.91760 0.93399 0.88769 0.95381 0.94073 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.39 36.01 0.34 -0.67 16 2 C 0.14 1.68 6.78 -82.59 -0.56 1.12 16 3 N -0.49 -5.95 10.27 -9.47 -0.10 -6.05 16 4 C 0.10 0.99 11.18 -17.54 -0.20 0.79 16 5 C -0.18 -1.60 10.11 -39.44 -0.40 -2.00 16 6 C -0.06 -0.59 9.84 -39.28 -0.39 -0.97 16 7 C -0.11 -1.21 4.39 -104.48 -0.46 -1.67 16 8 C -0.10 -0.87 5.16 -29.04 -0.15 -1.02 16 9 C 0.51 6.33 7.03 -10.99 -0.08 6.25 16 10 O -0.54 -8.92 16.03 5.56 0.09 -8.83 16 11 N -0.72 -8.59 5.45 -60.29 -0.33 -8.92 16 12 C 0.13 1.88 5.37 -4.04 -0.02 1.86 16 13 C 0.07 1.08 2.88 -26.36 -0.08 1.00 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.12 2.47 6.05 -3.32 -0.02 2.45 16 16 N -0.59 -14.54 3.04 -171.57 -0.52 -15.06 16 17 C -0.26 -6.87 9.65 -15.06 -0.15 -7.01 16 18 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 19 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 20 N -0.90 -25.61 11.15 55.49 0.62 -25.00 16 21 Si 0.91 21.12 29.59 -169.99 -5.03 16.09 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.14 3.22 5.44 -3.53 -0.02 3.20 16 26 C 0.04 0.74 6.98 37.31 0.26 1.00 16 27 O -0.39 -6.92 10.13 -35.23 -0.36 -7.27 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.70 6.14 -51.93 -0.32 0.38 16 31 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.11 0.68 7.02 -51.93 -0.36 0.31 16 35 H 0.10 0.68 8.06 -51.93 -0.42 0.26 16 36 H 0.40 4.03 8.35 -40.82 -0.34 3.69 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.09 2.40 6.14 -51.93 -0.32 2.08 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -33.54 369.50 -8.85 -42.39 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.80 Total: 2.79 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.00 Total: 4.30 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.33 Total: -55.03 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.27 Total: -16.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.54 -8.85 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753654168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.524 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds