Wall clock time and date at job start Tue Mar 31 2020 12:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31889 * 119.61873 * 2 1 4 4 C 1.31855 * 121.72802 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.75998 * 359.97438 * 4 3 2 6 6 C 1.38625 * 119.16331 * 359.72769 * 5 4 3 7 7 C 1.38185 * 119.61728 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.41782 * 359.97438 * 7 2 1 9 9 C 1.50695 * 109.47018 * 84.99851 * 8 7 2 10 10 O 1.21281 * 120.00078 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00087 * 179.72386 * 9 8 7 12 12 C 1.46493 * 120.00321 * 180.27592 * 11 9 8 13 13 C 1.53002 * 109.47254 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.51050 * 304.90031 * 13 12 11 15 15 C 1.53292 * 109.51252 * 184.74604 * 13 12 11 16 16 N 1.47150 * 108.38698 * 187.77806 * 15 13 12 17 17 C 1.36933 * 120.98214 * 230.55902 * 16 15 13 18 18 H 1.08005 * 120.00299 * 153.72535 * 17 16 15 19 19 C 1.38809 * 120.00389 * 333.72701 * 17 16 15 20 20 N 1.31615 * 120.00569 * 160.00222 * 19 17 16 21 21 Si 1.86806 * 119.99399 * 340.00408 * 19 17 16 22 22 H 1.48501 * 109.47162 * 91.86853 * 21 19 17 23 23 H 1.48503 * 109.47042 * 211.86338 * 21 19 17 24 24 H 1.48496 * 109.47425 * 331.86163 * 21 19 17 25 25 C 1.47155 * 118.03685 * 50.52975 * 16 15 13 26 26 C 1.53292 * 108.38642 * 309.47344 * 25 16 15 27 27 O 1.42963 * 109.22387 * 52.29789 * 26 25 16 28 28 H 1.08998 * 109.47729 * 270.02237 * 1 2 3 29 29 H 1.09006 * 109.47142 * 30.03064 * 1 2 3 30 30 H 1.08997 * 109.47060 * 150.02392 * 1 2 3 31 31 H 1.07992 * 119.61720 * 179.97438 * 4 3 2 32 32 H 1.08005 * 120.41286 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.78766 * 180.27444 * 6 5 4 34 34 H 1.09000 * 109.47065 * 324.99883 * 8 7 2 35 35 H 1.08996 * 109.46912 * 205.00034 * 8 7 2 36 36 H 0.97006 * 119.99550 * 0.27619 * 11 9 8 37 37 H 1.09002 * 109.47245 * 299.99781 * 12 11 9 38 38 H 1.09002 * 109.47439 * 59.99726 * 12 11 9 39 39 H 1.09010 * 109.68569 * 307.49792 * 15 13 12 40 40 H 1.08996 * 109.68181 * 68.04972 * 15 13 12 41 41 H 0.97004 * 120.00109 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.68127 * 189.74465 * 25 16 15 43 43 H 1.09000 * 109.70887 * 69.21075 * 25 16 15 44 44 H 1.09008 * 109.51211 * 292.37574 * 26 25 16 45 45 H 1.09001 * 109.51361 * 172.22096 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 0.0005 5 6 4.2266 0.0341 0.0016 6 6 3.5765 -1.1903 0.0079 7 6 2.1899 -1.2013 0.0005 8 6 1.4372 -2.5068 0.0017 9 6 1.0784 -2.8811 -1.4133 10 8 1.4017 -2.1585 -2.3322 11 7 0.4027 -4.0213 -1.6581 12 6 0.0593 -4.3882 -3.0342 13 6 -0.6995 -5.7168 -3.0335 14 1 -0.1079 -6.4736 -2.5186 15 6 -0.9556 -6.1608 -4.4782 16 7 -1.8433 -7.3341 -4.4527 17 6 -1.5276 -8.4721 -5.1458 18 1 -1.9074 -9.4280 -4.8164 19 6 -0.7192 -8.3973 -6.2717 20 7 -0.0952 -9.4715 -6.7065 21 14 -0.5170 -6.7719 -7.1699 22 1 0.6629 -6.0507 -6.6287 23 1 -0.3184 -7.0285 -8.6190 24 1 -1.7348 -5.9444 -6.9761 25 6 -3.0801 -7.2487 -3.6599 26 6 -2.7205 -6.7515 -2.2551 27 8 -1.9513 -5.5513 -2.3631 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 3.9752 2.1529 0.0001 32 1 5.3057 0.0804 0.0016 33 1 4.1367 -2.1136 0.0133 34 1 0.5266 -2.4008 0.5915 35 1 2.0627 -3.2865 0.4363 36 1 0.1439 -4.5990 -0.9231 37 1 -0.5680 -3.6113 -3.4716 38 1 0.9718 -4.4916 -3.6212 39 1 -1.4323 -5.3519 -5.0320 40 1 -0.0112 -6.4252 -4.9539 41 1 0.4694 -9.4192 -7.4936 42 1 -3.5425 -8.2335 -3.5937 43 1 -3.7711 -6.5496 -4.1309 44 1 -2.1365 -7.5129 -1.7378 45 1 -3.6339 -6.5495 -1.6955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753654169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:05 Heat of formation + Delta-G solvation = -20.552000 kcal Electronic energy + Delta-G solvation = -26673.618921 eV Core-core repulsion = 22884.956178 eV Total energy + Delta-G solvation = -3788.662744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79900 -39.54960 -38.69043 -35.06955 -34.56626 -33.99717 -33.18470 -31.64464 -31.46405 -29.17589 -27.90327 -27.29423 -25.45503 -23.67376 -23.03404 -22.22305 -21.64182 -20.58339 -19.98006 -17.37189 -17.09636 -17.05941 -16.64561 -16.24752 -16.02501 -15.68208 -15.02680 -14.86853 -14.70002 -14.50423 -14.13367 -13.91142 -13.66027 -13.38591 -13.32864 -13.24678 -13.01472 -12.64761 -12.47584 -12.37271 -12.19526 -11.96829 -11.78718 -11.62470 -11.27759 -10.89158 -10.46125 -10.36708 -10.15205 -9.93089 -9.81399 -9.64735 -9.59487 -9.48064 -9.06427 -8.98463 -8.65199 -7.11031 -6.05592 -3.43525 0.87475 1.08781 2.57335 3.10082 3.24422 3.43200 3.44995 3.62373 3.98224 4.09881 4.32885 4.42510 4.52970 4.66271 4.69225 4.75280 4.80412 5.08778 5.12532 5.17845 5.27120 5.33167 5.33471 5.37324 5.40713 5.48149 5.53689 5.70262 5.75690 5.77968 5.85204 5.94735 5.95410 6.01515 6.04438 6.12006 6.36104 6.41093 6.44599 6.50386 6.64351 7.46234 7.51473 7.77519 7.80609 8.17671 8.20039 8.77390 9.58358 9.94013 11.09838 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.002791 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.311551 B =10028.558844 C =10721.351122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.115 4.115 8 C -0.100 4.100 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.720 5.720 12 C 0.128 3.872 13 C 0.066 3.934 14 H 0.067 0.933 15 C 0.101 3.899 16 N -0.607 5.607 17 C -0.264 4.264 18 H 0.089 0.911 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.269 1.269 25 C 0.112 3.888 26 C 0.048 3.952 27 O -0.386 6.386 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.404 0.596 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.083 0.917 41 H 0.264 0.736 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.049 0.951 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 14.979 17.996 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.007 3.993 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.199 4.199 6 C -0.087 4.087 7 C -0.118 4.118 8 C -0.141 4.141 9 C 0.296 3.704 10 O -0.411 6.411 11 N -0.372 5.372 12 C 0.004 3.996 13 C 0.006 3.994 14 H 0.085 0.915 15 C -0.025 4.025 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.106 0.894 19 C -0.174 4.174 20 N -0.548 5.548 21 Si 0.710 3.290 22 H -0.214 1.214 23 H -0.228 1.228 24 H -0.194 1.194 25 C -0.014 4.014 26 C -0.030 4.030 27 O -0.305 6.305 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.238 0.762 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.625 16.334 17.232 24.018 hybrid contribution 0.745 -0.594 -0.502 1.077 sum 4.370 15.740 16.730 23.382 Atomic orbital electron populations 1.20763 0.89014 1.03936 1.02762 1.21074 0.96882 0.87706 0.93596 1.67522 1.10098 1.29088 1.12816 1.22714 0.89491 0.98439 0.95079 1.22071 1.01403 0.93378 1.03098 1.21449 0.93560 0.98645 0.95054 1.20082 0.94219 0.94906 1.02545 1.20634 1.02217 0.95739 0.95471 1.20428 0.78043 0.81004 0.90893 1.90747 1.53274 1.50949 1.46140 1.45943 1.57615 1.23751 1.09869 1.21438 0.99149 0.96153 0.82879 1.22867 0.85248 0.95240 0.96073 0.91509 1.21925 0.96310 0.90710 0.93572 1.44347 1.18747 1.13258 1.56804 1.18905 1.29536 0.85382 1.05397 0.89352 1.25259 0.98446 0.96638 0.97100 1.69815 1.30466 1.28671 1.25812 0.87029 0.78215 0.84732 0.79025 1.21353 1.22802 1.19439 1.21639 0.89057 1.00047 0.90655 1.23058 0.94914 0.86887 0.98125 1.87809 1.31443 1.33324 1.77929 0.90293 0.90252 0.90746 0.82841 0.84815 0.84909 0.87409 0.87707 0.76204 0.90601 0.89984 0.94451 0.89928 0.92563 0.90940 0.95024 0.93284 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.39 36.00 0.34 -0.72 16 2 C 0.15 1.72 6.78 -82.59 -0.56 1.16 16 3 N -0.49 -6.05 10.27 -9.47 -0.10 -6.15 16 4 C 0.10 1.01 11.18 -17.54 -0.20 0.81 16 5 C -0.18 -1.63 10.11 -39.44 -0.40 -2.03 16 6 C -0.06 -0.60 9.84 -39.28 -0.39 -0.98 16 7 C -0.12 -1.24 4.39 -104.48 -0.46 -1.70 16 8 C -0.10 -0.87 5.16 -29.04 -0.15 -1.02 16 9 C 0.51 6.46 7.05 -10.99 -0.08 6.38 16 10 O -0.53 -9.14 16.03 5.56 0.09 -9.05 16 11 N -0.72 -8.74 5.50 -60.30 -0.33 -9.07 16 12 C 0.13 1.94 5.34 -4.04 -0.02 1.92 16 13 C 0.07 1.11 2.81 -26.58 -0.07 1.03 16 14 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 15 C 0.10 2.15 3.67 -3.54 -0.01 2.14 16 16 N -0.61 -14.03 2.83 -171.83 -0.49 -14.52 16 17 C -0.26 -7.19 10.10 -15.06 -0.15 -7.34 16 18 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 19 C 0.03 0.71 5.26 -17.43 -0.09 0.62 16 20 N -0.91 -27.19 13.97 55.49 0.78 -26.42 16 21 Si 0.88 22.08 24.28 -169.99 -4.13 17.95 16 22 H -0.29 -6.87 6.58 56.52 0.37 -6.50 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.27 -6.71 6.55 56.52 0.37 -6.34 16 25 C 0.11 2.10 6.73 -3.53 -0.02 2.08 16 26 C 0.05 0.74 6.98 37.31 0.26 1.00 16 27 O -0.39 -6.28 10.33 -35.23 -0.36 -6.65 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.74 6.15 -51.93 -0.32 0.42 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.11 0.71 7.00 -51.93 -0.36 0.34 16 35 H 0.10 0.65 8.06 -51.93 -0.42 0.23 16 36 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.82 6.87 -51.92 -0.36 0.46 16 40 H 0.08 1.90 4.61 -51.93 -0.24 1.66 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -34.73 363.08 -7.80 -42.53 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.73 Total: 2.54 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.01 Total: 3.35 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.14 Total: -56.15 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.27 Total: -15.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.13 Total: 17.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.73 -7.80 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753654169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.982 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds