Wall clock time and date at job start Tue Mar 31 2020 12:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30015 * 127.33536 * 2 1 4 4 O 1.20650 * 112.30189 * 180.02562 * 3 2 1 5 5 C 1.33501 * 113.15724 * 359.75500 * 4 3 2 6 6 C 1.37358 * 106.33838 * 0.38852 * 5 4 3 7 7 C 1.47401 * 128.56102 * 179.90983 * 6 5 4 8 8 O 1.21608 * 119.99952 * 185.35606 * 7 6 5 9 9 N 1.34778 * 120.00198 * 5.36278 * 7 6 5 10 10 C 1.48652 * 125.78526 * 175.48519 * 9 7 6 11 11 C 1.53061 * 103.44343 * 155.59900 * 10 9 7 12 12 H 1.08999 * 110.56051 * 283.26838 * 11 10 9 13 13 C 1.51629 * 116.67823 * 155.89163 * 11 10 9 14 14 C 1.53813 * 107.09230 * 183.68959 * 13 11 10 15 15 C 1.52711 * 111.60207 * 57.48787 * 14 13 11 16 16 C 1.53842 * 111.71312 * 306.01808 * 15 14 13 17 17 H 1.09002 * 110.01042 * 297.77178 * 16 15 14 18 18 N 1.46502 * 109.93935 * 176.57583 * 16 15 14 19 19 C 1.36940 * 119.99829 * 87.40614 * 18 16 15 20 20 H 1.08002 * 119.99594 * 359.97438 * 19 18 16 21 21 C 1.38807 * 119.99977 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99824 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00073 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47194 * 89.99982 * 23 21 19 25 25 H 1.48503 * 109.47000 * 209.99823 * 23 21 19 26 26 H 1.48498 * 109.46798 * 329.99750 * 23 21 19 27 27 C 1.51449 * 107.04119 * 57.19549 * 16 15 14 28 28 H 1.08995 * 110.22107 * 54.38257 * 27 16 15 29 29 C 1.48244 * 125.78328 * 355.45987 * 9 7 6 30 30 H 1.09000 * 109.46799 * 269.99829 * 1 2 3 31 31 H 1.08991 * 109.47336 * 29.99910 * 1 2 3 32 32 H 1.08997 * 109.47095 * 149.99990 * 1 2 3 33 33 H 1.07997 * 126.82825 * 180.30804 * 5 4 3 34 34 H 1.09007 * 110.62835 * 37.11673 * 10 9 7 35 35 H 1.08994 * 110.76521 * 274.15675 * 10 9 7 36 36 H 1.08996 * 109.94080 * 303.10959 * 13 11 10 37 37 H 1.08997 * 109.94147 * 64.26904 * 13 11 10 38 38 H 1.08991 * 109.03456 * 178.14942 * 14 13 11 39 39 H 1.08998 * 109.03276 * 297.01181 * 14 13 11 40 40 H 1.09001 * 109.02133 * 185.43852 * 15 14 13 41 41 H 1.09000 * 108.95376 * 66.55613 * 15 14 13 42 42 H 0.96990 * 120.00228 * 267.40314 * 18 16 15 43 43 H 0.97002 * 119.99345 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.17307 * 295.94461 * 29 9 7 45 45 H 1.09005 * 110.17114 * 57.66625 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0043 6 6 2.3992 -1.1696 -0.0006 7 6 2.0401 -2.5992 -0.0001 8 8 0.8755 -2.9337 -0.1033 9 7 3.0025 -3.5358 0.1147 10 6 2.7804 -5.0015 0.2246 11 6 4.0914 -5.5997 -0.2914 12 1 4.1343 -5.5469 -1.3792 13 6 4.4369 -6.9966 0.1865 14 6 5.8242 -7.3390 -0.3827 15 6 6.8760 -6.3191 0.0481 16 6 6.4526 -4.8822 -0.3024 17 1 6.3494 -4.7767 -1.3824 18 7 7.4481 -3.9316 0.1992 19 6 8.5317 -3.6044 -0.5716 20 1 8.6525 -4.0475 -1.5491 21 6 9.4747 -2.7034 -0.0966 22 7 10.5159 -2.3885 -0.8377 23 14 9.2659 -1.9375 1.5944 24 1 9.9338 -2.7906 2.6100 25 1 9.8784 -0.5847 1.6042 26 1 7.8197 -1.8285 1.9133 27 6 5.1184 -4.6359 0.3705 28 1 5.1902 -4.8459 1.4376 29 6 4.4620 -3.2787 0.1525 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 4.5967 -1.1195 0.0096 34 1 1.9442 -5.3112 -0.4023 35 1 2.6087 -5.2897 1.2616 36 1 4.4657 -7.0203 1.2758 37 1 3.6981 -7.7086 -0.1812 38 1 6.1190 -8.3273 -0.0304 39 1 5.7682 -7.3530 -1.4712 40 1 7.8167 -6.5451 -0.4539 41 1 7.0213 -6.3941 1.1258 42 1 7.3398 -3.5339 1.0772 43 1 11.1750 -1.7591 -0.5055 44 1 4.7925 -2.8488 -0.7930 45 1 4.7041 -2.6064 0.9756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992793708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:15 Heat of formation + Delta-G solvation = 41.626040 kcal Electronic energy + Delta-G solvation = -27779.722611 eV Core-core repulsion = 23993.756109 eV Total energy + Delta-G solvation = -3785.966501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.98907 -40.61646 -38.71768 -35.77802 -34.57707 -34.31883 -32.46514 -31.71366 -30.54336 -29.50241 -28.81172 -27.15808 -25.71827 -23.86822 -22.86526 -21.73629 -20.87949 -20.42662 -20.09308 -19.92508 -17.80565 -17.76129 -17.49990 -16.70558 -16.16165 -15.63398 -15.05206 -14.68278 -14.57460 -14.29128 -14.03045 -13.78084 -13.46944 -13.35657 -13.11216 -12.93348 -12.77032 -12.65488 -12.60842 -12.26920 -12.18292 -11.58389 -11.45464 -11.36725 -11.11642 -10.97120 -10.77581 -10.45248 -10.38257 -10.19711 -10.10833 -10.04201 -9.86647 -9.84835 -9.64890 -9.02706 -8.80265 -7.40085 -5.86713 -3.23957 0.95971 1.67440 2.54621 3.07319 3.10962 3.25515 3.31093 3.38811 3.88797 4.15438 4.20579 4.48632 4.53792 4.62120 4.70607 4.76491 5.11592 5.13108 5.18197 5.23575 5.33772 5.36808 5.39137 5.41640 5.45811 5.53558 5.57983 5.64720 5.66589 5.68263 5.75666 5.80695 5.81482 5.97617 5.99027 6.07776 6.25953 6.28972 6.33334 6.44166 6.69742 6.86506 7.30180 7.88233 7.96183 8.09946 8.31872 9.09192 9.81296 9.99940 11.31363 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.005128 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.682441 B = 5459.010588 C = 7796.238473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.362 5.362 4 O 0.097 5.903 5 C -0.002 4.002 6 C -0.257 4.257 7 C 0.613 3.387 8 O -0.537 6.537 9 N -0.615 5.615 10 C 0.120 3.880 11 C -0.104 4.104 12 H 0.089 0.911 13 C -0.101 4.101 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.201 3.799 17 H 0.062 0.938 18 N -0.747 5.747 19 C -0.247 4.247 20 H 0.091 0.909 21 C 0.009 3.991 22 N -0.931 5.931 23 Si 0.881 3.119 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.278 1.278 27 C -0.107 4.107 28 H 0.082 0.918 29 C 0.100 3.900 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.083 0.917 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.561 -4.251 2.954 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 N -0.070 5.070 4 O 0.038 5.962 5 C -0.084 4.084 6 C -0.265 4.265 7 C 0.402 3.598 8 O -0.416 6.416 9 N -0.349 5.349 10 C -0.001 4.001 11 C -0.124 4.124 12 H 0.107 0.893 13 C -0.139 4.139 14 C -0.154 4.154 15 C -0.178 4.178 16 C 0.091 3.909 17 H 0.080 0.920 18 N -0.389 5.389 19 C -0.377 4.377 20 H 0.109 0.891 21 C -0.188 4.188 22 N -0.578 5.578 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.127 4.127 28 H 0.100 0.900 29 C -0.022 4.022 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.250 0.750 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.193 0.807 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.214 -2.991 2.696 17.678 hybrid contribution 0.302 -0.236 1.312 1.367 sum -16.911 -3.228 4.008 17.677 Atomic orbital electron populations 1.20254 0.84941 1.04377 1.03741 1.24834 0.98854 0.86325 0.99524 1.73675 0.89380 1.23723 1.20220 1.84604 1.21372 1.23296 1.66879 1.27285 1.01092 0.83765 0.96266 1.22233 0.92808 0.95374 1.16054 1.16382 0.84279 0.82639 0.76460 1.90763 1.18052 1.81756 1.51026 1.48960 1.06665 1.07076 1.72183 1.22014 0.98321 0.78413 1.01385 1.22115 0.93397 0.95719 1.01157 0.89296 1.21326 0.97276 0.94603 1.00739 1.21574 0.94234 0.98916 1.00649 1.22305 0.98442 0.95881 1.01192 1.19932 0.85314 0.88749 0.96934 0.91961 1.42784 1.26075 1.51058 1.19004 1.19043 0.97868 1.21029 0.99766 0.89140 1.24666 0.96852 0.99598 0.97648 1.69695 1.13019 1.37899 1.37171 0.86623 0.77326 0.79194 0.85684 1.21132 1.21675 1.20396 1.22204 0.96546 0.92654 1.01287 0.90013 1.22091 0.78586 0.99157 1.02391 0.89953 0.90461 0.88595 0.74972 0.90075 0.91061 0.91622 0.91833 0.92442 0.92298 0.91407 0.92789 0.80680 0.92949 0.89844 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.19 36.01 0.37 -0.45 16 2 C 0.07 0.91 7.58 -79.77 -0.60 0.31 16 3 N -0.36 -5.18 12.01 34.78 0.42 -4.77 16 4 O 0.10 1.33 11.06 18.63 0.21 1.53 16 5 C 0.00 -0.03 10.87 30.41 0.33 0.30 16 6 C -0.26 -3.50 6.41 -102.89 -0.66 -4.16 16 7 C 0.61 8.78 7.85 -12.53 -0.10 8.69 16 8 O -0.54 -8.80 15.94 5.27 0.08 -8.72 16 9 N -0.62 -7.74 3.38 -172.15 -0.58 -8.32 16 10 C 0.12 1.31 6.58 -2.82 -0.02 1.29 16 11 C -0.10 -1.10 2.47 -89.89 -0.22 -1.32 16 12 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 13 C -0.10 -0.96 5.70 -27.00 -0.15 -1.11 16 14 C -0.12 -1.27 5.86 -26.46 -0.15 -1.43 16 15 C -0.14 -1.99 5.47 -26.44 -0.14 -2.13 16 16 C 0.20 3.15 2.52 -68.27 -0.17 2.97 16 17 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 18 N -0.75 -15.03 4.86 -53.76 -0.26 -15.29 16 19 C -0.25 -6.25 10.44 -15.06 -0.16 -6.41 16 20 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 21 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -27.62 13.97 55.49 0.78 -26.85 16 23 Si 0.88 20.40 27.74 -169.99 -4.71 15.68 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -5.79 6.52 56.52 0.37 -5.42 16 27 C -0.11 -1.33 1.82 -90.36 -0.16 -1.50 16 28 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 29 C 0.10 1.22 4.65 -3.43 -0.02 1.21 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.08 7.03 -51.93 -0.37 0.72 16 33 H 0.23 2.51 4.87 -52.49 -0.26 2.25 16 34 H 0.08 0.89 8.03 -51.92 -0.42 0.48 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.61 7.98 -51.93 -0.41 0.19 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.36 7.15 5.67 -40.82 -0.23 6.92 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.08 1.06 7.34 -51.93 -0.38 0.68 16 45 H 0.07 0.88 6.72 -51.93 -0.35 0.53 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -30.70 356.76 -7.30 -38.00 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.63 Total: 6.94 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.97 Total: -3.60 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.35 Total: -55.22 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.29 Total: -7.18 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.71 Total: 15.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.70 -7.30 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992793708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.626 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds