Wall clock time and date at job start Tue Mar 31 2020 12:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30015 * 127.33536 * 2 1 4 4 O 1.20650 * 112.30189 * 180.02562 * 3 2 1 5 5 C 1.33501 * 113.15724 * 359.75500 * 4 3 2 6 6 C 1.37358 * 106.33838 * 0.38852 * 5 4 3 7 7 C 1.47401 * 128.56102 * 179.90983 * 6 5 4 8 8 O 1.21608 * 119.99952 * 185.35606 * 7 6 5 9 9 N 1.34778 * 120.00198 * 5.36278 * 7 6 5 10 10 C 1.48652 * 125.78526 * 175.48519 * 9 7 6 11 11 C 1.53061 * 103.44343 * 155.59900 * 10 9 7 12 12 H 1.08999 * 110.56051 * 283.26838 * 11 10 9 13 13 C 1.51629 * 116.67823 * 155.89163 * 11 10 9 14 14 C 1.53813 * 107.09230 * 183.68959 * 13 11 10 15 15 C 1.52711 * 111.60207 * 57.48787 * 14 13 11 16 16 C 1.53842 * 111.71312 * 306.01808 * 15 14 13 17 17 H 1.09002 * 110.01042 * 297.77178 * 16 15 14 18 18 N 1.46502 * 109.93935 * 176.57583 * 16 15 14 19 19 C 1.36940 * 119.99829 * 87.40614 * 18 16 15 20 20 H 1.08002 * 119.99594 * 359.97438 * 19 18 16 21 21 C 1.38807 * 119.99977 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99824 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00073 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47194 * 89.99982 * 23 21 19 25 25 H 1.48503 * 109.47000 * 209.99823 * 23 21 19 26 26 H 1.48498 * 109.46798 * 329.99750 * 23 21 19 27 27 C 1.51449 * 107.04119 * 57.19549 * 16 15 14 28 28 H 1.08995 * 110.22107 * 54.38257 * 27 16 15 29 29 C 1.48244 * 125.78328 * 355.45987 * 9 7 6 30 30 H 1.09000 * 109.46799 * 269.99829 * 1 2 3 31 31 H 1.08991 * 109.47336 * 29.99910 * 1 2 3 32 32 H 1.08997 * 109.47095 * 149.99990 * 1 2 3 33 33 H 1.07997 * 126.82825 * 180.30804 * 5 4 3 34 34 H 1.09007 * 110.62835 * 37.11673 * 10 9 7 35 35 H 1.08994 * 110.76521 * 274.15675 * 10 9 7 36 36 H 1.08996 * 109.94080 * 303.10959 * 13 11 10 37 37 H 1.08997 * 109.94147 * 64.26904 * 13 11 10 38 38 H 1.08991 * 109.03456 * 178.14942 * 14 13 11 39 39 H 1.08998 * 109.03276 * 297.01181 * 14 13 11 40 40 H 1.09001 * 109.02133 * 185.43852 * 15 14 13 41 41 H 1.09000 * 108.95376 * 66.55613 * 15 14 13 42 42 H 0.96990 * 120.00228 * 267.40314 * 18 16 15 43 43 H 0.97002 * 119.99345 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.17307 * 295.94461 * 29 9 7 45 45 H 1.09005 * 110.17114 * 57.66625 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0043 6 6 2.3992 -1.1696 -0.0006 7 6 2.0401 -2.5992 -0.0001 8 8 0.8755 -2.9337 -0.1033 9 7 3.0025 -3.5358 0.1147 10 6 2.7804 -5.0015 0.2246 11 6 4.0914 -5.5997 -0.2914 12 1 4.1343 -5.5469 -1.3792 13 6 4.4369 -6.9966 0.1865 14 6 5.8242 -7.3390 -0.3827 15 6 6.8760 -6.3191 0.0481 16 6 6.4526 -4.8822 -0.3024 17 1 6.3494 -4.7767 -1.3824 18 7 7.4481 -3.9316 0.1992 19 6 8.5317 -3.6044 -0.5716 20 1 8.6525 -4.0475 -1.5491 21 6 9.4747 -2.7034 -0.0966 22 7 10.5159 -2.3885 -0.8377 23 14 9.2659 -1.9375 1.5944 24 1 9.9338 -2.7906 2.6100 25 1 9.8784 -0.5847 1.6042 26 1 7.8197 -1.8285 1.9133 27 6 5.1184 -4.6359 0.3705 28 1 5.1902 -4.8459 1.4376 29 6 4.4620 -3.2787 0.1525 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 4.5967 -1.1195 0.0096 34 1 1.9442 -5.3112 -0.4023 35 1 2.6087 -5.2897 1.2616 36 1 4.4657 -7.0203 1.2758 37 1 3.6981 -7.7086 -0.1812 38 1 6.1190 -8.3273 -0.0304 39 1 5.7682 -7.3530 -1.4712 40 1 7.8167 -6.5451 -0.4539 41 1 7.0213 -6.3941 1.1258 42 1 7.3398 -3.5339 1.0772 43 1 11.1750 -1.7591 -0.5055 44 1 4.7925 -2.8488 -0.7930 45 1 4.7041 -2.6064 0.9756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992793708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:14 Heat of formation + Delta-G solvation = 22.578271 kcal Electronic energy + Delta-G solvation = -27780.548584 eV Core-core repulsion = 23993.756109 eV Total energy + Delta-G solvation = -3786.792475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.02238 -41.64228 -39.82686 -37.02087 -35.75039 -35.55296 -33.66640 -33.29172 -31.57486 -30.88316 -29.73019 -28.24021 -26.81788 -25.28423 -24.22370 -22.74977 -21.90694 -21.56020 -21.15353 -21.00318 -19.56034 -18.83967 -18.54921 -17.77586 -17.18156 -16.71137 -16.58847 -16.06165 -15.66327 -15.37914 -15.20323 -14.92947 -14.59089 -14.44444 -14.28003 -14.17874 -13.95022 -13.69141 -13.55332 -13.43156 -13.39484 -12.85765 -12.83529 -12.55000 -12.41876 -12.28761 -11.85727 -11.79679 -11.70763 -11.50488 -11.30339 -11.25436 -11.04898 -10.92045 -10.89154 -10.82873 -9.80551 -9.24216 -7.94965 -5.28147 -0.05825 0.64893 1.41885 1.46703 1.54555 1.55013 2.00719 2.12281 2.54792 2.90178 3.16577 3.23418 3.37127 3.49143 3.62235 3.74857 3.76596 3.94624 4.19010 4.23917 4.29956 4.37645 4.42372 4.50777 4.54742 4.59011 4.60481 4.63764 4.68270 4.71995 4.74110 4.80252 4.88266 5.06067 5.10108 5.12845 5.28784 5.31374 5.38168 5.43582 5.53009 5.67885 5.86732 6.26245 6.28664 6.90280 7.07937 7.16276 7.91332 8.10801 9.26737 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.005128 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.682441 B = 5459.010588 C = 7796.238473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.063 3.937 3 N -0.379 5.379 4 O 0.088 5.912 5 C 0.012 3.988 6 C -0.273 4.273 7 C 0.612 3.388 8 O -0.562 6.562 9 N -0.611 5.611 10 C 0.120 3.880 11 C -0.092 4.092 12 H 0.083 0.917 13 C -0.094 4.094 14 C -0.110 4.110 15 C -0.132 4.132 16 C 0.197 3.803 17 H 0.047 0.953 18 N -0.747 5.747 19 C -0.220 4.220 20 H 0.055 0.945 21 C -0.062 4.062 22 N -0.987 5.987 23 Si 0.945 3.055 24 H -0.287 1.287 25 H -0.304 1.304 26 H -0.236 1.236 27 C -0.102 4.102 28 H 0.094 0.906 29 C 0.098 3.902 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.367 0.633 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.811 -5.290 4.774 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 N -0.089 5.089 4 O 0.032 5.968 5 C -0.070 4.070 6 C -0.281 4.281 7 C 0.401 3.599 8 O -0.443 6.443 9 N -0.344 5.344 10 C 0.000 4.000 11 C -0.111 4.111 12 H 0.102 0.898 13 C -0.132 4.132 14 C -0.148 4.148 15 C -0.172 4.172 16 C 0.089 3.911 17 H 0.065 0.935 18 N -0.390 5.390 19 C -0.351 4.351 20 H 0.073 0.927 21 C -0.253 4.253 22 N -0.638 5.638 23 Si 0.773 3.227 24 H -0.213 1.213 25 H -0.232 1.232 26 H -0.160 1.160 27 C -0.122 4.122 28 H 0.113 0.887 29 C -0.024 4.024 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.265 0.735 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.200 0.800 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.512 -4.084 4.529 20.443 hybrid contribution 1.003 -0.015 0.632 1.186 sum -18.509 -4.098 5.161 19.647 Atomic orbital electron populations 1.20336 0.83354 1.04751 1.04678 1.25301 1.00011 0.86122 0.98586 1.73677 0.89633 1.24270 1.21343 1.84583 1.21336 1.23824 1.67105 1.27525 1.01317 0.83306 0.94881 1.22304 0.93329 0.95335 1.17102 1.16451 0.84159 0.82989 0.76267 1.90748 1.18976 1.82135 1.52448 1.48964 1.06403 1.07682 1.71303 1.22138 0.98273 0.77238 1.02395 1.22056 0.92367 0.95982 1.00744 0.89832 1.21306 0.96382 0.94080 1.01394 1.21511 0.94189 0.98330 1.00746 1.22169 0.98301 0.95783 1.00945 1.20085 0.86009 0.88624 0.96392 0.93489 1.42744 1.25466 1.52022 1.18722 1.18960 0.98640 1.18949 0.98560 0.92712 1.25427 0.96865 1.01149 1.01883 1.69889 1.14652 1.39613 1.39666 0.85559 0.79486 0.77109 0.80536 1.21338 1.23181 1.16003 1.22054 0.94802 0.93602 1.01735 0.88733 1.22110 0.78466 0.99284 1.02545 0.88656 0.89008 0.89211 0.73511 0.89961 0.89493 0.90472 0.89536 0.90984 0.92406 0.94597 0.92540 0.79996 0.93654 0.90467 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.19 71.24 0.73 -0.76 16 2 C 0.06 1.62 7.58 45.16 0.34 1.96 16 3 N -0.38 -10.47 12.01 -44.79 -0.54 -11.01 16 4 O 0.09 2.30 11.06 76.93 0.85 3.16 16 5 C 0.01 0.27 10.87 67.61 0.73 1.01 16 6 C -0.27 -7.03 6.41 -18.75 -0.12 -7.15 16 7 C 0.61 16.43 7.85 86.66 0.68 17.11 16 8 O -0.56 -17.58 15.94 -4.06 -0.06 -17.64 16 9 N -0.61 -13.82 3.38 -816.80 -2.76 -16.58 16 10 C 0.12 2.22 6.58 85.98 0.57 2.79 16 11 C -0.09 -1.64 2.47 -10.32 -0.03 -1.66 16 12 H 0.08 1.63 8.07 -2.39 -0.02 1.61 16 13 C -0.09 -1.39 5.70 30.42 0.17 -1.21 16 14 C -0.11 -2.11 5.86 30.77 0.18 -1.93 16 15 C -0.13 -3.61 5.47 30.78 0.17 -3.45 16 16 C 0.20 5.92 2.52 44.77 0.11 6.03 16 17 H 0.05 1.56 8.01 -2.39 -0.02 1.54 16 18 N -0.75 -29.14 4.86 -324.00 -1.57 -30.72 16 19 C -0.22 -11.27 10.44 84.03 0.88 -10.40 16 20 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 21 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 22 N -0.99 -60.66 13.97 21.65 0.30 -60.36 16 23 Si 0.95 41.70 27.74 68.60 1.90 43.60 16 24 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.24 -8.68 6.52 99.48 0.65 -8.03 16 27 C -0.10 -2.25 1.82 -10.62 -0.02 -2.27 16 28 H 0.09 1.93 7.93 -2.39 -0.02 1.91 16 29 C 0.10 2.15 4.65 85.82 0.40 2.55 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.93 7.03 -2.39 -0.02 1.91 16 33 H 0.25 4.80 4.87 -2.91 -0.01 4.78 16 34 H 0.08 1.56 8.03 -2.38 -0.02 1.54 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.04 7.98 -2.39 -0.02 1.02 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.37 13.52 5.67 -92.72 -0.53 13.00 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.08 1.82 7.34 -2.39 -0.02 1.80 16 45 H 0.08 1.71 6.72 -2.38 -0.02 1.70 16 Total: -1.00 -68.29 356.76 3.81 -64.49 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.43 Total: 25.38 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.26 Total: -0.32 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -4.57 Total: -118.66 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.79 Total: -14.49 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.90 Total: 43.60 kcal Total: -68.29 3.81 -64.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992793708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.065 kcal (2) G-P(sol) polarization free energy of solvation -68.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds