Wall clock time and date at job start Tue Mar 31 2020 12:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.28635 * 2 1 4 4 C 1.54004 * 110.32733 * 122.13834 * 2 1 3 5 5 N 1.47483 * 107.08427 * 117.59033 * 4 2 1 6 6 C 1.34770 * 127.03369 * 205.41141 * 5 4 2 7 7 O 1.21497 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.48332 * 120.00122 * 179.97438 * 6 5 4 9 9 C 1.42274 * 126.93851 * 179.71341 * 8 6 5 10 10 C 1.35312 * 103.92069 * 179.91474 * 9 8 6 11 11 C 1.50703 * 126.66405 * 180.09196 * 10 9 8 12 12 C 1.52998 * 117.49561 * 189.02662 * 11 10 9 13 13 C 1.53002 * 117.49873 * 120.36766 * 11 10 9 14 14 O 1.34018 * 106.67023 * 0.33961 * 10 9 8 15 15 N 1.20901 * 111.84094 * 359.76929 * 14 10 9 16 16 C 1.48117 * 105.93483 * 25.44320 * 5 4 2 17 17 C 1.54616 * 110.32542 * 237.87259 * 2 1 3 18 18 H 1.08995 * 110.74199 * 337.58957 * 17 2 1 19 19 N 1.46498 * 110.74261 * 100.92062 * 17 2 1 20 20 C 1.36937 * 119.99957 * 204.99721 * 19 17 2 21 21 H 1.08004 * 120.00136 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99909 * 179.97438 * 20 19 17 23 23 N 1.31615 * 119.99901 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47199 * 89.99856 * 24 22 20 26 26 H 1.48491 * 109.47162 * 210.00104 * 24 22 20 27 27 H 1.48502 * 109.47123 * 330.00238 * 24 22 20 28 28 H 1.08998 * 109.46951 * 60.69943 * 1 2 3 29 29 H 1.09005 * 109.46741 * 180.69590 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.69826 * 1 2 3 31 31 H 1.09004 * 109.46996 * 59.30456 * 3 2 1 32 32 H 1.09005 * 109.46669 * 179.29583 * 3 2 1 33 33 H 1.08995 * 109.47932 * 299.30018 * 3 2 1 34 34 H 1.09001 * 109.90740 * 236.94638 * 4 2 1 35 35 H 1.08995 * 109.90957 * 358.03176 * 4 2 1 36 36 H 1.08003 * 128.03730 * 0.02562 * 9 8 6 37 37 H 1.08999 * 115.54877 * 334.69173 * 11 10 9 38 38 H 1.08997 * 117.50109 * 359.97438 * 12 11 10 39 39 H 1.09004 * 117.50317 * 145.01575 * 12 11 10 40 40 H 1.09005 * 117.49603 * 214.97447 * 13 11 10 41 41 H 1.08997 * 117.50135 * 359.97140 * 13 11 10 42 42 H 1.09001 * 110.66111 * 79.14837 * 16 5 4 43 43 H 1.08997 * 110.66576 * 202.10805 * 16 5 4 44 44 H 0.97001 * 120.00006 * 24.99595 * 19 17 2 45 45 H 0.97001 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8278 -1.9217 0.7102 6 6 3.0626 -3.0867 1.3457 7 8 2.6247 -3.2674 2.4645 8 6 3.8548 -4.1488 0.6788 9 6 4.1943 -5.4238 1.2109 10 6 4.9122 -6.0079 0.2238 11 6 5.5263 -7.3839 0.2510 12 6 6.4729 -7.7577 -0.8913 13 6 5.0761 -8.3797 -0.8198 14 8 4.9757 -5.1229 -0.7806 15 7 4.3877 -4.1001 -0.5167 16 6 3.2837 -1.5375 -0.6457 17 6 2.0671 -0.7711 -1.2279 18 1 1.3176 -1.4667 -1.6050 19 7 2.4907 0.1574 -2.2789 20 6 2.5088 -0.2504 -3.5861 21 1 2.2112 -1.2565 -3.8421 22 6 2.9097 0.6295 -4.5821 23 7 3.2719 1.8558 -4.2701 24 14 2.9337 0.0736 -6.3653 25 1 1.6165 0.3570 -6.9900 26 1 3.9970 0.8066 -7.0980 27 1 3.2063 -1.3849 -6.4255 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0125 30 1 -0.3633 0.5246 0.8836 31 1 1.6944 1.9578 0.8837 32 1 3.1504 1.4195 0.0126 33 1 1.7149 1.9504 -0.8961 34 1 2.7182 -0.1227 1.8101 35 1 1.2336 -1.1128 1.8376 36 1 3.9371 -5.8315 2.1774 37 1 5.7526 -7.7782 1.2417 38 1 6.6513 -7.0086 -1.6627 39 1 7.3219 -8.3982 -0.6523 40 1 5.0067 -9.4292 -0.5337 41 1 4.3355 -8.0398 -1.5437 42 1 4.1554 -0.8856 -0.5881 43 1 3.5055 -2.4225 -1.2421 44 1 2.7584 1.0609 -2.0490 45 1 3.5524 2.4705 -4.9661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996106295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:36 Heat of formation + Delta-G solvation = 79.538170 kcal Electronic energy + Delta-G solvation = -27239.124097 eV Core-core repulsion = 23454.801589 eV Total energy + Delta-G solvation = -3784.322508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.12445 -39.97305 -38.01866 -37.70349 -34.28002 -34.00061 -33.13403 -31.53518 -30.80316 -27.60529 -27.02994 -26.81130 -24.60947 -23.86532 -23.58438 -22.73846 -22.30802 -21.32435 -18.94637 -18.47072 -17.82850 -17.45003 -17.32179 -16.79453 -15.87816 -15.59422 -15.52553 -14.58984 -14.51049 -13.98269 -13.88579 -13.75928 -13.64669 -13.21037 -12.80379 -12.72135 -12.66243 -12.18341 -11.94718 -11.86818 -11.63186 -11.55123 -11.28279 -11.20798 -10.98185 -10.92029 -10.83390 -10.58892 -10.48574 -10.44989 -10.18199 -10.11268 -9.86396 -9.65891 -9.34659 -9.02567 -8.47159 -7.04845 -5.83734 -3.13316 1.10226 1.55371 2.72531 2.95965 3.24688 3.40777 3.46015 3.46734 3.47993 3.95605 4.07156 4.38677 4.53040 4.53860 4.69366 4.90995 5.00151 5.09471 5.11869 5.16478 5.25385 5.27744 5.45732 5.49732 5.63701 5.64683 5.73390 5.74536 5.75356 5.79271 5.84295 5.99632 6.06891 6.16473 6.25704 6.30069 6.33116 6.48865 6.58988 6.62967 6.76567 6.92233 7.63620 7.67002 7.94300 8.20912 8.34913 9.47040 10.00573 10.36296 11.38556 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.004166 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.218591 B = 6719.035283 C = 8977.037437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.136 4.136 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.610 3.390 7 O -0.540 6.540 8 C -0.019 4.019 9 C -0.177 4.177 10 C -0.008 4.008 11 C -0.086 4.086 12 C -0.166 4.166 13 C -0.162 4.162 14 O 0.122 5.878 15 N -0.314 5.314 16 C 0.065 3.935 17 C 0.180 3.820 18 H 0.065 0.935 19 N -0.711 5.711 20 C -0.246 4.246 21 H 0.071 0.929 22 C -0.008 4.008 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.179 0.821 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.391 0.609 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -15.695 10.968 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.397 3.603 7 O -0.417 6.417 8 C -0.178 4.178 9 C -0.199 4.199 10 C -0.071 4.071 11 C -0.105 4.105 12 C -0.203 4.203 13 C -0.199 4.199 14 O 0.046 5.954 15 N -0.015 5.015 16 C -0.060 4.060 17 C 0.068 3.932 18 H 0.083 0.917 19 N -0.353 5.353 20 C -0.377 4.377 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.197 0.803 37 H 0.157 0.843 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.229 0.771 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.497 -14.912 10.480 18.397 hybrid contribution 0.133 -0.336 -0.223 0.424 sum 2.629 -15.248 10.257 18.564 Atomic orbital electron populations 1.21796 0.93719 1.01388 1.01913 1.21757 0.96113 0.96277 0.94952 1.21762 1.01031 0.94422 1.02103 1.22236 0.95480 0.86160 0.96438 1.48633 1.51696 1.13704 1.19111 1.16444 0.79595 0.79897 0.84400 1.90759 1.52656 1.79895 1.18376 1.23421 1.04129 0.97533 0.92668 1.22262 1.02321 0.93130 1.02231 1.23416 1.01362 0.94026 0.88309 1.20424 1.05036 0.87467 0.97576 1.23114 0.93831 1.03672 0.99690 1.23143 0.98478 0.98034 1.00293 1.84822 1.54129 1.18194 1.38223 1.74396 1.08090 1.03089 1.15899 1.24093 1.00398 1.01269 0.80257 1.21278 0.92783 0.91431 0.87742 0.91736 1.42575 1.78551 1.12290 1.01888 1.19273 1.37906 0.97155 0.83342 0.91112 1.24725 1.01723 0.95904 0.98047 1.69651 1.50814 1.05113 1.32291 0.86200 0.77253 0.77766 0.85040 1.21657 1.21718 1.20659 0.91592 0.93038 0.93040 0.93270 0.92434 0.90429 0.91458 0.90618 0.80319 0.84297 0.87553 0.87548 0.87480 0.87997 0.90909 0.88749 0.77130 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.22 37.16 0.31 -1.64 16 2 C -0.09 -1.47 0.95 -153.13 -0.15 -1.62 16 3 C -0.14 -2.21 7.04 37.16 0.26 -1.95 16 4 C 0.12 1.90 6.28 -2.98 -0.02 1.88 16 5 N -0.60 -10.55 3.29 -170.58 -0.56 -11.11 16 6 C 0.61 10.93 7.92 -12.11 -0.10 10.84 16 7 O -0.54 -10.45 17.29 5.37 0.09 -10.36 16 8 C -0.02 -0.30 7.05 -82.53 -0.58 -0.88 16 9 C -0.18 -2.24 10.92 -39.07 -0.43 -2.67 16 10 C -0.01 -0.09 6.93 -35.35 -0.24 -0.34 16 11 C -0.09 -0.63 6.26 -91.77 -0.57 -1.20 16 12 C -0.17 -1.07 10.18 -26.69 -0.27 -1.34 16 13 C -0.16 -1.02 10.24 -26.69 -0.27 -1.30 16 14 O 0.12 1.70 10.96 17.24 0.19 1.89 16 15 N -0.31 -5.18 9.18 33.29 0.31 -4.87 16 16 C 0.07 1.24 6.42 -2.03 -0.01 1.23 16 17 C 0.18 3.58 3.16 -65.96 -0.21 3.37 16 18 H 0.06 1.34 7.82 -51.93 -0.41 0.93 16 19 N -0.71 -17.03 4.97 -51.52 -0.26 -17.28 16 20 C -0.25 -6.62 9.96 -15.06 -0.15 -6.77 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 33 H 0.08 1.44 6.90 -51.93 -0.36 1.08 16 34 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 35 H 0.08 1.16 7.60 -51.93 -0.39 0.77 16 36 H 0.18 1.88 8.06 -52.48 -0.42 1.45 16 37 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.79 8.01 -51.93 -0.42 0.38 16 39 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.09 1.88 5.51 -51.93 -0.29 1.60 16 44 H 0.39 9.73 5.13 -40.82 -0.21 9.52 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -31.30 370.78 -8.13 -39.43 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.66 Total: 8.89 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.53 Total: -2.69 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.21 Total: -59.74 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.28 Total: -8.47 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.30 -8.13 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996106295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.972 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds