Wall clock time and date at job start Tue Mar 31 2020 12:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.28635 * 2 1 4 4 C 1.54004 * 110.32733 * 122.13834 * 2 1 3 5 5 N 1.47483 * 107.08427 * 117.59033 * 4 2 1 6 6 C 1.34770 * 127.03369 * 205.41141 * 5 4 2 7 7 O 1.21497 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.48332 * 120.00122 * 179.97438 * 6 5 4 9 9 C 1.42274 * 126.93851 * 179.71341 * 8 6 5 10 10 C 1.35312 * 103.92069 * 179.91474 * 9 8 6 11 11 C 1.50703 * 126.66405 * 180.09196 * 10 9 8 12 12 C 1.52998 * 117.49561 * 189.02662 * 11 10 9 13 13 C 1.53002 * 117.49873 * 120.36766 * 11 10 9 14 14 O 1.34018 * 106.67023 * 0.33961 * 10 9 8 15 15 N 1.20901 * 111.84094 * 359.76929 * 14 10 9 16 16 C 1.48117 * 105.93483 * 25.44320 * 5 4 2 17 17 C 1.54616 * 110.32542 * 237.87259 * 2 1 3 18 18 H 1.08995 * 110.74199 * 337.58957 * 17 2 1 19 19 N 1.46498 * 110.74261 * 100.92062 * 17 2 1 20 20 C 1.36937 * 119.99957 * 204.99721 * 19 17 2 21 21 H 1.08004 * 120.00136 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99909 * 179.97438 * 20 19 17 23 23 N 1.31615 * 119.99901 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99965 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47199 * 89.99856 * 24 22 20 26 26 H 1.48491 * 109.47162 * 210.00104 * 24 22 20 27 27 H 1.48502 * 109.47123 * 330.00238 * 24 22 20 28 28 H 1.08998 * 109.46951 * 60.69943 * 1 2 3 29 29 H 1.09005 * 109.46741 * 180.69590 * 1 2 3 30 30 H 1.08996 * 109.47202 * 300.69826 * 1 2 3 31 31 H 1.09004 * 109.46996 * 59.30456 * 3 2 1 32 32 H 1.09005 * 109.46669 * 179.29583 * 3 2 1 33 33 H 1.08995 * 109.47932 * 299.30018 * 3 2 1 34 34 H 1.09001 * 109.90740 * 236.94638 * 4 2 1 35 35 H 1.08995 * 109.90957 * 358.03176 * 4 2 1 36 36 H 1.08003 * 128.03730 * 0.02562 * 9 8 6 37 37 H 1.08999 * 115.54877 * 334.69173 * 11 10 9 38 38 H 1.08997 * 117.50109 * 359.97438 * 12 11 10 39 39 H 1.09004 * 117.50317 * 145.01575 * 12 11 10 40 40 H 1.09005 * 117.49603 * 214.97447 * 13 11 10 41 41 H 1.08997 * 117.50135 * 359.97140 * 13 11 10 42 42 H 1.09001 * 110.66111 * 79.14837 * 16 5 4 43 43 H 1.08997 * 110.66576 * 202.10805 * 16 5 4 44 44 H 0.97001 * 120.00006 * 24.99595 * 19 17 2 45 45 H 0.97001 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8278 -1.9217 0.7102 6 6 3.0626 -3.0867 1.3457 7 8 2.6247 -3.2674 2.4645 8 6 3.8548 -4.1488 0.6788 9 6 4.1943 -5.4238 1.2109 10 6 4.9122 -6.0079 0.2238 11 6 5.5263 -7.3839 0.2510 12 6 6.4729 -7.7577 -0.8913 13 6 5.0761 -8.3797 -0.8198 14 8 4.9757 -5.1229 -0.7806 15 7 4.3877 -4.1001 -0.5167 16 6 3.2837 -1.5375 -0.6457 17 6 2.0671 -0.7711 -1.2279 18 1 1.3176 -1.4667 -1.6050 19 7 2.4907 0.1574 -2.2789 20 6 2.5088 -0.2504 -3.5861 21 1 2.2112 -1.2565 -3.8421 22 6 2.9097 0.6295 -4.5821 23 7 3.2719 1.8558 -4.2701 24 14 2.9337 0.0736 -6.3653 25 1 1.6165 0.3570 -6.9900 26 1 3.9970 0.8066 -7.0980 27 1 3.2063 -1.3849 -6.4255 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0125 30 1 -0.3633 0.5246 0.8836 31 1 1.6944 1.9578 0.8837 32 1 3.1504 1.4195 0.0126 33 1 1.7149 1.9504 -0.8961 34 1 2.7182 -0.1227 1.8101 35 1 1.2336 -1.1128 1.8376 36 1 3.9371 -5.8315 2.1774 37 1 5.7526 -7.7782 1.2417 38 1 6.6513 -7.0086 -1.6627 39 1 7.3219 -8.3982 -0.6523 40 1 5.0067 -9.4292 -0.5337 41 1 4.3355 -8.0398 -1.5437 42 1 4.1554 -0.8856 -0.5881 43 1 3.5055 -2.4225 -1.2421 44 1 2.7584 1.0609 -2.0490 45 1 3.5524 2.4705 -4.9661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996106295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:34 Heat of formation + Delta-G solvation = 61.491252 kcal Electronic energy + Delta-G solvation = -27239.906670 eV Core-core repulsion = 23454.801589 eV Total energy + Delta-G solvation = -3785.105081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.24729 -41.41443 -39.48120 -38.28306 -35.99214 -35.30029 -34.56789 -32.74109 -32.53386 -29.29080 -28.33481 -28.17197 -25.90906 -25.53854 -24.58054 -23.57078 -23.21998 -22.72340 -20.26512 -19.85165 -19.27931 -18.96411 -18.45408 -18.00963 -17.17209 -16.94553 -16.54743 -16.34693 -15.72688 -15.51316 -15.32115 -15.17514 -14.63681 -14.52541 -14.44849 -14.22855 -13.62035 -13.39646 -13.28029 -13.08137 -12.88781 -12.75383 -12.59695 -12.50287 -12.39445 -12.18827 -12.15117 -12.08306 -11.96126 -11.65181 -11.55407 -11.54907 -11.36701 -11.35038 -10.96201 -10.22620 -9.96207 -9.04049 -7.96764 -5.25674 -0.04649 0.53704 1.46795 1.47663 1.54055 1.56701 1.91238 1.92341 2.53967 2.73383 2.90449 3.20584 3.34033 3.49452 3.68979 3.72657 3.82460 3.89814 3.91502 4.02051 4.06284 4.25215 4.30045 4.37180 4.39510 4.44213 4.57787 4.70835 4.78343 4.81542 4.82484 4.82906 4.94314 4.98204 5.01906 5.06666 5.13638 5.14716 5.25136 5.26437 5.37316 5.45527 5.52044 6.19820 6.25372 6.67248 7.00611 7.33584 8.04021 8.31253 9.26053 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.004166 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.218591 B = 6719.035283 C = 8977.037437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.129 4.129 4 C 0.120 3.880 5 N -0.601 5.601 6 C 0.609 3.391 7 O -0.555 6.555 8 C -0.044 4.044 9 C -0.182 4.182 10 C 0.009 3.991 11 C -0.095 4.095 12 C -0.164 4.164 13 C -0.156 4.156 14 O 0.120 5.880 15 N -0.346 5.346 16 C 0.081 3.919 17 C 0.175 3.825 18 H 0.053 0.947 19 N -0.719 5.719 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.064 4.064 23 N -0.963 5.963 24 Si 0.967 3.033 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.273 1.273 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.201 0.799 37 H 0.169 0.831 38 H 0.090 0.910 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.385 0.615 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 -17.842 12.146 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.397 3.603 7 O -0.434 6.434 8 C -0.202 4.202 9 C -0.204 4.204 10 C -0.054 4.054 11 C -0.114 4.114 12 C -0.201 4.201 13 C -0.193 4.193 14 O 0.043 5.957 15 N -0.047 5.047 16 C -0.045 4.045 17 C 0.064 3.936 18 H 0.072 0.928 19 N -0.361 5.361 20 C -0.378 4.378 21 H 0.088 0.912 22 C -0.256 4.256 23 N -0.613 5.613 24 Si 0.796 3.204 25 H -0.213 1.213 26 H -0.221 1.221 27 H -0.198 1.198 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.218 0.782 37 H 0.186 0.814 38 H 0.109 0.891 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.222 0.778 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.549 -17.084 11.684 20.854 hybrid contribution 0.136 0.212 -0.545 0.601 sum 2.685 -16.872 11.139 20.395 Atomic orbital electron populations 1.21762 0.92170 1.01828 1.02568 1.21696 0.97304 0.95956 0.93296 1.21682 1.00279 0.94282 1.02364 1.22331 0.95984 0.85748 0.96107 1.48633 1.51878 1.14314 1.18440 1.16681 0.79374 0.80030 0.84255 1.90735 1.53470 1.80230 1.18951 1.23478 1.04937 0.98510 0.93234 1.22531 1.02596 0.91872 1.03428 1.24136 0.99839 0.94730 0.86728 1.20776 1.05709 0.85366 0.99537 1.23213 0.94773 1.03533 0.98592 1.23242 0.97941 0.98999 0.99084 1.84774 1.53583 1.18195 1.39104 1.74380 1.09309 1.04482 1.16519 1.23677 0.99313 1.00364 0.81122 1.21384 0.92793 0.91214 0.88242 0.92848 1.42649 1.78829 1.12695 1.01937 1.19572 1.36489 0.96975 0.84780 0.91193 1.25436 1.02405 0.96136 1.01670 1.69788 1.52423 1.06077 1.33050 0.85244 0.76973 0.77545 0.80626 1.21319 1.22084 1.19846 0.93099 0.92787 0.90130 0.89960 0.93581 0.92963 0.90182 0.89379 0.78210 0.81352 0.89124 0.85079 0.84855 0.89457 0.92237 0.89761 0.77798 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.22 71.98 0.59 -2.98 16 2 C -0.08 -2.62 0.95 -51.29 -0.05 -2.67 16 3 C -0.13 -4.12 7.04 71.98 0.51 -3.62 16 4 C 0.12 3.67 6.28 86.53 0.54 4.21 16 5 N -0.60 -21.08 3.29 -811.90 -2.67 -23.75 16 6 C 0.61 21.70 7.92 86.93 0.69 22.39 16 7 O -0.56 -21.05 17.29 -3.71 -0.06 -21.12 16 8 C -0.04 -1.43 7.05 42.96 0.30 -1.12 16 9 C -0.18 -4.39 10.92 22.60 0.25 -4.15 16 10 C 0.01 0.18 6.93 25.01 0.17 0.35 16 11 C -0.10 -1.13 6.26 -11.54 -0.07 -1.20 16 12 C -0.16 -1.70 10.18 30.62 0.31 -1.39 16 13 C -0.16 -1.55 10.24 30.62 0.31 -1.23 16 14 O 0.12 3.34 10.96 71.86 0.79 4.12 16 15 N -0.35 -11.62 9.18 -49.51 -0.45 -12.08 16 16 C 0.08 3.16 6.42 86.80 0.56 3.72 16 17 C 0.18 7.07 3.16 46.27 0.15 7.22 16 18 H 0.05 2.27 7.82 -2.39 -0.02 2.25 16 19 N -0.72 -35.39 4.97 -316.91 -1.57 -36.96 16 20 C -0.25 -13.53 9.96 84.03 0.84 -12.70 16 21 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 23 N -0.96 -57.54 13.06 21.65 0.28 -57.26 16 24 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.05 1.56 8.00 -2.38 -0.02 1.54 16 33 H 0.05 1.96 6.90 -2.39 -0.02 1.94 16 34 H 0.08 2.26 7.68 -2.39 -0.02 2.25 16 35 H 0.09 2.51 7.60 -2.39 -0.02 2.49 16 36 H 0.20 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.17 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.25 8.01 -2.39 -0.02 1.23 16 39 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.08 3.49 5.51 -2.39 -0.01 3.47 16 44 H 0.39 19.79 5.13 -92.71 -0.48 19.32 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -68.78 370.78 4.43 -64.35 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.53 Total: 31.11 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.56 Total: 3.71 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -4.42 Total: -130.05 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.72 Total: -16.99 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -68.78 4.43 -64.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996106295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.844 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds