Wall clock time and date at job start Tue Mar 31 2020 12:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38153 * 120.49403 * 2 1 4 4 N 1.31814 * 120.89473 * 180.31322 * 3 2 1 5 5 C 1.31823 * 122.04680 * 359.71022 * 4 3 2 6 6 C 1.38145 * 120.89392 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.49899 * 179.97438 * 6 5 4 8 8 C 1.39809 * 120.50193 * 179.74716 * 2 1 3 9 9 C 1.48148 * 120.92563 * 359.97438 * 8 2 1 10 10 O 1.21510 * 119.99924 * 269.72412 * 9 8 2 11 11 N 1.34781 * 119.99972 * 89.71722 * 9 8 2 12 12 C 1.46490 * 120.00160 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99690 * 180.02562 * 11 9 8 14 14 H 1.09002 * 110.89088 * 3.87427 * 13 11 9 15 15 C 1.55127 * 110.94211 * 127.95664 * 13 11 9 16 16 N 1.47424 * 104.72465 * 155.28509 * 15 13 11 17 17 C 1.36931 * 125.65107 * 155.81754 * 16 15 13 18 18 H 1.08002 * 120.00098 * 359.71936 * 17 16 15 19 19 C 1.38812 * 120.00429 * 179.71821 * 17 16 15 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48501 * 109.46922 * 269.71949 * 21 19 17 23 23 H 1.48496 * 109.47354 * 29.72145 * 21 19 17 24 24 H 1.48501 * 109.47428 * 149.72253 * 21 19 17 25 25 C 1.47026 * 108.70283 * 335.55479 * 16 15 13 26 26 C 1.54322 * 107.27105 * 1.28275 * 25 16 15 27 27 H 1.09000 * 110.72605 * 263.83593 * 26 25 16 28 28 O 1.42900 * 110.72159 * 140.72986 * 26 25 16 29 29 H 1.09003 * 109.47565 * 270.24724 * 1 2 3 30 30 H 1.08997 * 109.47630 * 30.25274 * 1 2 3 31 31 H 1.09007 * 109.47030 * 150.24902 * 1 2 3 32 32 H 1.07998 * 119.56018 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.54724 * 180.02562 * 5 4 3 34 34 H 1.09009 * 109.47290 * 270.02794 * 7 6 5 35 35 H 1.08999 * 109.46929 * 30.02125 * 7 6 5 36 36 H 1.08992 * 109.47713 * 150.02472 * 7 6 5 37 37 H 1.08998 * 109.47690 * 270.00244 * 12 11 9 38 38 H 1.09008 * 109.47407 * 29.99992 * 12 11 9 39 39 H 1.09003 * 109.47358 * 150.00030 * 12 11 9 40 40 H 1.08998 * 110.49534 * 36.44540 * 15 13 11 41 41 H 1.08998 * 110.34323 * 274.04745 * 15 13 11 42 42 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.88585 * 120.70557 * 25 16 15 44 44 H 1.09006 * 109.87883 * 241.71762 * 25 16 15 45 45 H 0.96703 * 113.99125 * 61.46010 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1904 0.0000 4 7 3.5261 1.1997 -0.0062 5 6 4.2334 0.0872 -0.0070 6 6 3.6136 -1.1474 -0.0018 7 6 4.4309 -2.4135 -0.0033 8 6 2.2166 -1.2046 0.0053 9 6 1.5081 -2.5056 0.0116 10 8 1.2224 -3.0367 1.0665 11 7 1.1803 -3.1001 -1.1527 12 6 1.5251 -2.4601 -2.4245 13 6 0.4791 -4.3864 -1.1464 14 1 0.2373 -4.6923 -0.1285 15 6 -0.7933 -4.3286 -2.0319 16 7 -1.0380 -5.7275 -2.4279 17 6 -2.2470 -6.2517 -2.8000 18 1 -3.1260 -5.6243 -2.8155 19 6 -2.3431 -7.5896 -3.1574 20 7 -1.2718 -8.3541 -3.1391 21 14 -3.9909 -8.3028 -3.6725 22 1 -4.6953 -8.8343 -2.4781 23 1 -4.8155 -7.2400 -4.3014 24 1 -3.7719 -9.4014 -4.6474 25 6 0.2323 -6.4649 -2.3633 26 6 1.3111 -5.4768 -1.8719 27 1 1.8554 -5.0498 -2.7142 28 8 2.2095 -6.1191 -0.9650 29 1 -0.3634 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8923 -0.5100 32 1 1.6689 2.1262 0.0004 33 1 5.3120 0.1419 -0.0117 34 1 4.6236 -2.7204 -1.0314 35 1 5.3779 -2.2352 0.5061 36 1 3.8826 -3.2006 0.5142 37 1 0.7084 -1.8094 -2.7371 38 1 2.4327 -1.8694 -2.2997 39 1 1.6908 -3.2250 -3.1831 40 1 -0.6179 -3.7103 -2.9122 41 1 -1.6367 -3.9436 -1.4587 42 1 -1.3388 -9.2890 -3.3892 43 1 0.1436 -7.2954 -1.6630 44 1 0.4935 -6.8406 -3.3526 45 1 2.6975 -6.8586 -1.3525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047457313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:10 Heat of formation + Delta-G solvation = -14.664533 kcal Electronic energy + Delta-G solvation = -27932.167166 eV Core-core repulsion = 24143.759722 eV Total energy + Delta-G solvation = -3788.407444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06530 -39.45278 -37.83029 -35.28783 -34.84597 -33.94075 -33.71557 -31.87357 -28.85881 -27.98667 -27.46316 -27.40011 -26.68511 -24.82609 -23.77405 -21.47956 -20.86198 -20.49550 -19.19686 -17.80924 -17.25143 -17.13901 -16.82816 -16.14302 -15.34468 -14.82907 -14.73733 -14.65645 -14.54427 -14.07951 -13.82477 -13.55657 -13.46495 -13.09915 -12.98989 -12.77483 -12.70640 -12.64992 -12.47637 -12.39015 -12.30810 -12.01713 -11.65435 -11.43677 -11.28836 -10.92310 -10.85773 -10.32926 -10.16508 -10.05827 -9.88195 -9.73489 -9.48312 -9.32032 -9.01895 -8.77520 -8.47127 -6.98652 -5.82140 -3.17635 0.81735 0.83581 2.52904 2.94417 3.35248 3.40329 3.41906 3.48146 4.16302 4.27102 4.40627 4.49457 4.50724 4.62790 4.74480 4.97222 5.06282 5.15965 5.19497 5.29981 5.37648 5.40322 5.41505 5.43603 5.44493 5.53144 5.57202 5.69337 5.72716 5.82559 5.88755 5.92699 5.98738 6.01579 6.03147 6.39461 6.40976 6.49743 6.76455 7.28233 7.38166 7.42747 7.67300 7.70343 8.09369 8.13278 8.14516 9.08158 9.68394 10.30861 11.29238 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.003404 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.389432 B = 8222.741241 C = 8914.192121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.091 3.909 4 N -0.472 5.472 5 C 0.091 3.909 6 C -0.100 4.100 7 C -0.118 4.118 8 C -0.073 4.073 9 C 0.566 3.434 10 O -0.523 6.523 11 N -0.590 5.590 12 C 0.075 3.925 13 C 0.133 3.867 14 H 0.116 0.884 15 C 0.133 3.867 16 N -0.599 5.599 17 C -0.232 4.232 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.287 1.287 23 H -0.280 1.280 24 H -0.290 1.290 25 C 0.152 3.848 26 C 0.065 3.935 27 H 0.056 0.944 28 O -0.561 6.561 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.049 0.951 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.597 15.782 2.070 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.102 4.102 3 C -0.066 4.066 4 N -0.179 5.179 5 C -0.066 4.066 6 C -0.103 4.103 7 C -0.175 4.175 8 C -0.085 4.085 9 C 0.353 3.647 10 O -0.398 6.398 11 N -0.322 5.322 12 C -0.068 4.068 13 C 0.029 3.971 14 H 0.134 0.866 15 C 0.006 3.994 16 N -0.326 5.326 17 C -0.360 4.360 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.746 3.254 22 H -0.214 1.214 23 H -0.206 1.206 24 H -0.216 1.216 25 C 0.027 3.973 26 C 0.005 3.995 27 H 0.073 0.927 28 O -0.365 6.365 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 10.554 16.528 2.949 19.831 hybrid contribution -1.000 -1.664 -0.805 2.102 sum 9.554 14.864 2.144 17.799 Atomic orbital electron populations 1.20830 0.89593 1.03654 1.03432 1.20977 0.97773 0.92579 0.98873 1.22586 0.89772 0.97117 0.97105 1.67533 1.08241 1.31456 1.10702 1.22590 1.00280 0.86613 0.97160 1.20995 0.92670 0.97731 0.98858 1.20830 0.99526 0.93980 1.03195 1.20173 0.93722 0.93822 1.00741 1.18120 0.78668 0.83868 0.84073 1.90822 1.53859 1.64533 1.30626 1.47716 1.57146 1.21733 1.05620 1.21799 1.00479 0.98437 0.86045 1.22529 0.91769 0.80188 1.02628 0.86608 1.21799 0.93709 0.88966 0.94951 1.44227 1.05420 1.03700 1.79277 1.19065 0.85105 0.93404 1.38433 0.90114 1.24824 0.97707 0.96214 1.01441 1.69931 1.26808 1.06221 1.53938 0.86066 0.82670 0.78669 0.78022 1.21444 1.20594 1.21604 1.21862 0.82926 0.92211 1.00340 1.23551 0.91104 0.94109 0.90731 0.92670 1.86488 1.58610 1.50581 1.40870 0.90142 0.90429 0.90950 0.82321 0.82339 0.90327 0.90575 0.90520 0.92124 0.91553 0.90216 0.95550 0.93299 0.93584 0.92119 0.93338 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.67 36.01 0.35 -0.83 16 2 C -0.10 -1.13 5.93 -104.07 -0.62 -1.75 16 3 C 0.09 0.94 10.86 -17.59 -0.19 0.75 16 4 N -0.47 -5.34 10.34 -13.30 -0.14 -5.48 16 5 C 0.09 0.94 10.86 -17.59 -0.19 0.74 16 6 C -0.10 -1.15 5.52 -104.06 -0.57 -1.72 16 7 C -0.12 -1.23 9.68 36.01 0.35 -0.88 16 8 C -0.07 -0.97 3.95 -104.65 -0.41 -1.38 16 9 C 0.57 9.09 4.37 -12.19 -0.05 9.04 16 10 O -0.52 -10.52 16.48 5.36 0.09 -10.43 16 11 N -0.59 -9.00 2.91 -172.34 -0.50 -9.50 16 12 C 0.08 0.90 8.86 59.84 0.53 1.43 16 13 C 0.13 2.47 3.20 -65.66 -0.21 2.26 16 14 H 0.12 2.52 7.02 -51.93 -0.36 2.16 16 15 C 0.13 2.66 6.79 -2.41 -0.02 2.65 16 16 N -0.60 -14.78 3.39 -169.93 -0.58 -15.35 16 17 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 20 N -0.92 -26.21 10.31 55.49 0.57 -25.64 16 21 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.15 3.54 5.14 -3.06 -0.02 3.52 16 26 C 0.07 1.21 3.88 -24.89 -0.10 1.12 16 27 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 28 O -0.56 -10.04 13.40 -35.23 -0.47 -10.51 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.07 0.84 7.17 -51.92 -0.37 0.46 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.08 1.02 7.17 -51.93 -0.37 0.65 16 37 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.07 0.69 6.56 -51.92 -0.34 0.35 16 39 H 0.08 0.94 6.41 -51.93 -0.33 0.61 16 40 H 0.03 0.50 7.01 -51.93 -0.36 0.13 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 44 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 45 H 0.37 5.18 9.11 45.56 0.42 5.60 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -33.48 364.79 -7.71 -41.19 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.75 Total: 5.41 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.40 Total: 8.25 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.64 Total: -55.97 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.38 Total: -20.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.48 -7.71 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047457313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.525 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds