Wall clock time and date at job start Tue Mar 31 2020 12:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 113.30993 * 2 1 4 4 C 1.55778 * 114.08119 * 132.78720 * 2 1 3 5 5 H 1.08990 * 114.29228 * 37.08267 * 4 2 1 6 6 N 1.46499 * 114.12519 * 264.53368 * 4 2 1 7 7 C 1.34780 * 120.00088 * 161.35895 * 6 4 2 8 8 O 1.21613 * 119.99522 * 359.97438 * 7 6 4 9 9 C 1.47414 * 120.00083 * 179.97438 * 7 6 4 10 10 C 1.36092 * 126.44755 * 179.97438 * 9 7 6 11 11 O 1.34259 * 106.95152 * 180.02562 * 10 9 7 12 12 C 1.34054 * 108.22375 * 359.97438 * 11 10 9 13 13 N 1.29934 * 109.24573 * 0.02562 * 12 11 10 14 14 C 1.50012 * 83.85845 * 150.81611 * 4 2 1 15 15 H 1.08995 * 112.50985 * 76.12545 * 14 4 2 16 16 C 1.51213 * 126.15682 * 219.61657 * 14 4 2 17 17 C 1.54454 * 106.01261 * 162.22267 * 16 14 4 18 18 C 1.52498 * 111.86898 * 302.97978 * 17 16 14 19 19 N 1.48408 * 111.86881 * 47.42177 * 18 17 16 20 20 C 1.36932 * 123.17119 * 128.19426 * 19 18 17 21 21 H 1.07997 * 120.00501 * 206.38801 * 20 19 18 22 22 C 1.38819 * 120.00078 * 26.38749 * 20 19 18 23 23 N 1.31627 * 119.99576 * 12.36803 * 22 20 19 24 24 Si 1.86796 * 120.00394 * 192.36299 * 22 20 19 25 25 H 1.48507 * 109.46850 * 59.99995 * 24 22 20 26 26 H 1.48494 * 109.47199 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47210 * 300.00427 * 24 22 20 28 28 C 1.45377 * 113.66126 * 308.16056 * 19 18 17 29 29 H 1.09000 * 112.08467 * 300.24873 * 28 19 18 30 30 H 1.08995 * 109.46901 * 306.72228 * 1 2 3 31 31 H 1.09004 * 109.46873 * 66.71753 * 1 2 3 32 32 H 1.08990 * 109.46831 * 186.71463 * 1 2 3 33 33 H 1.08998 * 109.47284 * 199.80609 * 3 2 1 34 34 H 1.09007 * 109.46679 * 319.80248 * 3 2 1 35 35 H 1.08991 * 109.47516 * 79.80005 * 3 2 1 36 36 H 0.97007 * 120.00363 * 341.35550 * 6 4 2 37 37 H 1.08002 * 126.52714 * 0.02562 * 10 9 7 38 38 H 1.08003 * 125.37526 * 180.02562 * 12 11 10 39 39 H 1.08998 * 110.10429 * 280.57870 * 16 14 4 40 40 H 1.09004 * 110.09972 * 42.24203 * 16 14 4 41 41 H 1.08996 * 108.74801 * 182.73349 * 17 16 14 42 42 H 1.08997 * 109.67037 * 63.84678 * 17 16 14 43 43 H 1.09002 * 109.00442 * 286.80268 * 18 17 16 44 44 H 1.09002 * 108.93735 * 167.99384 * 18 17 16 45 45 H 0.97004 * 119.99433 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1355 1.4051 0.0000 4 6 2.1657 -0.9661 1.0437 5 1 1.6251 -1.9034 1.1746 6 7 2.5263 -0.3254 2.3109 7 6 2.7257 -1.0756 3.4126 8 8 2.6057 -2.2845 3.3549 9 6 3.0891 -0.4310 4.6876 10 6 3.3191 -1.0574 5.8736 11 8 3.6180 -0.1028 6.7691 12 6 3.5733 1.0840 6.1473 13 7 3.2575 0.9025 4.9001 14 6 3.2891 -1.0394 0.0522 15 1 3.9182 -0.1494 0.0679 16 6 4.0723 -2.2785 -0.3185 17 6 4.7717 -1.9558 -1.6573 18 6 3.7734 -1.5515 -2.7368 19 7 2.8013 -0.5451 -2.2418 20 6 2.5487 0.6345 -2.8897 21 1 2.1966 1.4911 -2.3343 22 6 2.7452 0.7293 -4.2606 23 7 2.9359 -0.3597 -4.9750 24 14 2.7390 2.4022 -5.0917 25 1 3.8174 3.2451 -4.5155 26 1 2.9683 2.2319 -6.5489 27 1 1.4258 3.0596 -4.8712 28 6 2.1421 -0.9300 -1.0046 29 1 1.5851 -1.8611 -1.1095 30 1 -0.3633 0.6145 0.8237 31 1 -0.3633 0.4062 -0.9440 32 1 -0.3632 -1.0205 0.1202 33 1 3.1672 1.3563 -0.3482 34 1 1.5583 2.0494 -0.6633 35 1 2.1122 1.8109 1.0113 36 1 2.6217 0.6389 2.3570 37 1 3.2704 -2.1203 6.0593 38 1 3.7689 2.0401 6.6100 39 1 4.8233 -2.4889 0.4430 40 1 3.3989 -3.1288 -0.4273 41 1 5.3130 -2.8407 -1.9920 42 1 5.4828 -1.1424 -1.5130 43 1 3.2303 -2.4368 -3.0675 44 1 4.3178 -1.1327 -3.5832 45 1 3.0736 -0.2934 -5.9329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087276830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:14 Heat of formation + Delta-G solvation = 56.309116 kcal Electronic energy + Delta-G solvation = -28031.532737 eV Core-core repulsion = 24246.202941 eV Total energy + Delta-G solvation = -3785.329796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.66365 -40.97865 -38.82789 -35.30654 -35.09049 -33.15651 -32.92363 -30.64785 -30.09860 -29.34185 -27.25239 -25.89069 -25.21084 -23.63310 -22.95774 -22.09073 -20.89729 -20.10595 -19.32216 -18.93645 -17.96736 -16.98078 -16.77553 -16.45838 -15.81066 -15.29828 -14.83014 -14.53506 -14.22009 -14.08066 -13.89133 -13.75410 -13.43093 -13.08241 -12.68897 -12.58044 -12.44821 -11.89622 -11.74927 -11.61960 -11.30806 -11.13462 -11.11052 -11.02326 -10.83318 -10.73114 -10.41861 -10.29623 -10.14685 -10.01991 -9.93347 -9.83017 -9.44341 -9.35028 -8.83441 -8.60352 -8.38663 -6.55021 -5.72328 -3.16008 0.90990 1.83933 2.41741 3.20495 3.29065 3.38971 3.45111 3.45285 3.82216 4.50924 4.60455 4.69546 4.73445 4.99097 5.19201 5.23742 5.26694 5.36169 5.46296 5.62064 5.76682 5.83388 5.89339 5.93636 6.03551 6.05002 6.14722 6.21166 6.31352 6.40420 6.43057 6.51842 6.62392 6.64680 6.71042 6.76122 6.80072 6.89842 7.07542 7.13044 7.20464 7.46408 7.69719 7.74030 7.84262 8.25804 8.45287 9.21681 9.87393 10.52895 11.35539 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003562 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.938736 B = 7859.192654 C = 8383.771344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.140 3.860 5 H 0.113 0.887 6 N -0.692 5.692 7 C 0.597 3.403 8 O -0.541 6.541 9 C -0.069 4.069 10 C 0.011 3.989 11 O -0.202 6.202 12 C 0.176 3.824 13 N -0.465 5.465 14 C -0.169 4.169 15 H 0.094 0.906 16 C -0.088 4.088 17 C -0.136 4.136 18 C 0.165 3.835 19 N -0.569 5.569 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.001 4.001 23 N -0.908 5.908 24 Si 0.900 3.100 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.284 1.284 28 C 0.152 3.848 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.407 0.593 37 H 0.230 0.770 38 H 0.254 0.746 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.015 0.985 44 H 0.092 0.908 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 1.320 20.287 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.066 4.066 3 C -0.178 4.178 4 C 0.036 3.964 5 H 0.131 0.869 6 N -0.342 5.342 7 C 0.381 3.619 8 O -0.419 6.419 9 C -0.189 4.189 10 C -0.063 4.063 11 O -0.087 6.087 12 C -0.053 4.053 13 N -0.195 5.195 14 C -0.191 4.191 15 H 0.112 0.888 16 C -0.125 4.125 17 C -0.175 4.175 18 C 0.041 3.959 19 N -0.291 5.291 20 C -0.371 4.371 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.553 5.553 24 Si 0.730 3.270 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.043 3.957 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.244 0.756 37 H 0.246 0.754 38 H 0.270 0.730 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.110 0.890 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.507 0.979 19.524 19.555 hybrid contribution 0.198 0.829 -0.032 0.853 sum 0.704 1.808 19.492 19.588 Atomic orbital electron populations 1.21709 0.94418 1.01232 1.01664 1.21848 0.94715 0.95405 0.94630 1.21660 1.02534 0.93995 0.99617 1.22521 0.97605 0.96866 0.79432 0.86945 1.45920 1.68223 1.11152 1.08856 1.16787 0.77224 0.86056 0.81786 1.90817 1.52785 1.13169 1.85108 1.21982 1.10614 0.89540 0.96766 1.25322 0.99050 0.95156 0.86783 1.84440 1.66791 1.16865 1.40601 1.28135 1.00064 0.89672 0.87439 1.70782 1.15874 1.16225 1.16592 1.23401 0.97913 0.99651 0.98127 0.88772 1.21187 0.98221 0.96629 0.96498 1.22174 0.99339 0.99522 0.96464 1.20874 0.89737 0.91148 0.94185 1.43838 1.41373 1.19358 1.24502 1.19269 1.40377 0.88187 0.89261 0.90647 1.25089 1.01829 0.96603 0.96356 1.69960 1.53598 1.25974 1.05736 0.86404 0.77995 0.84071 0.78498 1.21123 1.21745 1.20995 1.21400 0.92345 0.94958 0.87000 0.93138 0.93399 0.91729 0.92938 0.90578 0.91542 0.94216 0.75576 0.75371 0.73010 0.94208 0.92617 0.93344 0.93189 0.96686 0.89030 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.21 37.16 0.34 -1.72 16 2 C -0.06 -1.09 1.36 -159.15 -0.22 -1.31 16 3 C -0.12 -1.99 6.94 37.16 0.26 -1.73 16 4 C 0.14 2.28 3.46 -71.83 -0.25 2.03 16 5 H 0.11 1.93 7.56 -51.93 -0.39 1.54 16 6 N -0.69 -10.20 5.33 -58.74 -0.31 -10.52 16 7 C 0.60 8.99 7.81 -12.52 -0.10 8.89 16 8 O -0.54 -9.47 16.56 5.27 0.09 -9.39 16 9 C -0.07 -0.85 6.99 -83.02 -0.58 -1.43 16 10 C 0.01 0.10 11.95 29.96 0.36 0.46 16 11 O -0.20 -1.65 10.73 6.49 0.07 -1.58 16 12 C 0.18 1.29 13.19 51.96 0.69 1.98 16 13 N -0.47 -5.17 11.06 -11.48 -0.13 -5.30 16 14 C -0.17 -3.07 2.88 -95.83 -0.28 -3.35 16 15 H 0.09 1.82 6.07 -51.93 -0.32 1.51 16 16 C -0.09 -1.60 6.09 -26.87 -0.16 -1.77 16 17 C -0.14 -2.66 5.94 -26.23 -0.16 -2.82 16 18 C 0.17 3.91 5.30 -3.25 -0.02 3.90 16 19 N -0.57 -13.65 2.87 -169.43 -0.49 -14.14 16 20 C -0.24 -6.28 9.08 -15.06 -0.14 -6.42 16 21 H 0.08 1.88 5.15 -52.49 -0.27 1.61 16 22 C 0.00 -0.02 5.14 -17.42 -0.09 -0.11 16 23 N -0.91 -25.97 10.98 55.49 0.61 -25.36 16 24 Si 0.90 21.39 29.57 -169.99 -5.03 16.36 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 C 0.15 3.07 2.99 -72.14 -0.22 2.86 16 29 H 0.05 1.08 7.96 -51.93 -0.41 0.66 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.08 1.40 5.76 -51.93 -0.30 1.10 16 34 H 0.07 1.14 6.96 -51.92 -0.36 0.78 16 35 H 0.04 0.55 6.51 -51.93 -0.34 0.21 16 36 H 0.41 5.61 6.45 -40.82 -0.26 5.35 16 37 H 0.23 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.25 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.01 7.99 -51.93 -0.41 0.60 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -31.67 354.62 -6.72 -38.39 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.32 Total: 6.74 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -0.55 Total: -0.55 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.32 Total: -55.32 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.16 Total: -10.97 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.67 -6.72 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087276830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.699 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds