Wall clock time and date at job start Tue Mar 31 2020 13:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47039 * 2 1 4 4 C 1.52992 * 109.47145 * 239.99680 * 2 1 3 5 5 C 1.50698 * 109.47389 * 60.00302 * 4 2 1 6 6 H 1.08006 * 119.99728 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00290 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99882 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99806 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47178 * 60.00096 * 9 7 5 11 11 H 1.48501 * 109.46988 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47394 * 299.99892 * 9 7 5 13 13 C 1.52998 * 109.46905 * 119.99539 * 2 1 3 14 14 N 1.46501 * 109.47504 * 300.00190 * 13 2 1 15 15 C 1.34776 * 120.00393 * 180.02562 * 14 13 2 16 16 O 1.21589 * 119.99487 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00352 * 179.97438 * 15 14 13 18 18 N 1.40108 * 119.99798 * 0.02562 * 17 15 14 19 19 C 1.34780 * 119.99809 * 179.97438 * 18 17 15 20 20 O 1.21557 * 120.00061 * 0.02562 * 19 18 17 21 21 C 1.47845 * 119.99555 * 179.97438 * 19 18 17 22 22 C 1.39575 * 120.13807 * 180.02562 * 21 19 18 23 23 C 1.37966 * 119.85100 * 179.97438 * 22 21 19 24 24 C 1.38360 * 120.14194 * 359.97438 * 23 22 21 25 25 C 1.38356 * 120.29558 * 0.02562 * 24 23 22 26 26 C 1.37965 * 120.14370 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.47473 * 300.00299 * 1 2 3 28 28 H 1.09008 * 109.47480 * 60.00385 * 1 2 3 29 29 H 1.09001 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47554 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47125 * 299.99833 * 3 2 1 32 32 H 1.08996 * 109.47230 * 59.99563 * 3 2 1 33 33 H 1.09006 * 109.47157 * 180.02562 * 4 2 1 34 34 H 1.08992 * 109.47443 * 299.99921 * 4 2 1 35 35 H 0.97004 * 119.99654 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47221 * 180.02562 * 13 2 1 37 37 H 1.09005 * 109.47302 * 60.00358 * 13 2 1 38 38 H 0.97001 * 119.99906 * 0.02562 * 14 13 2 39 39 H 0.96993 * 120.00514 * 179.97438 * 17 15 14 40 40 H 0.97002 * 119.99975 * 359.97438 * 18 17 15 41 41 H 1.07998 * 120.08057 * 359.70005 * 22 21 19 42 42 H 1.08000 * 119.93065 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.85327 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.93243 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.07139 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2472 0.3978 -5.2571 10 1 1.7422 1.7979 -5.2577 11 1 1.7423 -0.3022 -6.4696 12 1 -0.2378 0.3978 -5.2567 13 6 2.0399 -0.7211 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8775 -0.4906 3.6696 16 8 2.5773 -1.4786 3.7812 17 7 1.4287 0.1450 4.7700 18 7 0.6227 1.2839 4.6413 19 6 0.1735 1.9192 5.7418 20 8 0.4679 1.5045 6.8458 21 6 -0.6765 3.1213 5.6060 22 6 -1.1430 3.7819 6.7436 23 6 -1.9354 4.9034 6.6100 24 6 -2.2673 5.3737 5.3518 25 6 -1.8082 4.7235 4.2201 26 6 -1.0151 3.6010 4.3398 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7217 -1.2489 34 1 1.6767 -1.7489 -1.2491 35 1 2.8608 -1.8831 -4.7335 36 1 3.1299 -0.7208 1.2496 37 1 1.6766 -1.7489 1.2494 38 1 0.9936 0.7579 2.3564 39 1 1.6630 -0.1862 5.6510 40 1 0.3881 1.6150 3.7603 41 1 -0.8880 3.4135 7.7262 42 1 -2.2967 5.4158 7.4893 43 1 -2.8882 6.2518 5.2526 44 1 -2.0705 5.0959 3.2409 45 1 -0.6576 3.0941 3.4556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807593473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:20 Heat of formation + Delta-G solvation = -12.428493 kcal Electronic energy + Delta-G solvation = -26342.121316 eV Core-core repulsion = 22553.810834 eV Total energy + Delta-G solvation = -3788.310482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95297 -39.89997 -38.62013 -37.30215 -35.92188 -33.63697 -32.54329 -32.05389 -31.42760 -30.23991 -27.18101 -26.62066 -26.25858 -24.48409 -23.15357 -22.96071 -21.39999 -21.05992 -19.72989 -18.29718 -18.16929 -17.15429 -16.39542 -16.12298 -15.95932 -15.77122 -15.24127 -15.10591 -14.96626 -14.54463 -14.33770 -14.12422 -13.89393 -13.85754 -13.18659 -13.11146 -12.85373 -12.38571 -12.17536 -12.11205 -11.60227 -11.60035 -11.23124 -11.07235 -10.93708 -10.73596 -10.70589 -10.49311 -10.33716 -10.32053 -9.96741 -9.53726 -9.47852 -9.29572 -9.04558 -9.00615 -8.47494 -8.40166 -6.04220 -4.06092 0.33817 0.87318 1.56355 2.34653 3.00557 3.10102 3.28381 3.34571 3.35001 3.40097 3.92128 4.29885 4.40772 4.44390 4.57417 4.76455 4.86290 4.97590 5.25932 5.31054 5.34720 5.49072 5.53230 5.62261 5.75658 5.85023 5.95801 6.03528 6.03867 6.12066 6.20968 6.29493 6.37051 6.39581 6.51086 6.52802 6.65201 6.95534 6.98626 7.02513 7.05031 7.45223 7.58458 7.70054 7.93590 8.02965 8.34277 8.44721 8.98266 9.57243 11.07117 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002844 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.665994 B = 9842.181213 C =11577.486694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.143 3.857 14 N -0.734 5.734 15 C 0.709 3.291 16 O -0.569 6.569 17 N -0.535 5.535 18 N -0.523 5.523 19 C 0.562 3.438 20 O -0.532 6.532 21 C -0.129 4.129 22 C -0.056 4.056 23 C -0.127 4.127 24 C -0.091 4.091 25 C -0.123 4.123 26 C -0.086 4.086 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.387 0.613 39 H 0.441 0.559 40 H 0.420 0.580 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 14.282 18.074 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.020 3.980 14 N -0.391 5.391 15 C 0.408 3.592 16 O -0.443 6.443 17 N -0.293 5.293 18 N -0.274 5.274 19 C 0.349 3.651 20 O -0.408 6.408 21 C -0.133 4.133 22 C -0.075 4.075 23 C -0.145 4.145 24 C -0.109 4.109 25 C -0.141 4.141 26 C -0.105 4.105 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.223 0.777 39 H 0.287 0.713 40 H 0.262 0.738 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.264 13.094 18.591 24.554 hybrid contribution -0.605 0.851 -1.137 1.544 sum -9.869 13.945 17.454 24.423 Atomic orbital electron populations 1.21770 0.95244 1.01361 1.00035 1.20937 0.95482 0.95903 0.95024 1.21769 1.00788 0.95816 1.00035 1.19083 0.96468 0.95275 0.89273 1.21117 1.31413 1.12146 0.90484 0.92311 1.25010 0.95279 0.95057 0.99090 1.69952 1.36740 1.22927 1.23627 0.86709 0.79125 0.79754 0.82684 1.20329 1.21390 1.20326 1.21635 0.99063 0.95860 0.81461 1.45437 1.55857 1.32948 1.04830 1.15811 0.80557 0.82649 0.80147 1.91038 1.42532 1.26642 1.84078 1.44671 1.52215 1.22360 1.10097 1.44778 1.49671 1.22803 1.10159 1.18340 0.80082 0.83281 0.83360 1.90812 1.58304 1.66597 1.25054 1.19622 1.02183 0.96609 0.94890 1.21278 0.94122 0.93667 0.98407 1.21206 0.98677 0.96613 0.98004 1.21461 0.97810 0.99139 0.92504 1.21179 0.97894 0.95549 0.99452 1.21346 0.96862 0.96349 0.95925 0.95666 0.91238 0.93144 0.93143 0.91239 0.95666 0.96213 0.96214 0.92921 0.91462 0.91461 0.77734 0.71344 0.73773 0.84392 0.85036 0.85288 0.84853 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 2 C -0.07 -1.28 0.54 -154.51 -0.08 -1.37 16 3 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.08 7.65 -34.44 -0.26 -13.34 16 6 H 0.06 1.42 5.68 -52.48 -0.30 1.12 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.14 2.38 4.56 -4.04 -0.02 2.36 16 14 N -0.73 -10.01 4.92 -65.22 -0.32 -10.33 16 15 C 0.71 10.66 8.68 -86.92 -0.75 9.91 16 16 O -0.57 -10.86 17.18 5.29 0.09 -10.77 16 17 N -0.54 -6.63 6.26 27.63 0.17 -6.46 16 18 N -0.52 -5.17 6.21 30.53 0.19 -4.98 16 19 C 0.56 6.03 7.89 -12.33 -0.10 5.93 16 20 O -0.53 -7.32 16.19 5.32 0.09 -7.23 16 21 C -0.13 -1.09 5.87 -104.97 -0.62 -1.71 16 22 C -0.06 -0.43 9.60 -39.18 -0.38 -0.81 16 23 C -0.13 -0.74 10.03 -39.64 -0.40 -1.14 16 24 C -0.09 -0.48 10.04 -39.49 -0.40 -0.88 16 25 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 26 C -0.09 -0.57 9.54 -39.19 -0.37 -0.94 16 27 H 0.02 0.31 6.86 -51.93 -0.36 -0.05 16 28 H 0.07 1.20 6.62 -51.92 -0.34 0.86 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.20 6.62 -51.92 -0.34 0.86 16 32 H 0.02 0.31 6.86 -51.93 -0.36 -0.05 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.39 4.23 4.08 -40.82 -0.17 4.06 16 39 H 0.44 5.53 8.10 -182.60 -1.48 4.05 16 40 H 0.42 3.19 4.74 -182.59 -0.86 2.32 16 41 H 0.14 1.07 7.65 -52.49 -0.40 0.67 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 44 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 45 H 0.13 0.59 6.41 -52.48 -0.34 0.25 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -32.78 369.88 -9.76 -42.55 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.89 Total: 5.48 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.39 Total: -4.35 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.78 Total: -46.83 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.78 -9.76 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807593473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.120 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds