Wall clock time and date at job start Tue Mar 31 2020 12:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47073 * 2 1 4 4 N 1.46500 * 109.54618 * 300.91598 * 3 2 1 5 5 C 1.34777 * 120.00311 * 304.18280 * 4 3 2 6 6 O 1.21580 * 119.99566 * 354.54516 * 5 4 3 7 7 N 1.34770 * 120.00090 * 174.81783 * 5 4 3 8 8 C 1.39245 * 119.99787 * 185.27388 * 7 5 4 9 9 C 1.39694 * 119.57550 * 185.71004 * 8 7 5 10 10 C 1.38646 * 119.49594 * 179.72813 * 9 8 7 11 11 C 1.38361 * 118.66749 * 0.52601 * 10 9 8 12 12 C 1.40568 * 119.13193 * 359.73651 * 11 10 9 13 13 C 1.41338 * 119.78606 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99729 * 359.97438 * 13 12 11 15 15 C 1.40018 * 120.00089 * 179.97438 * 13 12 11 16 16 N 1.30747 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00100 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46923 * 60.00561 * 17 15 13 19 19 H 1.48502 * 109.46948 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47198 * 300.00369 * 17 15 13 21 21 N 1.31910 * 119.58062 * 5.97119 * 8 7 5 22 22 C 1.53175 * 109.54387 * 61.09834 * 3 2 1 23 23 C 1.53286 * 109.06622 * 176.85131 * 22 3 2 24 24 O 1.42900 * 109.45730 * 302.44415 * 23 22 3 25 25 C 1.42904 * 114.10222 * 61.15842 * 24 23 22 26 26 C 1.53095 * 109.41199 * 298.84116 * 25 24 23 27 27 H 1.08998 * 109.47086 * 64.77460 * 1 2 3 28 28 H 1.09003 * 109.46893 * 184.77023 * 1 2 3 29 29 H 1.09001 * 109.46848 * 304.77100 * 1 2 3 30 30 H 1.09006 * 109.46893 * 240.00209 * 2 1 3 31 31 H 1.08996 * 109.47347 * 120.00464 * 2 1 3 32 32 H 0.96996 * 119.99967 * 124.17762 * 4 3 2 33 33 H 0.97000 * 120.00093 * 5.27093 * 7 5 4 34 34 H 1.07992 * 120.24966 * 359.96946 * 9 8 7 35 35 H 1.07998 * 120.66695 * 180.24353 * 10 9 8 36 36 H 1.08000 * 120.42936 * 179.75587 * 11 10 9 37 37 H 0.97001 * 119.99571 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.52127 * 296.84071 * 22 3 2 39 39 H 1.08999 * 109.52631 * 57.02473 * 22 3 2 40 40 H 1.08999 * 109.45594 * 182.44604 * 23 22 3 41 41 H 1.09006 * 109.46295 * 62.44516 * 23 22 3 42 42 H 1.08998 * 109.48364 * 178.85982 * 25 24 23 43 43 H 1.08999 * 109.48994 * 58.82785 * 25 24 23 44 44 H 1.08995 * 109.52357 * 297.70305 * 26 25 24 45 45 H 1.09001 * 109.57054 * 177.54304 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5346 2.1410 -1.1844 5 6 1.7709 1.6412 -2.4136 6 8 2.4859 0.6669 -2.5465 7 7 1.2189 2.2246 -3.4958 8 6 1.3721 1.6458 -4.7530 9 6 0.9006 2.3176 -5.8834 10 6 1.0591 1.7424 -7.1349 11 6 1.6744 0.5063 -7.2242 12 6 2.1223 -0.1216 -6.0490 13 6 2.7531 -1.3842 -6.1243 14 1 2.8893 -1.8635 -7.0824 15 6 3.2015 -2.0135 -4.9566 16 7 3.0361 -1.4334 -3.7966 17 14 4.0346 -3.6825 -5.0559 18 1 5.2535 -3.5779 -5.8977 19 1 4.4119 -4.1294 -3.6910 20 1 3.1002 -4.6671 -5.6580 21 7 1.9560 0.4679 -4.8607 22 6 1.5530 2.1581 1.2637 23 6 2.1345 3.5762 1.2916 24 8 3.5609 3.5069 1.2409 25 6 4.0734 2.8888 0.0588 26 6 3.5717 1.4444 -0.0186 27 1 -0.3633 0.4380 -0.9296 28 1 -0.3633 -1.0241 0.0855 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.0299 2.9632 -1.0840 33 1 0.7148 3.0477 -3.3990 34 1 0.4198 3.2794 -5.7836 35 1 0.7053 2.2469 -8.0218 36 1 1.8090 0.0304 -8.1843 37 1 3.3464 -1.8696 -2.9876 38 1 0.4642 2.2086 1.2570 39 1 1.8877 1.6102 2.1446 40 1 1.8272 4.0765 2.2100 41 1 1.7669 4.1364 0.4318 42 1 5.1630 2.8939 0.0890 43 1 3.7314 3.4398 -0.8173 44 1 3.9471 0.8821 0.8363 45 1 3.9254 0.9840 -0.9412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:52 Heat of formation + Delta-G solvation = -16.682905 kcal Electronic energy + Delta-G solvation = -28611.586070 eV Core-core repulsion = 24823.091103 eV Total energy + Delta-G solvation = -3788.494967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51117 -38.84606 -37.54515 -35.70387 -33.94840 -32.99128 -31.83732 -31.09440 -30.46242 -30.22336 -28.69504 -25.56019 -25.10002 -23.67183 -22.37216 -21.49372 -21.26465 -20.13047 -18.87362 -17.96559 -17.28642 -16.26331 -15.98238 -15.95612 -15.31396 -14.82920 -14.59679 -14.43394 -14.35048 -14.03234 -13.62585 -13.44410 -13.14562 -12.92828 -12.78574 -12.42180 -12.20112 -12.06172 -11.88743 -11.67407 -11.27403 -11.19862 -11.12320 -10.95272 -10.79877 -10.64324 -10.44132 -10.32939 -10.22652 -9.92087 -9.68755 -9.47187 -8.99855 -8.85573 -8.36756 -7.92623 -7.20299 -6.90294 -6.10267 -4.36790 2.86593 3.14964 3.17311 3.19624 3.26017 3.29621 3.89292 4.08188 4.22948 4.62826 4.75844 4.84583 4.91553 4.98233 5.08444 5.16904 5.43647 5.50351 5.58283 5.62962 5.70346 5.75585 5.87999 6.02454 6.07477 6.10698 6.13617 6.15433 6.26718 6.48280 6.49615 6.50107 6.63234 6.76461 6.85731 6.87316 7.12249 7.22936 7.25674 7.40732 7.64717 7.76925 7.83955 8.19775 8.32201 8.70112 8.82958 9.08601 9.63079 10.29030 10.50765 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.004970 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.170137 B = 5632.315745 C = 6766.307868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.208 3.792 4 N -0.752 5.752 5 C 0.669 3.331 6 O -0.459 6.459 7 N -0.675 5.675 8 C 0.388 3.612 9 C -0.359 4.359 10 C -0.036 4.036 11 C -0.307 4.307 12 C 0.272 3.728 13 C -0.426 4.426 14 H 0.080 0.920 15 C 0.059 3.941 16 N -0.649 5.649 17 Si 0.893 3.107 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 N -0.469 5.469 22 C -0.158 4.158 23 C 0.062 3.938 24 O -0.387 6.387 25 C 0.066 3.934 26 C -0.166 4.166 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.381 0.619 33 H 0.393 0.607 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.270 0.730 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 7.211 11.370 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.121 3.879 4 N -0.412 5.412 5 C 0.368 3.632 6 O -0.324 6.324 7 N -0.324 5.324 8 C 0.148 3.852 9 C -0.385 4.385 10 C -0.060 4.060 11 C -0.331 4.331 12 C 0.147 3.853 13 C -0.456 4.456 14 H 0.098 0.902 15 C -0.170 4.170 16 N -0.267 5.267 17 Si 0.718 3.282 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.193 1.193 21 N -0.188 5.188 22 C -0.196 4.196 23 C -0.015 4.015 24 O -0.306 6.306 25 C -0.011 4.011 26 C -0.205 4.205 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.213 0.787 33 H 0.225 0.775 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.021 5.804 12.421 13.858 hybrid contribution -0.781 0.502 -0.949 1.327 sum -2.802 6.306 11.473 13.388 Atomic orbital electron populations 1.21677 0.96180 1.00880 1.01134 1.21979 0.95871 0.95714 1.04088 1.19926 0.92746 0.92164 0.83062 1.45447 1.62063 1.29013 1.04673 1.16343 0.82698 0.84391 0.79781 1.91272 1.35195 1.23141 1.82755 1.42625 1.56531 1.27683 1.05533 1.18330 0.93284 0.91427 0.82140 1.20445 1.21685 1.03620 0.92763 1.20537 0.95748 0.94582 0.95142 1.21617 1.13858 0.98895 0.98684 1.18360 0.88989 0.92304 0.85621 1.19517 1.31414 1.00667 0.94029 0.90169 1.26139 0.96452 0.98723 0.95735 1.70332 1.26102 1.32706 0.97589 0.86631 0.80381 0.83117 0.78100 1.19255 1.20460 1.19290 1.68657 1.18660 1.06201 1.25243 1.22560 1.01537 0.97291 0.98228 1.22551 0.81693 0.95668 1.01562 1.87891 1.20157 1.80386 1.42172 1.22537 0.98614 0.92835 0.87068 1.22629 0.95606 0.97405 1.04828 0.92723 0.93367 0.93626 0.87819 0.92347 0.78675 0.77458 0.89303 0.88746 0.88697 0.91774 0.90193 0.89834 0.89208 0.93458 0.89327 0.93102 0.91213 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.47 37.16 0.35 -1.58 16 2 C -0.14 -2.04 4.70 -26.73 -0.13 -2.17 16 3 C 0.21 2.75 0.35 -131.64 -0.05 2.70 16 4 N -0.75 -10.46 3.58 -52.25 -0.19 -10.65 16 5 C 0.67 12.77 7.79 -86.92 -0.68 12.09 16 6 O -0.46 -10.65 8.52 5.30 0.05 -10.61 16 7 N -0.68 -12.94 5.39 -15.78 -0.09 -13.03 16 8 C 0.39 9.31 7.41 -154.99 -1.15 8.16 16 9 C -0.36 -8.03 9.96 -38.89 -0.39 -8.41 16 10 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 11 C -0.31 -7.74 9.83 -38.66 -0.38 -8.12 16 12 C 0.27 7.59 6.55 -85.00 -0.56 7.03 16 13 C -0.43 -11.63 9.14 -37.74 -0.34 -11.98 16 14 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 15 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 16 N -0.65 -17.41 9.10 55.55 0.51 -16.90 16 17 Si 0.89 19.17 29.56 -169.99 -5.02 14.14 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 N -0.47 -12.87 5.74 -10.26 -0.06 -12.93 16 22 C -0.16 -1.60 4.58 -26.49 -0.12 -1.73 16 23 C 0.06 0.62 6.67 37.31 0.25 0.87 16 24 O -0.39 -4.98 10.77 -35.23 -0.38 -5.35 16 25 C 0.07 0.88 6.68 37.21 0.25 1.13 16 26 C -0.17 -2.39 4.82 -26.59 -0.13 -2.52 16 27 H 0.05 0.85 7.62 -51.93 -0.40 0.45 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.51 6.29 -51.93 -0.33 0.18 16 30 H 0.10 2.01 6.09 -51.93 -0.32 1.69 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.38 4.26 7.42 -40.82 -0.30 3.95 16 33 H 0.39 5.86 8.72 -40.82 -0.36 5.51 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 38 H 0.08 0.71 6.53 -51.93 -0.34 0.37 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.44 7.01 -51.93 -0.36 0.08 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.72 7.75 -51.93 -0.40 0.31 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 1.88 6.26 -51.93 -0.32 1.56 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -31.21 350.44 -9.94 -41.15 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.48 Total: 13.19 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.56 Total: -4.30 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.17 Total: -53.51 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.33 Total: -15.96 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.21 -9.94 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.469 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds