Wall clock time and date at job start Tue Mar 31 2020 12:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47073 * 2 1 4 4 N 1.46500 * 109.54618 * 300.91598 * 3 2 1 5 5 C 1.34777 * 120.00311 * 304.18280 * 4 3 2 6 6 O 1.21580 * 119.99566 * 354.54516 * 5 4 3 7 7 N 1.34770 * 120.00090 * 174.81783 * 5 4 3 8 8 C 1.39245 * 119.99787 * 185.27388 * 7 5 4 9 9 C 1.39694 * 119.57550 * 185.71004 * 8 7 5 10 10 C 1.38646 * 119.49594 * 179.72813 * 9 8 7 11 11 C 1.38361 * 118.66749 * 0.52601 * 10 9 8 12 12 C 1.40568 * 119.13193 * 359.73651 * 11 10 9 13 13 C 1.41338 * 119.78606 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99729 * 359.97438 * 13 12 11 15 15 C 1.40018 * 120.00089 * 179.97438 * 13 12 11 16 16 N 1.30747 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00100 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46923 * 60.00561 * 17 15 13 19 19 H 1.48502 * 109.46948 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47198 * 300.00369 * 17 15 13 21 21 N 1.31910 * 119.58062 * 5.97119 * 8 7 5 22 22 C 1.53175 * 109.54387 * 61.09834 * 3 2 1 23 23 C 1.53286 * 109.06622 * 176.85131 * 22 3 2 24 24 O 1.42900 * 109.45730 * 302.44415 * 23 22 3 25 25 C 1.42904 * 114.10222 * 61.15842 * 24 23 22 26 26 C 1.53095 * 109.41199 * 298.84116 * 25 24 23 27 27 H 1.08998 * 109.47086 * 64.77460 * 1 2 3 28 28 H 1.09003 * 109.46893 * 184.77023 * 1 2 3 29 29 H 1.09001 * 109.46848 * 304.77100 * 1 2 3 30 30 H 1.09006 * 109.46893 * 240.00209 * 2 1 3 31 31 H 1.08996 * 109.47347 * 120.00464 * 2 1 3 32 32 H 0.96996 * 119.99967 * 124.17762 * 4 3 2 33 33 H 0.97000 * 120.00093 * 5.27093 * 7 5 4 34 34 H 1.07992 * 120.24966 * 359.96946 * 9 8 7 35 35 H 1.07998 * 120.66695 * 180.24353 * 10 9 8 36 36 H 1.08000 * 120.42936 * 179.75587 * 11 10 9 37 37 H 0.97001 * 119.99571 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.52127 * 296.84071 * 22 3 2 39 39 H 1.08999 * 109.52631 * 57.02473 * 22 3 2 40 40 H 1.08999 * 109.45594 * 182.44604 * 23 22 3 41 41 H 1.09006 * 109.46295 * 62.44516 * 23 22 3 42 42 H 1.08998 * 109.48364 * 178.85982 * 25 24 23 43 43 H 1.08999 * 109.48994 * 58.82785 * 25 24 23 44 44 H 1.08995 * 109.52357 * 297.70305 * 26 25 24 45 45 H 1.09001 * 109.57054 * 177.54304 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5346 2.1410 -1.1844 5 6 1.7709 1.6412 -2.4136 6 8 2.4859 0.6669 -2.5465 7 7 1.2189 2.2246 -3.4958 8 6 1.3721 1.6458 -4.7530 9 6 0.9006 2.3176 -5.8834 10 6 1.0591 1.7424 -7.1349 11 6 1.6744 0.5063 -7.2242 12 6 2.1223 -0.1216 -6.0490 13 6 2.7531 -1.3842 -6.1243 14 1 2.8893 -1.8635 -7.0824 15 6 3.2015 -2.0135 -4.9566 16 7 3.0361 -1.4334 -3.7966 17 14 4.0346 -3.6825 -5.0559 18 1 5.2535 -3.5779 -5.8977 19 1 4.4119 -4.1294 -3.6910 20 1 3.1002 -4.6671 -5.6580 21 7 1.9560 0.4679 -4.8607 22 6 1.5530 2.1581 1.2637 23 6 2.1345 3.5762 1.2916 24 8 3.5609 3.5069 1.2409 25 6 4.0734 2.8888 0.0588 26 6 3.5717 1.4444 -0.0186 27 1 -0.3633 0.4380 -0.9296 28 1 -0.3633 -1.0241 0.0855 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.0299 2.9632 -1.0840 33 1 0.7148 3.0477 -3.3990 34 1 0.4198 3.2794 -5.7836 35 1 0.7053 2.2469 -8.0218 36 1 1.8090 0.0304 -8.1843 37 1 3.3464 -1.8696 -2.9876 38 1 0.4642 2.2086 1.2570 39 1 1.8877 1.6102 2.1446 40 1 1.8272 4.0765 2.2100 41 1 1.7669 4.1364 0.4318 42 1 5.1630 2.8939 0.0890 43 1 3.7314 3.4398 -0.8173 44 1 3.9471 0.8821 0.8363 45 1 3.9254 0.9840 -0.9412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:51 Heat of formation + Delta-G solvation = -36.281739 kcal Electronic energy + Delta-G solvation = -28612.435940 eV Core-core repulsion = 24823.091103 eV Total energy + Delta-G solvation = -3789.344836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75428 -40.37351 -39.08860 -36.95195 -35.69997 -34.77447 -33.17718 -32.15951 -32.12466 -31.50501 -30.45999 -27.41869 -26.23432 -24.66051 -24.00179 -23.12620 -22.57512 -21.66128 -20.20778 -19.59954 -18.85161 -17.85246 -17.22217 -16.93046 -16.59011 -16.30013 -16.24369 -16.02669 -15.64165 -15.41851 -15.13941 -14.83769 -14.62336 -14.46001 -13.97299 -13.89871 -13.69349 -13.35140 -13.20538 -12.89817 -12.76485 -12.71750 -12.54692 -12.34612 -12.29270 -12.19712 -11.97482 -11.77269 -11.50414 -11.39337 -11.19603 -10.82792 -10.57595 -10.37274 -9.84630 -9.65553 -9.05992 -8.71493 -7.99882 -6.37264 1.00861 1.31786 1.39648 1.49847 1.54105 1.87597 2.27604 2.67119 2.97408 3.08319 3.38845 3.68837 3.85946 3.90803 4.07534 4.12150 4.27770 4.37181 4.38742 4.47672 4.53655 4.63350 4.67411 4.76615 4.83164 4.88134 4.93922 4.97007 4.99212 5.07718 5.09502 5.15413 5.17819 5.27525 5.30315 5.35670 5.54883 5.70662 5.88061 5.93693 5.96455 6.09115 6.27466 6.36612 6.46654 6.85978 7.11624 7.35490 8.13514 8.42524 8.60567 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.004970 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.170137 B = 5632.315745 C = 6766.307868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.208 3.792 4 N -0.729 5.729 5 C 0.662 3.338 6 O -0.499 6.499 7 N -0.666 5.666 8 C 0.369 3.631 9 C -0.349 4.349 10 C -0.034 4.034 11 C -0.334 4.334 12 C 0.239 3.761 13 C -0.467 4.467 14 H 0.081 0.919 15 C 0.014 3.986 16 N -0.676 5.676 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.262 1.262 21 N -0.500 5.500 22 C -0.147 4.147 23 C 0.056 3.944 24 O -0.396 6.396 25 C 0.075 3.925 26 C -0.162 4.162 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.399 0.601 33 H 0.414 0.586 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.268 0.732 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.498 9.035 12.993 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.174 4.174 3 C 0.121 3.879 4 N -0.389 5.389 5 C 0.361 3.639 6 O -0.366 6.366 7 N -0.317 5.317 8 C 0.128 3.872 9 C -0.375 4.375 10 C -0.058 4.058 11 C -0.357 4.357 12 C 0.114 3.886 13 C -0.498 4.498 14 H 0.100 0.900 15 C -0.212 4.212 16 N -0.295 5.295 17 Si 0.789 3.211 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.186 1.186 21 N -0.219 5.219 22 C -0.185 4.185 23 C -0.021 4.021 24 O -0.315 6.315 25 C -0.002 4.002 26 C -0.201 4.201 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.250 0.750 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.136 0.864 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.374 7.701 14.077 16.396 hybrid contribution -0.458 0.094 -1.436 1.510 sum -3.832 7.796 12.641 15.338 Atomic orbital electron populations 1.21611 0.95015 1.01107 1.01308 1.21881 0.96796 0.96492 1.02248 1.20027 0.91950 0.91783 0.84106 1.45149 1.61338 1.29292 1.03165 1.16597 0.82347 0.84056 0.80908 1.91287 1.36834 1.24969 1.83545 1.42494 1.56620 1.28258 1.04292 1.18815 0.92873 0.91058 0.84411 1.20910 1.19944 1.04608 0.92027 1.20991 0.94305 0.93624 0.96901 1.21782 1.15283 1.00401 0.98229 1.18826 0.89776 0.93156 0.86873 1.19811 1.33520 1.01710 0.94740 0.90047 1.26914 0.96877 1.02343 0.95080 1.70518 1.27001 1.34068 0.97874 0.85498 0.79212 0.78260 0.78134 1.18805 1.19935 1.18644 1.68632 1.19851 1.07928 1.25516 1.22523 1.02812 0.97058 0.96071 1.22831 0.80080 0.95689 1.03478 1.87891 1.22085 1.80085 1.41426 1.22365 0.98868 0.91771 0.87184 1.22518 0.96710 0.98047 1.02806 0.94994 0.93847 0.90134 0.92947 0.90931 0.76547 0.74999 0.85365 0.84824 0.88118 0.92155 0.87951 0.88890 0.86366 0.92576 0.89132 0.94085 0.90566 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.47 71.98 0.68 -2.80 16 2 C -0.14 -4.02 4.70 30.59 0.14 -3.88 16 3 C 0.21 5.28 0.35 3.72 0.00 5.28 16 4 N -0.73 -19.60 3.58 -437.48 -1.56 -21.16 16 5 C 0.66 25.70 7.79 179.06 1.40 27.09 16 6 O -0.50 -24.43 8.52 -3.97 -0.03 -24.47 16 7 N -0.67 -25.25 5.39 -322.12 -1.74 -26.99 16 8 C 0.37 17.75 7.41 133.26 0.99 18.74 16 9 C -0.35 -14.98 9.96 22.72 0.23 -14.75 16 10 C -0.03 -1.50 10.15 22.40 0.23 -1.27 16 11 C -0.33 -17.10 9.83 22.87 0.22 -16.88 16 12 C 0.24 13.89 6.55 40.19 0.26 14.16 16 13 C -0.47 -26.82 9.14 23.46 0.21 -26.61 16 14 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 15 C 0.01 0.77 5.50 85.29 0.47 1.24 16 16 N -0.68 -38.44 9.10 21.84 0.20 -38.25 16 17 Si 0.97 41.17 29.56 68.60 2.03 43.19 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 21 N -0.50 -28.48 5.74 -186.36 -1.07 -29.55 16 22 C -0.15 -2.46 4.58 30.75 0.14 -2.31 16 23 C 0.06 0.90 6.67 72.08 0.48 1.38 16 24 O -0.40 -9.19 10.77 -148.98 -1.60 -10.80 16 25 C 0.07 1.95 6.68 72.01 0.48 2.43 16 26 C -0.16 -4.72 4.82 30.69 0.15 -4.57 16 27 H 0.03 0.96 7.62 -2.39 -0.02 0.95 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.52 6.29 -2.39 -0.02 1.50 16 30 H 0.05 2.15 6.09 -2.38 -0.01 2.14 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.40 7.91 7.42 -92.71 -0.69 7.22 16 33 H 0.41 11.54 8.72 -92.71 -0.81 10.73 16 34 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 37 H 0.27 14.48 8.29 -92.71 -0.77 13.72 16 38 H 0.10 1.32 6.53 -2.39 -0.02 1.30 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 0.82 7.01 -2.38 -0.02 0.81 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.13 7.75 -2.39 -0.02 1.11 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 2.36 6.26 -2.39 -0.01 2.34 16 Total: -1.00 -73.21 350.44 1.84 -71.38 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.47 Total: 39.39 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 6.09 Total: -2.75 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.17 Total: -115.95 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.64 Total: -35.26 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -73.21 1.84 -71.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.096 kcal (2) G-P(sol) polarization free energy of solvation -73.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds