Wall clock time and date at job start Tue Mar 31 2020 12:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46914 * 2 1 4 4 O 1.33493 * 126.82936 * 270.03717 * 3 2 1 5 5 N 1.20658 * 113.15376 * 179.71177 * 4 3 2 6 6 C 1.30013 * 112.30531 * 0.43238 * 5 4 3 7 7 C 1.37363 * 126.82693 * 89.99846 * 3 2 1 8 8 C 1.47393 * 128.56797 * 0.03266 * 7 3 2 9 9 O 1.21611 * 120.00231 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00287 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00135 * 180.02562 * 10 8 7 12 12 C 1.53587 * 112.24458 * 298.98403 * 11 10 8 13 13 C 1.54215 * 106.67974 * 238.83080 * 12 11 10 14 14 C 1.54762 * 104.15817 * 335.05779 * 13 12 11 15 15 C 1.54778 * 103.21093 * 37.81053 * 14 13 12 16 16 H 1.08992 * 111.42196 * 84.68962 * 15 14 13 17 17 N 1.46980 * 109.16012 * 209.59495 * 15 14 13 18 18 C 1.36939 * 125.58357 * 294.37774 * 17 15 14 19 19 H 1.08002 * 119.99515 * 359.97438 * 18 17 15 20 20 C 1.38803 * 120.00228 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00199 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47437 * 89.99839 * 22 20 18 24 24 H 1.48502 * 109.47315 * 209.99715 * 22 20 18 25 25 H 1.48507 * 109.47081 * 329.99717 * 22 20 18 26 26 C 1.47374 * 108.84019 * 114.35763 * 17 15 14 27 27 C 1.54912 * 112.33421 * 62.35809 * 11 10 8 28 28 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47652 * 300.00132 * 1 2 3 30 30 H 1.09002 * 109.46595 * 60.00595 * 1 2 3 31 31 H 1.08995 * 109.47652 * 239.99867 * 2 1 3 32 32 H 1.09002 * 109.46595 * 119.99405 * 2 1 3 33 33 H 1.08002 * 127.33964 * 179.86433 * 6 5 4 34 34 H 0.97000 * 119.99814 * 0.02562 * 10 8 7 35 35 H 1.09002 * 110.01095 * 358.13821 * 12 11 10 36 36 H 1.08999 * 110.01731 * 119.47969 * 12 11 10 37 37 H 1.09005 * 110.49135 * 93.72508 * 13 12 11 38 38 H 1.09000 * 110.49521 * 216.38512 * 13 12 11 39 39 H 1.09000 * 110.67069 * 156.24054 * 14 13 12 40 40 H 1.08997 * 110.66692 * 279.21330 * 14 13 12 41 41 H 0.96996 * 120.00026 * 180.02562 * 21 20 18 42 42 H 1.08997 * 110.37163 * 94.14084 * 26 17 15 43 43 H 1.09001 * 110.37260 * 216.36158 * 26 17 15 44 44 H 1.09005 * 110.96834 * 204.33205 * 27 11 10 45 45 H 1.08997 * 110.96719 * 328.09308 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2984 2.1755 -1.0685 5 7 2.6840 3.2826 -0.7833 6 6 2.7540 3.4648 0.5021 7 6 2.3067 2.1971 1.0995 8 6 2.1834 1.8465 2.5258 9 8 1.7937 0.7407 2.8487 10 7 2.5026 2.7513 3.4723 11 6 2.3806 2.4026 4.8899 12 6 0.9377 2.0486 5.2795 13 6 0.5247 3.0346 6.3909 14 6 1.8654 3.4624 7.0349 15 6 2.8245 3.5591 5.8240 16 1 2.7499 4.5297 5.3336 17 7 4.1927 3.2553 6.2668 18 6 4.9350 4.0098 7.1357 19 1 4.5200 4.9139 7.5561 20 6 6.2211 3.6131 7.4752 21 7 6.7271 2.5115 6.9624 22 14 7.2334 4.6419 8.6611 23 1 6.9905 4.1780 10.0507 24 1 8.6751 4.4972 8.3358 25 1 6.8393 6.0686 8.5395 26 6 4.6348 2.0056 5.6229 27 6 3.3151 1.2341 5.2913 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0689 4.3582 1.0209 34 1 2.8131 3.6335 3.2148 35 1 0.2803 2.1613 4.4174 36 1 0.8922 1.0252 5.6518 37 1 0.0135 3.8979 5.9646 38 1 -0.1101 2.5382 7.1250 39 1 1.7652 4.4309 7.5247 40 1 2.2100 2.7085 7.7427 41 1 7.6256 2.2341 7.1999 42 1 5.1860 2.2243 4.7084 43 1 5.2525 1.4240 6.3073 44 1 2.9340 0.7142 6.1703 45 1 3.4536 0.5425 4.4603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992274708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:57 Heat of formation + Delta-G solvation = 47.174922 kcal Electronic energy + Delta-G solvation = -28032.852849 eV Core-core repulsion = 24247.126965 eV Total energy + Delta-G solvation = -3785.725884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.00415 -40.17416 -38.13072 -34.85026 -34.26125 -33.94652 -33.20437 -31.43140 -30.49049 -29.66715 -26.76757 -26.34151 -24.65857 -24.13909 -23.88088 -21.96814 -20.85963 -20.03822 -19.62607 -18.78229 -17.90273 -17.71125 -17.04927 -16.50948 -15.71512 -15.00652 -14.96228 -14.68004 -14.63330 -14.08146 -13.95905 -13.64853 -13.52841 -13.13577 -12.83483 -12.74857 -12.23274 -12.05738 -11.86706 -11.70991 -11.68442 -11.20545 -11.07511 -10.99831 -10.87892 -10.70455 -10.56552 -10.49869 -10.21221 -10.11347 -10.00299 -9.81868 -9.67744 -9.55901 -9.46922 -8.68690 -8.59548 -6.89017 -5.67595 -3.11218 1.01518 1.71154 2.69179 3.30146 3.36105 3.37627 3.42727 3.44444 4.14669 4.20541 4.44578 4.53035 4.78987 4.88840 4.99194 5.09507 5.12784 5.22752 5.30093 5.48761 5.50504 5.60956 5.64235 5.68900 5.79636 5.82831 5.87982 5.95387 5.99584 6.05060 6.11454 6.21460 6.32404 6.37850 6.50718 6.55419 6.73455 6.74691 6.94904 7.07200 7.51133 7.61344 7.70917 7.85008 8.05673 8.33649 8.37767 9.18423 9.79279 10.43033 11.34784 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.003762 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.187275 B = 7440.983127 C = 8163.464784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.047 3.953 4 O 0.089 5.911 5 N -0.357 5.357 6 C 0.023 3.977 7 C -0.257 4.257 8 C 0.597 3.403 9 O -0.530 6.530 10 N -0.694 5.694 11 C 0.162 3.838 12 C -0.110 4.110 13 C -0.125 4.125 14 C -0.130 4.130 15 C 0.163 3.837 16 H 0.045 0.955 17 N -0.594 5.594 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.153 3.847 27 C -0.143 4.143 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.200 0.800 34 H 0.399 0.601 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.252 0.748 42 H 0.009 0.991 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -2.557 -11.513 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.018 4.018 4 O 0.030 5.970 5 N -0.063 5.063 6 C -0.160 4.160 7 C -0.264 4.264 8 C 0.383 3.617 9 O -0.408 6.408 10 N -0.343 5.343 11 C 0.076 3.924 12 C -0.149 4.149 13 C -0.163 4.163 14 C -0.170 4.170 15 C 0.055 3.945 16 H 0.062 0.938 17 N -0.318 5.318 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.028 3.972 27 C -0.182 4.182 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.217 0.783 34 H 0.233 0.767 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.126 0.874 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.397 -2.590 -12.255 17.624 hybrid contribution 0.790 1.010 1.182 1.744 sum -11.608 -1.580 -11.073 16.120 Atomic orbital electron populations 1.21699 0.92972 1.02946 1.02522 1.20383 0.97111 0.85515 1.05625 1.24891 0.95583 0.96139 0.85140 1.84558 1.61549 1.17487 1.33450 1.73642 1.16571 0.98498 1.17585 1.26425 1.00543 0.99434 0.89550 1.22236 1.13240 0.95182 0.95739 1.16707 0.77654 0.84627 0.82718 1.90763 1.46958 1.21093 1.82023 1.45702 1.66614 1.16196 1.05829 1.21700 0.95164 0.97250 0.78318 1.22278 0.94838 0.99694 0.98133 1.22364 0.97964 0.98443 0.97529 1.22944 0.93969 1.01251 0.98853 1.21758 0.87085 0.93808 0.91898 0.93754 1.44480 1.10368 1.25529 1.51437 1.19032 0.94882 1.03594 1.17468 0.90487 1.24778 0.97221 0.97999 1.00479 1.69798 1.16197 1.23768 1.47052 0.86102 0.79552 0.79311 0.80681 1.21585 1.21721 1.20779 1.22252 0.91486 0.86854 0.96565 1.23599 0.98207 0.96143 1.00289 0.91030 0.91726 0.92526 0.89360 0.86587 0.78286 0.76704 0.92321 0.91049 0.92372 0.92190 0.92337 0.90706 0.93723 0.97293 0.87419 0.91275 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.45 6.05 -27.88 -0.17 -0.62 16 3 C 0.05 0.55 6.80 -34.63 -0.24 0.32 16 4 O 0.09 1.09 11.06 18.65 0.21 1.30 16 5 N -0.36 -4.66 12.01 31.81 0.38 -4.28 16 6 C 0.02 0.28 11.95 -14.72 -0.18 0.10 16 7 C -0.26 -3.38 6.47 -102.89 -0.67 -4.04 16 8 C 0.60 9.04 6.98 -12.54 -0.09 8.95 16 9 O -0.53 -8.94 13.05 5.27 0.07 -8.88 16 10 N -0.69 -10.60 5.23 -46.42 -0.24 -10.84 16 11 C 0.16 2.78 0.73 -129.37 -0.09 2.68 16 12 C -0.11 -1.71 5.27 -25.79 -0.14 -1.84 16 13 C -0.12 -1.79 6.84 -25.17 -0.17 -1.96 16 14 C -0.13 -2.27 6.25 -24.87 -0.16 -2.42 16 15 C 0.16 3.13 3.63 -65.60 -0.24 2.89 16 16 H 0.04 0.84 7.98 -51.93 -0.41 0.42 16 17 N -0.59 -14.23 3.06 -160.13 -0.49 -14.72 16 18 C -0.22 -5.85 10.02 -15.06 -0.15 -6.01 16 19 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -26.22 10.07 55.49 0.56 -25.66 16 22 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.15 3.65 5.95 -1.72 -0.01 3.64 16 27 C -0.14 -2.82 5.85 -23.88 -0.14 -2.96 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.12 1.26 6.78 -51.93 -0.35 0.91 16 33 H 0.20 1.84 7.88 -52.49 -0.41 1.42 16 34 H 0.40 5.43 7.86 -40.82 -0.32 5.11 16 35 H 0.06 0.89 7.49 -51.93 -0.39 0.50 16 36 H 0.07 1.14 7.37 -51.93 -0.38 0.75 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.11 2.93 5.82 -51.93 -0.30 2.63 16 44 H 0.07 1.36 7.63 -51.93 -0.40 0.96 16 45 H 0.07 1.37 6.65 -51.93 -0.35 1.02 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -30.15 358.36 -7.96 -38.12 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.66 Total: 5.46 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.16 Total: -2.45 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.21 Total: -55.50 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.28 Total: -7.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.15 -7.96 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992274708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.291 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds