Wall clock time and date at job start Tue Mar 31 2020 12:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46914 * 2 1 4 4 O 1.33493 * 126.82936 * 270.03717 * 3 2 1 5 5 N 1.20658 * 113.15376 * 179.71177 * 4 3 2 6 6 C 1.30013 * 112.30531 * 0.43238 * 5 4 3 7 7 C 1.37363 * 126.82693 * 89.99846 * 3 2 1 8 8 C 1.47393 * 128.56797 * 0.03266 * 7 3 2 9 9 O 1.21611 * 120.00231 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00287 * 180.02562 * 8 7 3 11 11 C 1.46498 * 120.00135 * 180.02562 * 10 8 7 12 12 C 1.53587 * 112.24458 * 298.98403 * 11 10 8 13 13 C 1.54215 * 106.67974 * 238.83080 * 12 11 10 14 14 C 1.54762 * 104.15817 * 335.05779 * 13 12 11 15 15 C 1.54778 * 103.21093 * 37.81053 * 14 13 12 16 16 H 1.08992 * 111.42196 * 84.68962 * 15 14 13 17 17 N 1.46980 * 109.16012 * 209.59495 * 15 14 13 18 18 C 1.36939 * 125.58357 * 294.37774 * 17 15 14 19 19 H 1.08002 * 119.99515 * 359.97438 * 18 17 15 20 20 C 1.38803 * 120.00228 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00199 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47437 * 89.99839 * 22 20 18 24 24 H 1.48502 * 109.47315 * 209.99715 * 22 20 18 25 25 H 1.48507 * 109.47081 * 329.99717 * 22 20 18 26 26 C 1.47374 * 108.84019 * 114.35763 * 17 15 14 27 27 C 1.54912 * 112.33421 * 62.35809 * 11 10 8 28 28 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47652 * 300.00132 * 1 2 3 30 30 H 1.09002 * 109.46595 * 60.00595 * 1 2 3 31 31 H 1.08995 * 109.47652 * 239.99867 * 2 1 3 32 32 H 1.09002 * 109.46595 * 119.99405 * 2 1 3 33 33 H 1.08002 * 127.33964 * 179.86433 * 6 5 4 34 34 H 0.97000 * 119.99814 * 0.02562 * 10 8 7 35 35 H 1.09002 * 110.01095 * 358.13821 * 12 11 10 36 36 H 1.08999 * 110.01731 * 119.47969 * 12 11 10 37 37 H 1.09005 * 110.49135 * 93.72508 * 13 12 11 38 38 H 1.09000 * 110.49521 * 216.38512 * 13 12 11 39 39 H 1.09000 * 110.67069 * 156.24054 * 14 13 12 40 40 H 1.08997 * 110.66692 * 279.21330 * 14 13 12 41 41 H 0.96996 * 120.00026 * 180.02562 * 21 20 18 42 42 H 1.08997 * 110.37163 * 94.14084 * 26 17 15 43 43 H 1.09001 * 110.37260 * 216.36158 * 26 17 15 44 44 H 1.09005 * 110.96834 * 204.33205 * 27 11 10 45 45 H 1.08997 * 110.96719 * 328.09308 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2984 2.1755 -1.0685 5 7 2.6840 3.2826 -0.7833 6 6 2.7540 3.4648 0.5021 7 6 2.3067 2.1971 1.0995 8 6 2.1834 1.8465 2.5258 9 8 1.7937 0.7407 2.8487 10 7 2.5026 2.7513 3.4723 11 6 2.3806 2.4026 4.8899 12 6 0.9377 2.0486 5.2795 13 6 0.5247 3.0346 6.3909 14 6 1.8654 3.4624 7.0349 15 6 2.8245 3.5591 5.8240 16 1 2.7499 4.5297 5.3336 17 7 4.1927 3.2553 6.2668 18 6 4.9350 4.0098 7.1357 19 1 4.5200 4.9139 7.5561 20 6 6.2211 3.6131 7.4752 21 7 6.7271 2.5115 6.9624 22 14 7.2334 4.6419 8.6611 23 1 6.9905 4.1780 10.0507 24 1 8.6751 4.4972 8.3358 25 1 6.8393 6.0686 8.5395 26 6 4.6348 2.0056 5.6229 27 6 3.3151 1.2341 5.2913 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0689 4.3582 1.0209 34 1 2.8131 3.6335 3.2148 35 1 0.2803 2.1613 4.4174 36 1 0.8922 1.0252 5.6518 37 1 0.0135 3.8979 5.9646 38 1 -0.1101 2.5382 7.1250 39 1 1.7652 4.4309 7.5247 40 1 2.2100 2.7085 7.7427 41 1 7.6256 2.2341 7.1999 42 1 5.1860 2.2243 4.7084 43 1 5.2525 1.4240 6.3073 44 1 2.9340 0.7142 6.1703 45 1 3.4536 0.5425 4.4603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992274708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:56 Heat of formation + Delta-G solvation = 29.430699 kcal Electronic energy + Delta-G solvation = -28033.622296 eV Core-core repulsion = 24247.126965 eV Total energy + Delta-G solvation = -3786.495331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.96909 -41.55297 -39.49847 -36.08488 -35.60903 -35.06641 -34.36018 -33.26185 -31.65991 -31.05337 -28.41334 -27.76136 -25.82016 -25.67461 -24.94444 -23.10120 -22.20247 -21.55224 -20.90921 -20.16729 -18.99908 -18.84798 -18.72957 -17.64146 -17.03725 -16.83507 -16.09972 -16.07604 -15.62129 -15.51353 -15.08854 -15.03055 -14.61929 -14.46400 -14.41354 -13.89193 -13.54572 -13.48877 -13.18430 -12.92899 -12.89300 -12.73154 -12.65502 -12.45701 -12.27911 -12.02836 -11.89633 -11.85476 -11.69350 -11.58770 -11.47952 -11.45195 -11.22410 -10.92095 -10.71586 -10.52449 -9.94333 -8.85545 -7.73069 -5.17918 0.02719 0.74385 1.48604 1.49509 1.57816 1.71643 2.14760 2.21212 2.51595 3.18647 3.28816 3.36300 3.41822 3.58830 3.65694 3.94566 3.97709 3.99826 4.19352 4.29340 4.37475 4.39544 4.43416 4.49226 4.60687 4.67093 4.72949 4.82240 4.83859 4.89369 4.98292 5.01291 5.11001 5.14744 5.18955 5.24291 5.33087 5.34251 5.48597 5.53609 5.66093 5.68066 5.85227 6.32498 6.51533 7.10277 7.13061 7.18128 7.81545 8.45130 9.27975 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.003762 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.187275 B = 7440.983127 C = 8163.464784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.060 3.940 4 O 0.088 5.912 5 N -0.375 5.375 6 C 0.031 3.969 7 C -0.281 4.281 8 C 0.600 3.400 9 O -0.550 6.550 10 N -0.694 5.694 11 C 0.172 3.828 12 C -0.104 4.104 13 C -0.110 4.110 14 C -0.126 4.126 15 C 0.154 3.846 16 H 0.057 0.943 17 N -0.610 5.610 18 C -0.224 4.224 19 H 0.085 0.915 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.975 3.025 23 H -0.288 1.288 24 H -0.300 1.300 25 H -0.268 1.268 26 C 0.162 3.838 27 C -0.129 4.129 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.223 0.777 34 H 0.407 0.593 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.244 0.756 42 H -0.019 1.019 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 -1.669 -12.212 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.005 4.005 4 O 0.031 5.969 5 N -0.082 5.082 6 C -0.152 4.152 7 C -0.288 4.288 8 C 0.387 3.613 9 O -0.429 6.429 10 N -0.344 5.344 11 C 0.086 3.914 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.074 0.926 17 N -0.334 5.334 18 C -0.353 4.353 19 H 0.103 0.897 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.227 1.227 25 H -0.193 1.193 26 C 0.037 3.963 27 C -0.169 4.169 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.240 0.760 34 H 0.243 0.757 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.054 0.946 42 H -0.001 1.001 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.532 -1.681 -12.976 19.555 hybrid contribution 1.430 0.708 1.350 2.090 sum -13.102 -0.973 -11.626 17.543 Atomic orbital electron populations 1.21676 0.91893 1.04014 1.02047 1.20525 0.97884 0.84105 1.06219 1.25342 0.93740 0.96702 0.84673 1.84556 1.61549 1.17408 1.33411 1.73636 1.17543 0.98969 1.18039 1.26799 0.99386 0.99739 0.89233 1.22097 1.15395 0.96398 0.94934 1.16873 0.76918 0.84148 0.83360 1.90751 1.47864 1.21822 1.82501 1.45623 1.66899 1.16792 1.05059 1.21499 0.95723 0.94990 0.79209 1.22210 0.93313 0.99828 0.98904 1.22306 0.96393 0.98965 0.97156 1.22808 0.95189 1.00987 0.97610 1.22022 0.85039 0.94925 0.93299 0.92578 1.44658 1.12169 1.25373 1.51192 1.19403 0.95090 1.03689 1.17092 0.89691 1.25557 0.98609 0.99273 1.02549 1.70059 1.15952 1.25436 1.48675 0.85121 0.77405 0.78540 0.78530 1.21512 1.22650 1.19328 1.21906 0.92851 0.87238 0.94321 1.23394 0.96732 0.96630 1.00131 0.89247 0.93637 0.91475 0.86635 0.88060 0.76023 0.75728 0.91386 0.91540 0.90135 0.90285 0.91634 0.93168 0.94644 1.00069 0.91119 0.91383 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 71.98 0.71 -1.33 16 2 C -0.05 -0.85 6.05 29.85 0.18 -0.66 16 3 C 0.06 1.33 6.80 25.48 0.17 1.51 16 4 O 0.09 2.03 11.06 76.99 0.85 2.88 16 5 N -0.37 -9.23 12.01 -54.18 -0.65 -9.88 16 6 C 0.03 0.70 11.95 87.29 1.04 1.74 16 7 C -0.28 -7.07 6.47 -18.74 -0.12 -7.19 16 8 C 0.60 17.60 6.98 86.65 0.60 18.20 16 9 O -0.55 -18.15 13.05 -4.07 -0.05 -18.20 16 10 N -0.69 -20.41 5.23 -419.03 -2.19 -22.60 16 11 C 0.17 5.76 0.73 5.19 0.00 5.76 16 12 C -0.10 -2.97 5.27 31.20 0.16 -2.80 16 13 C -0.11 -2.80 6.84 31.61 0.22 -2.58 16 14 C -0.13 -4.17 6.25 31.80 0.20 -3.97 16 15 C 0.15 5.75 3.63 46.24 0.17 5.92 16 16 H 0.06 2.00 7.98 -2.39 -0.02 1.98 16 17 N -0.61 -29.55 3.06 -660.55 -2.02 -31.57 16 18 C -0.22 -11.90 10.02 84.03 0.84 -11.06 16 19 H 0.09 4.29 7.83 -2.91 -0.02 4.26 16 20 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 21 N -0.95 -56.30 10.07 21.65 0.22 -56.08 16 22 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.16 8.03 5.95 87.41 0.52 8.55 16 27 C -0.13 -5.18 5.85 32.44 0.19 -4.99 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 2.11 6.78 -2.39 -0.02 2.09 16 33 H 0.22 3.66 7.88 -2.91 -0.02 3.64 16 34 H 0.41 10.53 7.86 -92.71 -0.73 9.80 16 35 H 0.07 1.86 7.49 -2.39 -0.02 1.84 16 36 H 0.07 1.99 7.37 -2.39 -0.02 1.97 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 41 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.07 4.06 5.82 -2.39 -0.01 4.05 16 44 H 0.07 2.72 7.63 -2.38 -0.02 2.70 16 45 H 0.07 2.66 6.65 -2.39 -0.02 2.65 16 Total: -1.00 -66.53 358.36 3.83 -62.70 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.28 Total: 22.02 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.36 Total: 3.81 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.64 Total: -120.13 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.80 Total: -15.33 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.53 3.83 -62.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992274708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.129 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds