Wall clock time and date at job start Tue Mar 31 2020 12:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.29940 * 125.37204 * 89.99994 * 3 2 1 5 5 C 1.36066 * 108.47304 * 179.97438 * 4 3 2 6 6 C 1.47420 * 126.44869 * 179.97438 * 5 4 3 7 7 O 1.21617 * 120.00124 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99790 * 0.02562 * 6 5 4 9 9 C 1.48336 * 128.19854 * 359.68307 * 8 6 5 10 10 C 1.54891 * 104.09647 * 138.19166 * 9 8 6 11 11 H 1.09007 * 112.10174 * 263.91270 * 10 9 8 12 12 C 1.54141 * 108.65119 * 138.75505 * 10 9 8 13 13 C 1.54838 * 104.34847 * 224.15600 * 12 10 9 14 14 C 1.56522 * 103.24979 * 37.79442 * 13 12 10 15 15 H 1.08993 * 110.39321 * 80.95302 * 14 13 12 16 16 N 1.46498 * 111.28316 * 204.04093 * 14 13 12 17 17 C 1.36937 * 120.00194 * 269.43613 * 16 14 13 18 18 H 1.08003 * 119.99781 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00279 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99750 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47208 * 89.99786 * 21 19 17 23 23 H 1.48496 * 109.47314 * 209.99674 * 21 19 17 24 24 H 1.48506 * 109.47257 * 330.00247 * 21 19 17 25 25 C 1.54143 * 103.54938 * 322.70775 * 14 13 12 26 26 H 1.09002 * 111.89377 * 259.63161 * 25 14 13 27 27 C 1.48347 * 128.19617 * 179.97438 * 8 6 5 28 28 C 1.36090 * 107.10621 * 0.02562 * 5 4 3 29 29 O 1.34042 * 125.38043 * 269.69984 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 31 31 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 34 34 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 35 35 H 1.08999 * 110.46923 * 256.93003 * 9 8 6 36 36 H 1.08998 * 110.46251 * 19.52156 * 9 8 6 37 37 H 1.09004 * 110.45567 * 342.87431 * 12 10 9 38 38 H 1.08999 * 110.46148 * 105.31364 * 12 10 9 39 39 H 1.09000 * 110.75899 * 156.53593 * 13 12 10 40 40 H 1.08991 * 110.76300 * 279.73040 * 13 12 10 41 41 H 0.96998 * 120.00172 * 89.43671 * 16 14 13 42 42 H 0.97004 * 120.00038 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.46497 * 340.48330 * 27 8 6 44 44 H 1.09007 * 110.46165 * 102.93863 * 27 8 6 45 45 H 1.08001 * 126.52908 * 179.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7177 3.3572 0.6640 6 6 3.1116 4.4724 1.5441 7 8 3.4839 5.5251 1.0621 8 7 3.0591 4.3253 2.8827 9 6 2.6315 3.1357 3.6588 10 6 3.6636 3.0452 4.8101 11 1 4.4728 2.3514 4.5820 12 6 2.9204 2.6834 6.1111 13 6 3.5294 3.6279 7.1763 14 6 3.7389 4.9659 6.3916 15 1 2.8034 5.5220 6.3325 16 7 4.7852 5.7855 7.0078 17 6 4.4581 6.7041 7.9692 18 1 3.4288 6.8240 8.2735 19 6 5.4494 7.4811 8.5527 20 7 6.7037 7.3353 8.1815 21 14 5.0031 8.7347 9.8637 22 1 5.0638 8.0941 11.2022 23 1 5.9624 9.8670 9.8129 24 1 3.6281 9.2393 9.6185 25 6 4.1769 4.4976 4.9898 26 1 5.2564 4.5687 4.8564 27 6 3.4099 5.3168 3.9290 28 6 2.7191 3.3619 -0.6969 29 8 2.2965 2.1506 -1.0929 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6265 3.2803 4.0553 36 1 2.6720 2.2408 3.0377 37 1 1.8517 2.8691 6.0036 38 1 3.1005 1.6414 6.3756 39 1 2.8386 3.7691 8.0076 40 1 4.4856 3.2442 7.5316 41 1 5.7096 5.6775 6.7348 42 1 7.3965 7.8780 8.5895 43 1 4.0483 6.0975 3.5155 44 1 2.5078 5.7517 4.3596 45 1 3.0091 4.1824 -1.3366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026246169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:01 Heat of formation + Delta-G solvation = 2.715967 kcal Electronic energy + Delta-G solvation = -26873.225107 eV Core-core repulsion = 23085.571338 eV Total energy + Delta-G solvation = -3787.653769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.71571 -40.07981 -38.31032 -35.42650 -34.97126 -34.28038 -33.27664 -30.93462 -30.00347 -29.23281 -28.26031 -25.35885 -24.88017 -24.45863 -23.01707 -22.60623 -21.47958 -20.21095 -19.46439 -18.93331 -17.67673 -17.14427 -17.02340 -16.75723 -15.90125 -15.58746 -15.16729 -14.96063 -14.84828 -14.21775 -14.05046 -13.89554 -13.56688 -13.16594 -13.07208 -12.98251 -12.60394 -12.31265 -12.25285 -11.87503 -11.69855 -11.60844 -11.48478 -11.14128 -11.01338 -10.79917 -10.77185 -10.53493 -10.27976 -10.22570 -10.17112 -9.92431 -9.86075 -9.64272 -9.31107 -8.85486 -8.59680 -6.93028 -5.75331 -3.03983 0.87992 1.76047 2.26173 2.90951 3.23772 3.44852 3.50134 3.51851 3.53324 4.36419 4.42867 4.60184 4.63649 4.69076 4.78522 4.84128 4.93667 5.05128 5.26053 5.26868 5.31984 5.46054 5.47230 5.52216 5.53489 5.59914 5.67116 5.71098 5.81920 5.84880 5.99458 6.01483 6.10542 6.15464 6.24895 6.31258 6.43923 6.47405 6.58583 6.74227 6.82864 7.07177 7.19880 7.62179 7.72110 8.11654 8.43313 9.54336 10.12302 10.46252 11.47244 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002745 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.060933 B =10198.392251 C =10960.294058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C 0.195 3.805 4 N -0.455 5.455 5 C -0.060 4.060 6 C 0.616 3.384 7 O -0.542 6.542 8 N -0.605 5.605 9 C 0.097 3.903 10 C -0.101 4.101 11 H 0.083 0.917 12 C -0.113 4.113 13 C -0.145 4.145 14 C 0.186 3.814 15 H 0.058 0.942 16 N -0.718 5.718 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.108 4.108 26 H 0.087 0.913 27 C 0.115 3.885 28 C 0.008 3.992 29 O -0.197 6.197 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.136 -17.618 -17.882 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 C -0.014 4.014 4 N -0.185 5.185 5 C -0.180 4.180 6 C 0.403 3.597 7 O -0.420 6.420 8 N -0.337 5.337 9 C -0.026 4.026 10 C -0.120 4.120 11 H 0.101 0.899 12 C -0.152 4.152 13 C -0.186 4.186 14 C 0.074 3.926 15 H 0.075 0.925 16 N -0.358 5.358 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.128 4.128 26 H 0.105 0.895 27 C -0.007 4.007 28 C -0.065 4.065 29 O -0.083 6.083 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.076 -17.092 -17.530 27.299 hybrid contribution 0.312 1.008 0.061 1.057 sum -11.764 -16.084 -17.469 26.500 Atomic orbital electron populations 1.21795 0.92878 1.03148 1.03110 1.20128 0.97000 0.83904 1.05477 1.26461 0.99398 0.97063 0.78451 1.70781 1.15779 1.02688 1.29263 1.21780 1.09158 0.94138 0.92898 1.16295 0.77991 0.85085 0.80312 1.90840 1.49089 1.27556 1.74520 1.48949 1.63579 1.17303 1.03823 1.23165 0.97165 0.89484 0.92779 1.22800 0.97358 0.97107 0.94775 0.89907 1.22344 0.98964 0.99261 0.94612 1.23498 1.00300 0.97358 0.97440 1.21378 0.92674 0.90297 0.88227 0.92456 1.42428 1.05323 1.42558 1.45481 1.19243 0.93259 1.11851 1.12700 0.91160 1.24744 0.95377 1.00318 1.00474 1.69660 0.99280 1.43412 1.45694 0.86206 0.77253 0.81069 0.81756 1.21766 1.21814 1.20758 1.23079 1.00303 0.93309 0.96158 0.89481 1.22694 0.99698 0.91667 0.86620 1.25269 0.99121 0.86500 0.95657 1.84382 1.63487 1.22494 1.37922 0.91547 0.92153 0.90737 0.87313 0.88728 0.91136 0.87505 0.91809 0.92278 0.92346 0.91727 0.78163 0.93508 0.89861 0.90474 0.75303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.90 37.16 0.37 -0.29 16 2 C -0.03 -0.14 6.56 -27.88 -0.18 -0.32 16 3 C 0.20 1.78 7.56 -13.08 -0.10 1.69 16 4 N -0.45 -5.31 8.40 -7.66 -0.06 -5.38 16 5 C -0.06 -0.79 6.86 -83.02 -0.57 -1.36 16 6 C 0.62 9.89 7.92 -12.52 -0.10 9.79 16 7 O -0.54 -10.14 17.17 5.26 0.09 -10.05 16 8 N -0.61 -9.35 3.31 -169.91 -0.56 -9.91 16 9 C 0.10 1.26 6.28 -2.03 -0.01 1.25 16 10 C -0.10 -1.39 3.97 -87.92 -0.35 -1.74 16 11 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.11 -1.50 6.38 -25.17 -0.16 -1.66 16 13 C -0.14 -2.47 6.65 -23.87 -0.16 -2.63 16 14 C 0.19 3.59 3.15 -65.44 -0.21 3.38 16 15 H 0.06 1.13 7.14 -51.93 -0.37 0.76 16 16 N -0.72 -17.76 5.25 -51.02 -0.27 -18.03 16 17 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 21 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.11 -1.82 3.59 -88.17 -0.32 -2.13 16 26 H 0.09 1.60 7.79 -51.93 -0.40 1.19 16 27 C 0.11 1.91 6.56 -2.27 -0.01 1.90 16 28 C 0.01 0.08 11.95 29.96 0.36 0.44 16 29 O -0.20 -1.87 10.73 6.51 0.07 -1.80 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.87 7.21 -51.93 -0.37 0.50 16 36 H 0.11 1.34 5.40 -51.93 -0.28 1.06 16 37 H 0.06 0.77 7.18 -51.93 -0.37 0.40 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.38 10.18 7.60 -40.82 -0.31 9.87 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.08 1.53 7.88 -51.93 -0.41 1.12 16 44 H 0.08 1.25 7.22 -51.92 -0.37 0.88 16 45 H 0.23 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -33.29 366.47 -7.87 -41.16 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.67 Total: 7.45 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.69 Total: 1.11 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.17 Total: -60.83 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.16 Total: -11.85 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.29 -7.87 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026246169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.874 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds