Wall clock time and date at job start Tue Mar 31 2020 12:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.29940 * 125.37204 * 89.99994 * 3 2 1 5 5 C 1.36066 * 108.47304 * 179.97438 * 4 3 2 6 6 C 1.47420 * 126.44869 * 179.97438 * 5 4 3 7 7 O 1.21617 * 120.00124 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99790 * 0.02562 * 6 5 4 9 9 C 1.48336 * 128.19854 * 359.68307 * 8 6 5 10 10 C 1.54891 * 104.09647 * 138.19166 * 9 8 6 11 11 H 1.09007 * 112.10174 * 263.91270 * 10 9 8 12 12 C 1.54141 * 108.65119 * 138.75505 * 10 9 8 13 13 C 1.54838 * 104.34847 * 224.15600 * 12 10 9 14 14 C 1.56522 * 103.24979 * 37.79442 * 13 12 10 15 15 H 1.08993 * 110.39321 * 80.95302 * 14 13 12 16 16 N 1.46498 * 111.28316 * 204.04093 * 14 13 12 17 17 C 1.36937 * 120.00194 * 269.43613 * 16 14 13 18 18 H 1.08003 * 119.99781 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00279 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99750 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47208 * 89.99786 * 21 19 17 23 23 H 1.48496 * 109.47314 * 209.99674 * 21 19 17 24 24 H 1.48506 * 109.47257 * 330.00247 * 21 19 17 25 25 C 1.54143 * 103.54938 * 322.70775 * 14 13 12 26 26 H 1.09002 * 111.89377 * 259.63161 * 25 14 13 27 27 C 1.48347 * 128.19617 * 179.97438 * 8 6 5 28 28 C 1.36090 * 107.10621 * 0.02562 * 5 4 3 29 29 O 1.34042 * 125.38043 * 269.69984 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 31 31 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 34 34 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 35 35 H 1.08999 * 110.46923 * 256.93003 * 9 8 6 36 36 H 1.08998 * 110.46251 * 19.52156 * 9 8 6 37 37 H 1.09004 * 110.45567 * 342.87431 * 12 10 9 38 38 H 1.08999 * 110.46148 * 105.31364 * 12 10 9 39 39 H 1.09000 * 110.75899 * 156.53593 * 13 12 10 40 40 H 1.08991 * 110.76300 * 279.73040 * 13 12 10 41 41 H 0.96998 * 120.00172 * 89.43671 * 16 14 13 42 42 H 0.97004 * 120.00038 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.46497 * 340.48330 * 27 8 6 44 44 H 1.09007 * 110.46165 * 102.93863 * 27 8 6 45 45 H 1.08001 * 126.52908 * 179.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7177 3.3572 0.6640 6 6 3.1116 4.4724 1.5441 7 8 3.4839 5.5251 1.0621 8 7 3.0591 4.3253 2.8827 9 6 2.6315 3.1357 3.6588 10 6 3.6636 3.0452 4.8101 11 1 4.4728 2.3514 4.5820 12 6 2.9204 2.6834 6.1111 13 6 3.5294 3.6279 7.1763 14 6 3.7389 4.9659 6.3916 15 1 2.8034 5.5220 6.3325 16 7 4.7852 5.7855 7.0078 17 6 4.4581 6.7041 7.9692 18 1 3.4288 6.8240 8.2735 19 6 5.4494 7.4811 8.5527 20 7 6.7037 7.3353 8.1815 21 14 5.0031 8.7347 9.8637 22 1 5.0638 8.0941 11.2022 23 1 5.9624 9.8670 9.8129 24 1 3.6281 9.2393 9.6185 25 6 4.1769 4.4976 4.9898 26 1 5.2564 4.5687 4.8564 27 6 3.4099 5.3168 3.9290 28 6 2.7191 3.3619 -0.6969 29 8 2.2965 2.1506 -1.0929 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6265 3.2803 4.0553 36 1 2.6720 2.2408 3.0377 37 1 1.8517 2.8691 6.0036 38 1 3.1005 1.6414 6.3756 39 1 2.8386 3.7691 8.0076 40 1 4.4856 3.2442 7.5316 41 1 5.7096 5.6775 6.7348 42 1 7.3965 7.8780 8.5895 43 1 4.0483 6.0975 3.5155 44 1 2.5078 5.7517 4.3596 45 1 3.0091 4.1824 -1.3366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026246169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:00 Heat of formation + Delta-G solvation = -20.242511 kcal Electronic energy + Delta-G solvation = -26874.220661 eV Core-core repulsion = 23085.571338 eV Total energy + Delta-G solvation = -3788.649323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.50493 -41.35388 -39.62555 -36.69900 -36.05872 -35.00952 -34.77806 -32.72135 -31.07293 -30.33437 -29.69011 -26.85478 -25.93833 -25.19701 -24.67676 -23.76787 -22.23284 -21.53979 -20.54959 -20.30504 -19.12573 -18.59323 -17.91464 -17.80515 -17.16301 -16.87020 -16.53374 -15.95237 -15.68333 -15.52179 -15.42016 -14.99521 -14.81443 -14.53941 -14.41349 -13.89802 -13.69440 -13.56160 -13.30449 -13.06363 -12.92334 -12.61546 -12.60400 -12.37134 -12.35804 -12.12467 -12.11168 -11.98470 -11.84708 -11.67798 -11.55437 -11.47487 -11.39278 -11.05359 -10.84383 -10.18676 -9.80283 -8.96858 -7.93474 -5.21426 0.01339 0.91228 1.46987 1.48620 1.51716 1.56857 1.79938 2.12665 2.56713 2.76350 3.31865 3.42487 3.52632 3.73462 3.74555 3.76552 4.06956 4.22259 4.23625 4.28921 4.33703 4.37702 4.45004 4.52455 4.55466 4.58854 4.61184 4.66226 4.72345 4.83371 4.90640 5.01475 5.03222 5.04584 5.08844 5.10960 5.26206 5.30848 5.39813 5.41790 5.47710 5.52961 5.62325 6.28965 6.34151 6.47737 6.90463 7.34401 8.11634 8.33599 9.30303 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002745 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.060933 B =10198.392251 C =10960.294058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.027 4.027 3 C 0.205 3.795 4 N -0.475 5.475 5 C -0.093 4.093 6 C 0.610 3.390 7 O -0.581 6.581 8 N -0.608 5.608 9 C 0.105 3.895 10 C -0.091 4.091 11 H 0.091 0.909 12 C -0.098 4.098 13 C -0.139 4.139 14 C 0.177 3.823 15 H 0.056 0.944 16 N -0.733 5.733 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.971 3.029 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.269 1.269 25 C -0.102 4.102 26 H 0.064 0.936 27 C 0.118 3.882 28 C 0.027 3.973 29 O -0.193 6.193 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.385 -20.240 -18.733 31.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C -0.004 4.004 4 N -0.205 5.205 5 C -0.211 4.211 6 C 0.400 3.600 7 O -0.462 6.462 8 N -0.338 5.338 9 C -0.017 4.017 10 C -0.111 4.111 11 H 0.109 0.891 12 C -0.136 4.136 13 C -0.179 4.179 14 C 0.068 3.932 15 H 0.074 0.926 16 N -0.371 5.371 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.800 3.200 22 H -0.214 1.214 23 H -0.226 1.226 24 H -0.194 1.194 25 C -0.123 4.123 26 H 0.083 0.917 27 C -0.004 4.004 28 C -0.047 4.047 29 O -0.079 6.079 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -14.391 -19.767 -18.375 30.585 hybrid contribution 0.954 1.743 0.225 1.999 sum -13.437 -18.024 -18.150 28.894 Atomic orbital electron populations 1.21785 0.92277 1.04320 1.02233 1.20442 0.97301 0.81462 1.07240 1.27352 0.97435 0.97955 0.77659 1.70686 1.17062 1.02341 1.30406 1.21454 1.11979 0.94298 0.93397 1.16746 0.77220 0.85492 0.80562 1.90803 1.50902 1.29315 1.75195 1.49017 1.63447 1.17609 1.03768 1.23257 0.97304 0.88960 0.92164 1.22782 0.97844 0.94743 0.95701 0.89060 1.22290 0.99569 0.99625 0.92113 1.23326 0.99828 0.96514 0.98251 1.21631 0.91127 0.90811 0.89657 0.92646 1.42626 1.05828 1.43210 1.45478 1.19638 0.93411 1.11428 1.12238 0.90473 1.25550 0.95420 1.02866 1.03223 1.69823 1.00217 1.44801 1.47439 0.85171 0.77211 0.78424 0.79170 1.21352 1.22557 1.19399 1.22898 0.99023 0.95762 0.94598 0.91713 1.22518 0.99297 0.91538 0.87083 1.25664 0.96990 0.87037 0.95012 1.84435 1.63286 1.22141 1.38027 0.92933 0.92519 0.88553 0.86137 0.86342 0.89755 0.86318 0.89823 0.89628 0.92418 0.93450 0.79736 0.94176 0.92602 0.90056 0.73211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.90 71.98 0.71 -0.13 16 2 C -0.03 -0.17 6.56 29.85 0.20 0.02 16 3 C 0.21 3.22 7.56 88.39 0.67 3.89 16 4 N -0.48 -10.17 8.40 -293.04 -2.46 -12.63 16 5 C -0.09 -2.34 6.86 40.41 0.28 -2.07 16 6 C 0.61 19.76 7.92 86.66 0.69 20.45 16 7 O -0.58 -22.47 17.17 -4.09 -0.07 -22.54 16 8 N -0.61 -18.69 3.31 -809.71 -2.68 -21.37 16 9 C 0.10 2.52 6.28 86.67 0.54 3.06 16 10 C -0.09 -2.34 3.97 -9.05 -0.04 -2.38 16 11 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 12 C -0.10 -2.28 6.38 31.61 0.20 -2.08 16 13 C -0.14 -4.56 6.65 32.45 0.22 -4.35 16 14 C 0.18 6.88 3.15 46.61 0.15 7.02 16 15 H 0.06 2.17 7.14 -2.39 -0.02 2.16 16 16 N -0.73 -37.28 5.25 -315.34 -1.66 -38.94 16 17 C -0.24 -13.13 9.96 84.03 0.84 -12.29 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 21 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C -0.10 -3.49 3.59 -9.21 -0.03 -3.52 16 26 H 0.06 2.50 7.79 -2.39 -0.02 2.48 16 27 C 0.12 4.04 6.56 86.51 0.57 4.61 16 28 C 0.03 0.52 11.95 67.32 0.80 1.33 16 29 O -0.19 -3.20 10.73 0.38 0.00 -3.20 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.08 1.83 7.21 -2.39 -0.02 1.82 16 36 H 0.12 2.67 5.40 -2.39 -0.01 2.66 16 37 H 0.08 1.68 7.18 -2.39 -0.02 1.66 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.37 20.58 7.60 -92.71 -0.70 19.87 16 42 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.06 2.19 7.88 -2.39 -0.02 2.18 16 44 H 0.08 2.69 7.22 -2.38 -0.02 2.67 16 45 H 0.25 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -74.56 366.47 2.01 -72.55 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.31 Total: 28.21 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.25 Total: 9.45 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -6.51 Total: -133.40 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.07 Total: -25.74 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -74.56 2.01 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026246169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.310 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds