Wall clock time and date at job start Tue Mar 31 2020 12:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46917 * 2 1 4 4 O 1.33496 * 126.82660 * 275.17007 * 3 2 1 5 5 N 1.20658 * 113.15507 * 179.97438 * 4 3 2 6 6 C 1.30012 * 112.30452 * 359.71224 * 5 4 3 7 7 C 1.50697 * 127.33930 * 180.30566 * 6 5 4 8 8 C 1.37359 * 126.83021 * 95.14369 * 3 2 1 9 9 C 1.47399 * 128.56696 * 359.97438 * 8 3 2 10 10 O 1.21603 * 119.99934 * 264.72209 * 9 8 3 11 11 N 1.34774 * 119.99870 * 84.71414 * 9 8 3 12 12 C 1.47163 * 120.71019 * 5.14913 * 11 9 8 13 13 C 1.55888 * 107.95242 * 132.40701 * 12 11 9 14 14 H 1.09003 * 112.45651 * 181.85004 * 13 12 11 15 15 C 1.54546 * 108.44281 * 307.12990 * 13 12 11 16 16 C 1.53729 * 104.95666 * 88.28758 * 15 13 12 17 17 C 1.54553 * 104.94957 * 359.97438 * 16 15 13 18 18 H 1.09005 * 112.17509 * 146.28649 * 17 16 15 19 19 C 1.47157 * 120.70945 * 185.11821 * 11 9 8 20 20 N 1.48302 * 104.35659 * 24.57950 * 17 16 15 21 21 C 1.36940 * 128.08021 * 139.08456 * 20 17 16 22 22 H 1.08001 * 119.99292 * 345.12291 * 21 20 17 23 23 C 1.38811 * 120.00406 * 165.12239 * 21 20 17 24 24 N 1.31615 * 119.99933 * 351.24525 * 23 21 20 25 25 Si 1.86805 * 119.99913 * 171.23731 * 23 21 20 26 26 H 1.48501 * 109.46773 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.47094 * 300.00150 * 25 23 21 28 28 H 1.48499 * 109.46960 * 60.00307 * 25 23 21 29 29 H 1.08998 * 109.47032 * 184.85817 * 1 2 3 30 30 H 1.09005 * 109.47205 * 304.85452 * 1 2 3 31 31 H 1.09002 * 109.46920 * 64.85858 * 1 2 3 32 32 H 1.09002 * 109.47450 * 240.00214 * 2 1 3 33 33 H 1.08997 * 109.47305 * 119.99524 * 2 1 3 34 34 H 1.09003 * 109.46610 * 270.14269 * 7 6 5 35 35 H 1.08996 * 109.47229 * 30.14574 * 7 6 5 36 36 H 1.09002 * 109.47116 * 150.14851 * 7 6 5 37 37 H 1.09002 * 109.74964 * 252.36560 * 12 11 9 38 38 H 1.09007 * 109.75230 * 13.09530 * 12 11 9 39 39 H 1.08998 * 110.37053 * 207.00988 * 15 13 12 40 40 H 1.09005 * 110.36247 * 329.21085 * 15 13 12 41 41 H 1.08995 * 110.42172 * 241.07352 * 16 15 13 42 42 H 1.08993 * 110.20482 * 118.81941 * 16 15 13 43 43 H 1.08998 * 109.75019 * 107.63516 * 19 11 9 44 44 H 1.08996 * 109.74995 * 346.90160 * 19 11 9 45 45 H 0.97002 * 120.00139 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2082 2.2074 -1.0642 5 7 2.6227 3.3043 -0.7802 6 6 2.7909 3.4519 0.5006 7 6 3.2845 4.6793 1.2222 8 6 2.3997 2.1643 1.0950 9 6 2.3959 1.7715 2.5157 10 8 1.4430 2.0456 3.2198 11 7 3.4484 1.1084 3.0343 12 6 4.6559 0.8674 2.2284 13 6 5.8946 1.2604 3.0894 14 1 6.8331 1.1401 2.5481 15 6 5.6891 2.6999 3.6131 16 6 4.9259 2.5351 4.9373 17 6 4.7348 1.0102 5.1003 18 1 4.7665 0.7009 6.1451 19 6 3.4150 0.6106 4.4187 20 7 5.8364 0.4145 4.3059 21 6 6.6210 -0.6617 4.6240 22 1 6.6400 -1.0352 5.6372 23 6 7.3917 -1.2726 3.6445 24 7 7.2413 -0.9330 2.3818 25 14 8.6425 -2.5767 4.1183 26 1 9.3307 -3.0690 2.8980 27 1 9.6417 -1.9899 5.0470 28 1 7.9496 -3.7074 4.7867 29 1 -0.3633 -1.0240 0.0870 30 1 -0.3634 0.5873 0.8433 31 1 -0.3633 0.4366 -0.9303 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.3705 4.6394 1.3058 35 1 2.9954 5.5698 0.6641 36 1 2.8445 4.7163 2.2188 37 1 4.7109 -0.1859 1.9533 38 1 4.6275 1.4826 1.3290 39 1 6.6514 3.1801 3.7904 40 1 5.1010 3.2814 2.9031 41 1 3.9586 3.0345 4.8834 42 1 5.5144 2.9345 5.7632 43 1 3.3148 -0.4747 4.4175 44 1 2.5755 1.0580 4.9508 45 1 7.7797 -1.3601 1.6972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029579331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:47 Heat of formation + Delta-G solvation = 55.423603 kcal Electronic energy + Delta-G solvation = -29009.642784 eV Core-core repulsion = 25224.274589 eV Total energy + Delta-G solvation = -3785.368194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.72191 -39.98216 -37.81928 -34.79216 -34.42915 -33.71509 -32.50736 -30.75563 -30.09020 -29.33509 -28.70387 -26.52758 -24.72916 -23.90404 -23.74675 -23.08852 -20.46011 -19.72108 -19.51953 -18.69068 -17.82995 -17.38714 -16.51331 -15.93608 -15.50479 -15.41609 -14.78156 -14.65359 -14.02749 -13.84576 -13.57247 -13.39280 -13.13177 -13.03365 -12.93581 -12.92117 -12.73898 -12.50791 -11.85471 -11.80203 -11.67058 -11.64824 -11.49460 -11.14329 -10.92970 -10.85707 -10.83067 -10.45097 -10.14176 -9.94515 -9.81472 -9.69817 -9.64830 -9.63251 -9.17722 -8.83987 -8.16690 -6.91255 -5.91223 -3.26335 1.46082 2.06034 2.74898 2.98376 3.31878 3.37686 3.37967 3.56997 4.21889 4.33484 4.36541 4.84709 4.92833 5.06986 5.10052 5.18842 5.26298 5.31063 5.49741 5.51572 5.60685 5.65129 5.66032 5.73352 5.74037 5.78492 5.84925 5.89828 5.96946 6.04212 6.08311 6.10314 6.24789 6.32680 6.48864 6.53110 6.58049 6.67685 6.83045 6.87787 7.17423 7.39571 7.59041 7.93078 8.06740 8.34634 8.51690 8.98904 9.61036 10.37188 11.21776 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.004856 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.438307 B = 5764.111377 C = 6219.342436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C 0.013 3.987 4 O 0.094 5.906 5 N -0.360 5.360 6 C 0.053 3.947 7 C -0.077 4.077 8 C -0.228 4.228 9 C 0.589 3.411 10 O -0.551 6.551 11 N -0.578 5.578 12 C 0.107 3.893 13 C 0.169 3.831 14 H 0.122 0.878 15 C -0.136 4.136 16 C -0.124 4.124 17 C 0.134 3.866 18 H 0.079 0.921 19 C 0.102 3.898 20 N -0.584 5.584 21 C -0.226 4.226 22 H 0.076 0.924 23 C -0.002 4.002 24 N -0.916 5.916 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.284 1.284 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 5.080 -3.398 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.050 4.050 4 O 0.032 5.968 5 N -0.067 5.067 6 C -0.109 4.109 7 C -0.134 4.134 8 C -0.236 4.236 9 C 0.375 3.625 10 O -0.431 6.431 11 N -0.308 5.308 12 C -0.016 4.016 13 C 0.061 3.939 14 H 0.139 0.861 15 C -0.175 4.175 16 C -0.163 4.163 17 C 0.026 3.974 18 H 0.097 0.903 19 C -0.022 4.022 20 N -0.305 5.305 21 C -0.354 4.354 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.599 5.769 -4.168 11.162 hybrid contribution 0.682 -1.027 0.773 1.456 sum -7.917 4.742 -3.394 9.833 Atomic orbital electron populations 1.21777 0.93173 1.02893 1.02841 1.20214 0.96906 0.85937 1.05260 1.24570 0.99522 0.95740 0.85207 1.84481 1.61907 1.17147 1.33264 1.73562 1.17001 0.99521 1.16615 1.24687 1.00667 0.96434 0.89081 1.20231 1.01997 0.91552 0.99658 1.21941 1.11048 0.94949 0.95623 1.16937 0.82760 0.78404 0.84411 1.90745 1.35345 1.56512 1.60461 1.48171 1.15323 1.53164 1.14163 1.22962 0.84161 1.01853 0.92668 1.22286 0.96887 0.85935 0.88747 0.86099 1.22540 0.98958 0.99334 0.96695 1.22376 0.99118 0.97094 0.97687 1.21962 0.87792 0.92194 0.95493 0.90322 1.22422 0.99783 0.98720 0.81270 1.45171 1.34773 1.31799 1.18770 1.18970 1.17947 1.04429 0.94013 0.90592 1.24809 1.00975 0.99080 0.95048 1.69795 1.42274 1.45181 0.98931 0.86201 0.81221 0.81215 0.77105 1.21593 1.21174 1.21093 0.91111 0.91827 0.92038 0.88733 0.88349 0.89484 0.90208 0.89807 0.89861 0.92761 0.92644 0.93118 0.92602 0.92595 0.91606 0.90502 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.04 -0.53 6.41 -27.88 -0.18 -0.71 16 3 C 0.01 0.19 6.80 -34.63 -0.24 -0.05 16 4 O 0.09 1.42 11.06 18.64 0.21 1.62 16 5 N -0.36 -5.75 12.01 34.78 0.42 -5.33 16 6 C 0.05 0.84 7.55 -79.77 -0.60 0.23 16 7 C -0.08 -0.98 10.35 36.00 0.37 -0.61 16 8 C -0.23 -3.79 4.28 -102.89 -0.44 -4.23 16 9 C 0.59 10.78 7.39 -12.53 -0.09 10.68 16 10 O -0.55 -11.31 16.57 5.28 0.09 -11.23 16 11 N -0.58 -10.67 2.29 -171.58 -0.39 -11.06 16 12 C 0.11 2.11 5.78 -2.14 -0.01 2.10 16 13 C 0.17 3.59 3.22 -64.60 -0.21 3.38 16 14 H 0.12 2.93 6.32 -51.93 -0.33 2.61 16 15 C -0.14 -2.46 6.19 -25.54 -0.16 -2.62 16 16 C -0.12 -2.15 6.18 -25.54 -0.16 -2.31 16 17 C 0.13 2.56 4.27 -65.69 -0.28 2.28 16 18 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 19 C 0.10 1.89 5.94 -3.25 -0.02 1.87 16 20 N -0.58 -13.23 2.78 -151.46 -0.42 -13.65 16 21 C -0.23 -5.67 10.37 -15.06 -0.16 -5.83 16 22 H 0.08 1.87 7.84 -52.49 -0.41 1.46 16 23 C 0.00 -0.05 5.42 -17.43 -0.09 -0.15 16 24 N -0.92 -23.89 10.40 55.49 0.58 -23.32 16 25 Si 0.91 20.57 29.56 -169.99 -5.03 15.54 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.27 8.00 -51.93 -0.42 0.86 16 34 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.87 7.85 -51.93 -0.41 1.46 16 38 H 0.05 1.03 6.51 -51.93 -0.34 0.69 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.85 7.08 -51.93 -0.37 0.48 16 41 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.08 1.37 7.08 -51.93 -0.37 1.00 16 45 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -28.39 361.80 -7.79 -36.18 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.80 Total: 2.90 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.90 Total: 2.89 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.18 Total: -53.36 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.29 Total: -9.60 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.39 -7.79 -36.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029579331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.608 kcal (2) G-P(sol) polarization free energy of solvation -28.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds