Wall clock time and date at job start Tue Mar 31 2020 12:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47276 * 2 1 4 4 N 1.30008 * 127.33403 * 270.00188 * 3 2 1 5 5 O 1.20659 * 112.30573 * 179.97438 * 4 3 2 6 6 C 1.33495 * 113.15206 * 359.75179 * 5 4 3 7 7 C 1.37359 * 106.34295 * 0.39135 * 6 5 4 8 8 C 1.47392 * 128.56763 * 179.91325 * 7 6 5 9 9 O 1.21610 * 120.00140 * 219.22210 * 8 7 6 10 10 N 1.34779 * 120.00362 * 39.21486 * 8 7 6 11 11 C 1.45906 * 118.00338 * 355.71951 * 10 8 7 12 12 C 1.50798 * 107.74665 * 149.18309 * 11 10 8 13 13 C 1.51788 * 110.02539 * 61.17469 * 12 11 10 14 14 H 1.09002 * 107.84258 * 183.77003 * 13 12 11 15 15 C 1.51979 * 112.93482 * 302.59753 * 13 12 11 16 16 H 1.09001 * 109.21731 * 256.64469 * 15 13 12 17 17 C 1.54900 * 104.31723 * 140.23979 * 15 13 12 18 18 C 1.54132 * 103.68906 * 334.03061 * 17 15 13 19 19 N 1.46382 * 111.54564 * 65.67008 * 13 12 11 20 20 C 1.36944 * 125.62809 * 56.29341 * 19 13 12 21 21 H 1.08000 * 119.99699 * 359.97438 * 20 19 13 22 22 C 1.38810 * 119.99916 * 179.97438 * 20 19 13 23 23 N 1.31622 * 120.00106 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99786 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47094 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46612 * 120.00194 * 24 22 20 27 27 H 1.48498 * 109.47100 * 240.00307 * 24 22 20 28 28 C 1.44095 * 118.01275 * 175.69736 * 10 8 7 29 29 H 1.09001 * 109.47406 * 300.00366 * 1 2 3 30 30 H 1.09004 * 109.46760 * 60.00007 * 1 2 3 31 31 H 1.09002 * 109.47438 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46719 * 239.99743 * 2 1 3 33 33 H 1.09004 * 109.46760 * 119.99993 * 2 1 3 34 34 H 1.08002 * 126.83111 * 180.29556 * 6 5 4 35 35 H 1.08998 * 109.76288 * 268.53172 * 11 10 8 36 36 H 1.08996 * 109.77145 * 29.30816 * 11 10 8 37 37 H 1.09008 * 109.35697 * 300.76798 * 12 11 10 38 38 H 1.08999 * 108.58521 * 181.10874 * 12 11 10 39 39 H 1.09006 * 110.60627 * 215.43632 * 17 15 13 40 40 H 1.09000 * 110.60851 * 92.62729 * 17 15 13 41 41 H 1.09000 * 110.06266 * 146.84913 * 18 17 15 42 42 H 1.09005 * 110.06235 * 268.35003 * 18 17 15 43 43 H 0.96997 * 119.99771 * 179.97438 * 23 22 20 44 44 H 1.08993 * 107.86478 * 52.59832 * 28 10 8 45 45 H 1.09002 * 107.82768 * 296.58211 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2952 2.1641 -1.0337 5 8 2.6832 3.2630 -0.7209 6 6 2.7407 3.4427 0.6007 7 6 2.3292 2.2622 1.1696 8 6 2.2085 1.9240 2.5991 9 8 2.5283 0.8183 2.9915 10 7 1.7438 2.8402 3.4715 11 6 1.4630 4.1818 2.9714 12 6 0.3289 4.7487 3.7878 13 6 0.7335 4.8379 5.2480 14 1 -0.1308 5.1866 5.8134 15 6 1.1542 3.4980 5.8289 16 1 0.3478 3.1067 6.4492 17 6 2.3666 3.8357 6.7320 18 6 2.9406 5.1219 6.1061 19 7 1.8158 5.8029 5.4480 20 6 1.7855 7.1225 5.0831 21 1 0.9081 7.5300 4.6030 22 6 2.8826 7.9363 5.3302 23 7 3.9521 7.4395 5.9148 24 14 2.8415 9.7362 4.8318 25 1 1.5349 10.0442 4.1968 26 1 3.0192 10.5872 6.0356 27 1 3.9374 10.0078 3.8672 28 6 1.5540 2.4352 4.8413 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0508 4.3378 1.1194 35 1 2.3464 4.8100 3.0854 36 1 1.1788 4.1314 1.9203 37 1 -0.5446 4.1040 3.6894 38 1 0.0943 5.7446 3.4121 39 1 3.1030 3.0326 6.7018 40 1 2.0425 4.0190 7.7565 41 1 3.3612 5.7604 6.8830 42 1 3.7067 4.8711 5.3724 43 1 4.7188 8.0081 6.0871 44 1 2.4850 1.9882 5.1899 45 1 0.7884 1.6595 4.8570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036814521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:01 Heat of formation + Delta-G solvation = 57.615491 kcal Electronic energy + Delta-G solvation = -28360.589328 eV Core-core repulsion = 24575.316181 eV Total energy + Delta-G solvation = -3785.273147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.94932 -40.41362 -38.30861 -35.42442 -35.23609 -33.29437 -32.10662 -31.91217 -31.31445 -29.68610 -28.11751 -25.85981 -24.85912 -24.28540 -23.20307 -22.78181 -20.87280 -20.39137 -20.09903 -18.15168 -17.79097 -17.44102 -16.76717 -16.61659 -15.95966 -15.90815 -14.96138 -14.82603 -14.42273 -14.28091 -13.94525 -13.72987 -13.53411 -13.19520 -12.92605 -12.83803 -12.58112 -12.20236 -11.97016 -11.74672 -11.67700 -11.47496 -11.32872 -11.17862 -11.05652 -10.84544 -10.77942 -10.26998 -10.12998 -10.07707 -10.00330 -9.87944 -9.72954 -9.63841 -9.53736 -8.71052 -8.34929 -6.93016 -5.77013 -3.16586 1.14369 1.75464 2.78332 3.01001 3.30917 3.32581 3.38784 3.41264 3.94398 4.24614 4.39325 4.63565 4.91778 5.02178 5.05372 5.07143 5.10715 5.14501 5.20793 5.32262 5.37891 5.44551 5.46715 5.65537 5.68944 5.73733 5.76569 5.90538 5.93190 5.97692 6.04877 6.10745 6.19008 6.30495 6.38940 6.42038 6.60110 6.72616 6.76647 6.90569 7.45779 7.47518 7.56969 7.77889 8.13476 8.23104 8.24345 9.12906 9.74261 10.38861 11.29044 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.004314 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.967690 B = 6489.346031 C = 7524.002356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.066 3.934 4 N -0.360 5.360 5 O 0.094 5.906 6 C -0.005 4.005 7 C -0.245 4.245 8 C 0.585 3.415 9 O -0.538 6.538 10 N -0.580 5.580 11 C 0.106 3.894 12 C -0.139 4.139 13 C 0.173 3.827 14 H 0.028 0.972 15 C -0.099 4.099 16 H 0.077 0.923 17 C -0.142 4.142 18 C 0.162 3.838 19 N -0.591 5.591 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.140 3.860 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.013 0.987 43 H 0.252 0.748 44 H 0.068 0.932 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -10.515 -7.426 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.096 4.096 4 N -0.067 5.067 5 O 0.035 5.965 6 C -0.087 4.087 7 C -0.252 4.252 8 C 0.372 3.628 9 O -0.416 6.416 10 N -0.311 5.311 11 C -0.016 4.016 12 C -0.179 4.179 13 C 0.064 3.936 14 H 0.046 0.954 15 C -0.119 4.119 16 H 0.096 0.904 17 C -0.181 4.181 18 C 0.037 3.963 19 N -0.315 5.315 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.018 3.982 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.247 0.753 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.704 -11.022 -8.455 15.017 hybrid contribution 0.094 1.132 0.646 1.307 sum -5.610 -9.890 -7.809 13.794 Atomic orbital electron populations 1.21701 0.93778 1.02413 1.02300 1.20038 0.96468 0.87652 1.04568 1.24775 0.99813 0.98649 0.86396 1.73625 1.16656 0.92764 1.23675 1.84568 1.62192 1.26494 1.23256 1.26763 0.98380 1.00066 0.83486 1.22262 1.12420 0.94864 0.95664 1.16951 0.77946 0.84514 0.83380 1.90760 1.49762 1.22212 1.78895 1.47023 1.63447 1.11715 1.08892 1.21459 1.00756 0.82011 0.97351 1.21593 0.96460 1.01269 0.98551 1.19835 0.92690 0.88431 0.92604 0.95443 1.21305 0.99209 0.94995 0.96364 0.90418 1.23130 0.96019 1.00435 0.98513 1.21464 0.89031 0.89239 0.96528 1.44316 1.12695 1.05337 1.69199 1.19023 1.00009 0.83368 1.32999 0.90365 1.24775 0.96174 0.98242 1.01011 1.69907 1.05199 1.34185 1.47254 0.86079 0.77306 0.84817 0.77749 1.20500 1.21777 1.21749 1.20314 1.01451 0.96193 0.80288 0.92347 0.92490 0.91465 0.89846 0.88311 0.75306 0.89665 0.91055 0.92578 0.90184 0.92050 0.92147 0.89089 0.96893 0.93746 0.91341 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.05 -0.56 6.55 -27.88 -0.18 -0.74 16 3 C 0.07 0.90 6.84 -79.77 -0.55 0.36 16 4 N -0.36 -5.01 12.01 34.78 0.42 -4.59 16 5 O 0.09 1.22 11.06 18.65 0.21 1.42 16 6 C -0.01 -0.06 9.95 30.41 0.30 0.24 16 7 C -0.24 -3.48 5.56 -102.90 -0.57 -4.05 16 8 C 0.59 9.44 7.57 -12.53 -0.09 9.34 16 9 O -0.54 -9.94 16.18 5.27 0.09 -9.85 16 10 N -0.58 -9.06 3.12 -180.17 -0.56 -9.62 16 11 C 0.11 1.60 4.77 -5.47 -0.03 1.57 16 12 C -0.14 -2.19 5.31 -28.45 -0.15 -2.34 16 13 C 0.17 3.15 2.95 -69.13 -0.20 2.95 16 14 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 15 C -0.10 -1.59 3.13 -91.39 -0.29 -1.88 16 16 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.14 -2.52 6.54 -25.14 -0.16 -2.68 16 18 C 0.16 3.64 5.69 -3.16 -0.02 3.63 16 19 N -0.59 -13.33 2.75 -165.92 -0.46 -13.78 16 20 C -0.23 -5.62 9.72 -15.06 -0.15 -5.77 16 21 H 0.08 1.89 7.54 -52.49 -0.40 1.49 16 22 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 23 N -0.92 -25.13 10.19 55.49 0.57 -24.57 16 24 Si 0.91 20.68 29.55 -169.99 -5.02 15.65 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.14 2.18 5.15 -6.58 -0.03 2.14 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.20 7.50 -51.93 -0.39 0.81 16 34 H 0.23 2.32 6.74 -52.49 -0.35 1.97 16 35 H 0.09 1.48 7.40 -51.93 -0.38 1.10 16 36 H 0.07 0.92 5.31 -51.93 -0.28 0.65 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.08 1.31 7.56 -51.93 -0.39 0.92 16 39 H 0.06 1.01 7.11 -51.93 -0.37 0.64 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 2.35 6.22 -51.93 -0.32 2.03 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.07 1.13 6.67 -51.93 -0.35 0.78 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -29.41 353.07 -7.89 -37.30 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.59 Total: 1.23 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.85 Total: 1.48 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.04 Total: -52.57 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.29 Total: -8.43 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.41 -7.89 -37.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036814521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.917 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds