Wall clock time and date at job start Tue Mar 31 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47129 * 2 1 4 4 O 1.33490 * 126.82989 * 269.69134 * 3 2 1 5 5 N 1.20658 * 113.15810 * 179.77500 * 4 3 2 6 6 C 1.30013 * 112.30062 * 0.50751 * 5 4 3 7 7 C 1.37356 * 126.82786 * 89.99775 * 3 2 1 8 8 C 1.47397 * 128.56635 * 359.97204 * 7 3 2 9 9 O 1.21612 * 119.99842 * 37.10163 * 8 7 3 10 10 N 1.34779 * 120.00160 * 217.10403 * 8 7 3 11 11 C 1.46596 * 119.68023 * 5.34378 * 10 8 7 12 12 C 1.54382 * 110.34980 * 132.09765 * 11 10 8 13 13 C 1.51521 * 107.26538 * 51.31393 * 12 11 10 14 14 H 1.09001 * 108.81472 * 53.29598 * 13 12 11 15 15 C 1.55365 * 107.77967 * 294.99654 * 13 12 11 16 16 H 1.08994 * 112.27939 * 309.15903 * 15 13 12 17 17 C 1.53741 * 100.22074 * 190.94011 * 15 13 12 18 18 C 1.55283 * 101.84503 * 39.09137 * 17 15 13 19 19 N 1.45463 * 117.34231 * 177.96091 * 13 12 11 20 20 C 1.36940 * 126.40441 * 329.35486 * 19 13 12 21 21 H 1.08004 * 119.99710 * 359.96758 * 20 19 13 22 22 C 1.38812 * 120.00384 * 179.97438 * 20 19 13 23 23 N 1.31624 * 119.99573 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00273 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47264 * 59.99871 * 24 22 20 26 26 H 1.48505 * 109.47089 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46917 * 299.99767 * 24 22 20 28 28 C 1.47722 * 119.68458 * 185.60862 * 10 8 7 29 29 H 1.08995 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46556 * 300.00040 * 1 2 3 31 31 H 1.08996 * 109.47313 * 59.99833 * 1 2 3 32 32 H 1.09002 * 109.46985 * 240.00550 * 2 1 3 33 33 H 1.08996 * 109.47313 * 120.00167 * 2 1 3 34 34 H 1.07997 * 127.34350 * 179.67940 * 6 5 4 35 35 H 1.09005 * 109.25135 * 252.45863 * 11 10 8 36 36 H 1.08993 * 109.26091 * 11.89629 * 11 10 8 37 37 H 1.09001 * 110.03874 * 291.80868 * 12 11 10 38 38 H 1.08999 * 109.79569 * 170.67795 * 12 11 10 39 39 H 1.09000 * 110.95552 * 157.23321 * 17 15 13 40 40 H 1.09005 * 110.95482 * 280.95301 * 17 15 13 41 41 H 1.09001 * 109.92094 * 96.86383 * 18 17 15 42 42 H 1.09005 * 109.92019 * 217.97378 * 18 17 15 43 43 H 0.97002 * 120.00028 * 180.02562 * 23 22 20 44 44 H 1.08996 * 110.07185 * 351.27048 * 28 10 8 45 45 H 1.09006 * 110.06415 * 112.84848 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.3046 2.1734 -1.0685 5 7 2.6898 3.2807 -0.7833 6 6 2.7549 3.4646 0.5021 7 6 2.3068 2.1971 1.0995 8 6 2.1823 1.8469 2.5258 9 8 2.4587 0.7241 2.9026 10 7 1.7622 2.7709 3.4124 11 6 1.3190 4.0848 2.9366 12 6 -0.0283 4.4651 3.5874 13 6 0.1296 4.2888 5.0841 14 1 1.0031 4.8512 5.4141 15 6 0.3601 2.7776 5.3620 16 1 -0.3899 2.1499 4.8809 17 6 0.2090 2.7555 6.8918 18 6 -0.9609 3.7528 7.1111 19 7 -1.0086 4.6344 5.9213 20 6 -1.9486 5.5951 5.6588 21 1 -1.8830 6.1819 4.7544 22 6 -2.9856 5.8148 6.5550 23 7 -3.0656 5.0993 7.6570 24 14 -4.2673 7.1256 6.1973 25 1 -4.9573 6.8081 4.9213 26 1 -5.2604 7.1611 7.3009 27 1 -3.6036 8.4493 6.0852 28 6 1.7582 2.4521 4.8548 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.0709 4.3575 1.0209 35 1 2.0698 4.8321 3.1937 36 1 1.1999 4.0536 1.8537 37 1 -0.8189 3.8118 3.2185 38 1 -0.2680 5.5038 3.3598 39 1 -0.0576 1.7586 7.2428 40 1 1.1184 3.1083 7.3785 41 1 -1.9001 3.2081 7.2075 42 1 -0.7811 4.3447 8.0086 43 1 -3.7904 5.2526 8.2831 44 1 1.9736 1.3942 5.0047 45 1 2.4964 3.0627 5.3748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036831908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:19 Heat of formation + Delta-G solvation = 57.024885 kcal Electronic energy + Delta-G solvation = -27881.984729 eV Core-core repulsion = 24096.685971 eV Total energy + Delta-G solvation = -3785.298757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.11095 -40.24782 -38.30268 -35.54179 -34.93602 -33.89195 -32.65280 -31.62156 -30.64111 -29.59268 -28.21224 -25.63532 -24.65772 -24.24939 -23.15635 -22.56706 -21.61420 -20.09603 -19.84846 -19.05654 -17.94894 -17.70185 -16.84045 -16.31903 -16.02549 -15.32570 -15.05183 -14.76484 -14.51416 -14.33171 -13.94246 -13.81968 -13.65556 -13.27065 -13.04215 -12.85853 -12.64497 -12.47617 -12.06785 -11.79995 -11.69245 -11.55420 -11.45848 -11.19946 -10.94041 -10.83075 -10.78379 -10.50203 -10.24511 -10.15042 -9.98807 -9.86362 -9.67197 -9.61915 -9.49122 -8.65458 -8.61302 -6.87697 -5.74895 -3.08402 0.96178 1.62085 2.57384 2.76013 3.09436 3.37492 3.42078 3.43320 4.00170 4.11432 4.42699 4.46829 4.63232 4.85565 4.89076 4.94705 5.02636 5.06462 5.20866 5.28125 5.42191 5.46635 5.51653 5.54690 5.56286 5.59471 5.73608 5.75106 5.83269 5.92711 5.96375 6.08997 6.12080 6.18034 6.29588 6.42697 6.56598 6.58685 6.76591 7.01147 7.34027 7.51504 7.57635 7.77577 7.95638 8.06535 8.20899 9.15803 9.79392 10.47171 11.37479 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.003553 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.388556 B = 7878.582706 C = 8465.538737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.042 3.958 4 O 0.092 5.908 5 N -0.355 5.355 6 C 0.023 3.977 7 C -0.254 4.254 8 C 0.596 3.404 9 O -0.538 6.538 10 N -0.596 5.596 11 C 0.105 3.895 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.020 0.980 15 C -0.123 4.123 16 H 0.080 0.920 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.594 5.594 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.127 3.873 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.202 0.798 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.253 0.747 44 H 0.092 0.908 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.748 -7.902 -12.791 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.022 4.022 4 O 0.031 5.969 5 N -0.060 5.060 6 C -0.159 4.159 7 C -0.261 4.261 8 C 0.383 3.617 9 O -0.417 6.417 10 N -0.327 5.327 11 C -0.018 4.018 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.037 0.963 15 C -0.144 4.144 16 H 0.098 0.902 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.006 3.994 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.218 0.782 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.932 -7.613 -13.527 18.985 hybrid contribution -0.811 0.808 0.669 1.326 sum 10.120 -6.805 -12.858 17.722 Atomic orbital electron populations 1.21770 0.92830 1.03205 1.02890 1.20397 0.97099 0.85666 1.05802 1.24821 0.96164 0.96111 0.85093 1.84557 1.61477 1.17492 1.33333 1.73661 1.16457 0.98459 1.17453 1.26451 1.01134 0.98986 0.89343 1.22090 1.13376 0.95147 0.95510 1.16898 0.77157 0.84426 0.83180 1.90769 1.51281 1.20347 1.79301 1.48132 1.62950 1.14437 1.07228 1.22106 0.97181 0.83406 0.99106 1.21966 0.95114 1.02201 0.97482 1.20622 0.91621 0.91800 0.89985 0.96265 1.22631 0.95428 0.99178 0.97152 0.90168 1.22719 1.00510 1.00393 0.93849 1.21526 0.94038 0.89717 0.89435 1.44189 1.27145 1.40715 1.19816 1.18938 1.02173 1.10043 1.04457 0.90470 1.24785 0.98934 0.99664 0.96899 1.69928 1.33385 1.42088 1.11418 0.86239 0.81303 0.81327 0.77126 1.21214 1.21589 1.21180 1.21697 0.97625 1.02256 0.77842 0.90793 0.91920 0.92025 0.88922 0.86895 0.78165 0.91416 0.90100 0.91361 0.90456 0.91993 0.92297 0.92723 0.94344 0.93678 0.88957 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.90 37.16 0.37 -0.87 16 2 C -0.05 -0.45 6.36 -27.88 -0.18 -0.63 16 3 C 0.04 0.46 6.80 -34.63 -0.24 0.23 16 4 O 0.09 1.05 11.06 18.66 0.21 1.26 16 5 N -0.36 -4.29 12.01 31.81 0.38 -3.91 16 6 C 0.02 0.25 10.06 -14.72 -0.15 0.11 16 7 C -0.25 -3.12 5.45 -102.89 -0.56 -3.68 16 8 C 0.60 8.46 7.54 -12.53 -0.09 8.37 16 9 O -0.54 -8.85 15.25 5.27 0.08 -8.77 16 10 N -0.60 -8.22 2.99 -173.49 -0.52 -8.74 16 11 C 0.11 1.33 5.32 -3.27 -0.02 1.32 16 12 C -0.13 -2.09 5.50 -26.75 -0.15 -2.24 16 13 C 0.17 3.21 2.57 -67.98 -0.17 3.04 16 14 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 15 C -0.12 -2.10 2.85 -89.36 -0.26 -2.36 16 16 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 17 C -0.14 -2.42 6.54 -25.14 -0.16 -2.59 16 18 C 0.18 4.15 5.45 -1.92 -0.01 4.14 16 19 N -0.59 -14.42 3.35 -163.09 -0.55 -14.96 16 20 C -0.23 -6.07 9.88 -15.06 -0.15 -6.22 16 21 H 0.08 1.96 7.21 -52.48 -0.38 1.59 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.50 10.44 55.49 0.58 -25.92 16 24 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 28 C 0.13 1.83 5.97 -3.76 -0.02 1.81 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 1.12 6.96 -51.93 -0.36 0.75 16 34 H 0.20 1.67 7.44 -52.49 -0.39 1.28 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.92 4.83 -51.93 -0.25 0.67 16 37 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 38 H 0.08 1.27 7.62 -51.93 -0.40 0.88 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 42 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.09 1.35 6.98 -51.93 -0.36 0.99 16 45 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -31.14 355.20 -8.06 -39.20 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.69 Total: -0.28 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.88 Total: 0.16 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.10 Total: -53.53 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.29 Total: -7.51 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.14 -8.06 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036831908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.227 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds