Wall clock time and date at job start Tue Mar 31 2020 12:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47129 * 2 1 4 4 O 1.33490 * 126.82989 * 269.69134 * 3 2 1 5 5 N 1.20658 * 113.15810 * 179.77500 * 4 3 2 6 6 C 1.30013 * 112.30062 * 0.50751 * 5 4 3 7 7 C 1.37356 * 126.82786 * 89.99775 * 3 2 1 8 8 C 1.47397 * 128.56635 * 359.97204 * 7 3 2 9 9 O 1.21612 * 119.99842 * 37.10163 * 8 7 3 10 10 N 1.34779 * 120.00160 * 217.10403 * 8 7 3 11 11 C 1.46596 * 119.68023 * 5.34378 * 10 8 7 12 12 C 1.54382 * 110.34980 * 132.09765 * 11 10 8 13 13 C 1.51521 * 107.26538 * 51.31393 * 12 11 10 14 14 H 1.09001 * 108.81472 * 53.29598 * 13 12 11 15 15 C 1.55365 * 107.77967 * 294.99654 * 13 12 11 16 16 H 1.08994 * 112.27939 * 309.15903 * 15 13 12 17 17 C 1.53741 * 100.22074 * 190.94011 * 15 13 12 18 18 C 1.55283 * 101.84503 * 39.09137 * 17 15 13 19 19 N 1.45463 * 117.34231 * 177.96091 * 13 12 11 20 20 C 1.36940 * 126.40441 * 329.35486 * 19 13 12 21 21 H 1.08004 * 119.99710 * 359.96758 * 20 19 13 22 22 C 1.38812 * 120.00384 * 179.97438 * 20 19 13 23 23 N 1.31624 * 119.99573 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00273 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47264 * 59.99871 * 24 22 20 26 26 H 1.48505 * 109.47089 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46917 * 299.99767 * 24 22 20 28 28 C 1.47722 * 119.68458 * 185.60862 * 10 8 7 29 29 H 1.08995 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46556 * 300.00040 * 1 2 3 31 31 H 1.08996 * 109.47313 * 59.99833 * 1 2 3 32 32 H 1.09002 * 109.46985 * 240.00550 * 2 1 3 33 33 H 1.08996 * 109.47313 * 120.00167 * 2 1 3 34 34 H 1.07997 * 127.34350 * 179.67940 * 6 5 4 35 35 H 1.09005 * 109.25135 * 252.45863 * 11 10 8 36 36 H 1.08993 * 109.26091 * 11.89629 * 11 10 8 37 37 H 1.09001 * 110.03874 * 291.80868 * 12 11 10 38 38 H 1.08999 * 109.79569 * 170.67795 * 12 11 10 39 39 H 1.09000 * 110.95552 * 157.23321 * 17 15 13 40 40 H 1.09005 * 110.95482 * 280.95301 * 17 15 13 41 41 H 1.09001 * 109.92094 * 96.86383 * 18 17 15 42 42 H 1.09005 * 109.92019 * 217.97378 * 18 17 15 43 43 H 0.97002 * 120.00028 * 180.02562 * 23 22 20 44 44 H 1.08996 * 110.07185 * 351.27048 * 28 10 8 45 45 H 1.09006 * 110.06415 * 112.84848 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.3046 2.1734 -1.0685 5 7 2.6898 3.2807 -0.7833 6 6 2.7549 3.4646 0.5021 7 6 2.3068 2.1971 1.0995 8 6 2.1823 1.8469 2.5258 9 8 2.4587 0.7241 2.9026 10 7 1.7622 2.7709 3.4124 11 6 1.3190 4.0848 2.9366 12 6 -0.0283 4.4651 3.5874 13 6 0.1296 4.2888 5.0841 14 1 1.0031 4.8512 5.4141 15 6 0.3601 2.7776 5.3620 16 1 -0.3899 2.1499 4.8809 17 6 0.2090 2.7555 6.8918 18 6 -0.9609 3.7528 7.1111 19 7 -1.0086 4.6344 5.9213 20 6 -1.9486 5.5951 5.6588 21 1 -1.8830 6.1819 4.7544 22 6 -2.9856 5.8148 6.5550 23 7 -3.0656 5.0993 7.6570 24 14 -4.2673 7.1256 6.1973 25 1 -4.9573 6.8081 4.9213 26 1 -5.2604 7.1611 7.3009 27 1 -3.6036 8.4493 6.0852 28 6 1.7582 2.4521 4.8548 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.0709 4.3575 1.0209 35 1 2.0698 4.8321 3.1937 36 1 1.1999 4.0536 1.8537 37 1 -0.8189 3.8118 3.2185 38 1 -0.2680 5.5038 3.3598 39 1 -0.0576 1.7586 7.2428 40 1 1.1184 3.1083 7.3785 41 1 -1.9001 3.2081 7.2075 42 1 -0.7811 4.3447 8.0086 43 1 -3.7904 5.2526 8.2831 44 1 1.9736 1.3942 5.0047 45 1 2.4964 3.0627 5.3748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036831908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:18 Heat of formation + Delta-G solvation = 38.733313 kcal Electronic energy + Delta-G solvation = -27882.777911 eV Core-core repulsion = 24096.685971 eV Total energy + Delta-G solvation = -3786.091940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.97520 -41.46999 -39.69614 -36.89828 -35.73133 -34.94719 -34.29714 -33.04351 -31.68893 -31.04237 -29.70298 -26.93490 -26.24733 -25.03468 -24.37932 -23.86406 -22.58071 -21.82473 -21.20309 -20.16535 -18.97793 -18.75998 -18.21561 -17.55560 -17.16110 -16.89703 -16.41053 -15.98261 -15.69682 -15.61374 -15.30950 -14.92625 -14.67733 -14.55034 -14.33121 -14.11124 -13.86799 -13.56814 -13.31325 -13.15818 -13.09311 -12.84309 -12.65334 -12.52600 -12.48707 -12.18581 -12.04048 -11.92518 -11.78047 -11.64186 -11.53358 -11.37429 -11.13727 -10.93541 -10.68946 -10.49323 -9.75886 -8.86211 -7.82481 -5.16737 0.06830 0.75858 1.46415 1.48770 1.54816 1.61454 1.77300 2.08862 2.51202 3.13850 3.29633 3.36227 3.43316 3.58150 3.77058 3.81823 3.92159 4.01208 4.12253 4.18202 4.21062 4.21845 4.32251 4.39788 4.49284 4.65362 4.70318 4.71340 4.76800 4.80164 4.82169 4.89641 4.94769 5.04548 5.05656 5.09633 5.20333 5.26740 5.43461 5.52764 5.54626 5.67584 5.78426 6.21879 6.24959 6.96534 7.10576 7.11589 7.81035 8.49416 9.29099 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.003553 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.388556 B = 7878.582706 C = 8465.538737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.052 3.948 4 O 0.089 5.911 5 N -0.372 5.372 6 C 0.035 3.965 7 C -0.278 4.278 8 C 0.600 3.400 9 O -0.564 6.564 10 N -0.597 5.597 11 C 0.115 3.885 12 C -0.123 4.123 13 C 0.158 3.842 14 H 0.028 0.972 15 C -0.109 4.109 16 H 0.061 0.939 17 C -0.121 4.121 18 C 0.182 3.818 19 N -0.616 5.616 20 C -0.231 4.231 21 H 0.087 0.913 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.972 3.028 25 H -0.279 1.279 26 H -0.298 1.298 27 H -0.276 1.276 28 C 0.136 3.864 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.228 0.772 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.015 0.985 42 H 0.004 0.996 43 H 0.244 0.756 44 H 0.093 0.907 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 -7.760 -14.838 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.012 4.012 4 O 0.031 5.969 5 N -0.079 5.079 6 C -0.148 4.148 7 C -0.285 4.285 8 C 0.388 3.612 9 O -0.445 6.445 10 N -0.328 5.328 11 C -0.008 4.008 12 C -0.162 4.162 13 C 0.051 3.949 14 H 0.045 0.955 15 C -0.129 4.129 16 H 0.079 0.921 17 C -0.159 4.159 18 C 0.057 3.943 19 N -0.340 5.340 20 C -0.360 4.360 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.801 3.199 25 H -0.205 1.205 26 H -0.225 1.225 27 H -0.202 1.202 28 C 0.014 3.986 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.244 0.756 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.033 0.967 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.629 -7.475 -15.625 21.436 hybrid contribution -1.319 0.731 1.277 1.976 sum 11.311 -6.744 -14.348 19.475 Atomic orbital electron populations 1.21754 0.92485 1.04110 1.02020 1.20508 0.97222 0.84547 1.06633 1.25234 0.94602 0.96633 0.84761 1.84557 1.61560 1.17486 1.33323 1.73659 1.17411 0.98832 1.18036 1.26839 0.99837 0.99181 0.88910 1.22000 1.15380 0.96409 0.94736 1.17058 0.76451 0.83881 0.83797 1.90755 1.52476 1.21386 1.79865 1.48142 1.62896 1.14842 1.06949 1.22118 0.95583 0.83419 0.99650 1.21881 0.96949 1.01817 0.95532 1.20873 0.89827 0.93041 0.91174 0.95496 1.22453 0.96898 0.97323 0.96229 0.92078 1.22583 0.98926 0.99539 0.94890 1.21298 0.94596 0.89989 0.88446 1.44481 1.28049 1.40451 1.21051 1.19359 1.02295 1.10060 1.04255 0.89574 1.25593 1.01269 1.02101 0.97126 1.70158 1.33830 1.43882 1.12410 0.85237 0.78757 0.79219 0.76665 1.20468 1.22473 1.20220 1.21585 0.95797 1.02774 0.78403 0.89092 0.94284 0.91292 0.86054 0.88044 0.75595 0.88659 0.88428 0.93213 0.90590 0.90411 0.90061 0.96666 0.97746 0.94630 0.88868 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.90 71.98 0.71 -1.48 16 2 C -0.05 -0.79 6.36 29.85 0.19 -0.60 16 3 C 0.05 1.04 6.80 25.48 0.17 1.21 16 4 O 0.09 1.84 11.06 77.01 0.85 2.69 16 5 N -0.37 -8.08 12.01 -54.19 -0.65 -8.73 16 6 C 0.03 0.66 10.06 87.29 0.88 1.54 16 7 C -0.28 -6.19 5.45 -18.74 -0.10 -6.30 16 8 C 0.60 15.80 7.54 86.65 0.65 16.46 16 9 O -0.56 -17.74 15.25 -4.07 -0.06 -17.80 16 10 N -0.60 -14.98 2.99 -821.06 -2.46 -17.44 16 11 C 0.12 2.56 5.32 86.83 0.46 3.03 16 12 C -0.12 -3.81 5.50 30.58 0.17 -3.64 16 13 C 0.16 5.87 2.57 45.51 0.12 5.99 16 14 H 0.03 1.00 7.91 -2.39 -0.02 0.98 16 15 C -0.11 -3.58 2.85 -9.98 -0.03 -3.61 16 16 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 17 C -0.12 -4.23 6.54 31.63 0.21 -4.02 16 18 C 0.18 8.81 5.45 86.84 0.47 9.28 16 19 N -0.62 -30.32 3.35 -669.91 -2.24 -32.56 16 20 C -0.23 -12.44 9.88 84.03 0.83 -11.61 16 21 H 0.09 4.36 7.21 -2.91 -0.02 4.34 16 22 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 23 N -0.95 -57.16 10.44 21.65 0.23 -56.93 16 24 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 28 C 0.14 3.59 5.97 85.90 0.51 4.10 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.87 6.96 -2.39 -0.02 1.85 16 34 H 0.23 2.84 7.44 -2.91 -0.02 2.82 16 35 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.10 1.91 4.83 -2.39 -0.01 1.89 16 37 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 38 H 0.08 2.38 7.62 -2.39 -0.02 2.36 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.08 2.50 8.12 -2.38 -0.02 2.49 16 41 H 0.01 0.84 7.21 -2.39 -0.02 0.82 16 42 H 0.00 0.23 7.77 -2.38 -0.02 0.22 16 43 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.09 2.52 6.98 -2.39 -0.02 2.50 16 45 H 0.09 2.11 8.08 -2.38 -0.02 2.09 16 Total: -1.00 -69.90 355.20 4.40 -65.50 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.00 Total: 11.07 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.71 Total: 6.99 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -5.13 Total: -115.67 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.79 Total: -15.11 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.90 4.40 -65.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036831908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.237 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds