Wall clock time and date at job start Tue Mar 31 2020 12:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46615 * 2 1 4 4 O 1.34258 * 126.52511 * 270.02071 * 3 2 1 5 5 C 1.34051 * 108.22971 * 179.97438 * 4 3 2 6 6 N 1.29933 * 109.23846 * 359.72646 * 5 4 3 7 7 C 1.36070 * 108.48008 * 0.43904 * 6 5 4 8 8 C 1.47418 * 126.44882 * 179.82158 * 7 6 5 9 9 O 1.21610 * 120.00215 * 179.69070 * 8 7 6 10 10 N 1.34784 * 119.99950 * 359.69388 * 8 7 6 11 11 C 1.47561 * 125.67208 * 359.69268 * 10 8 7 12 12 C 1.55433 * 104.87843 * 156.03412 * 11 10 8 13 13 C 1.53659 * 101.31556 * 35.82155 * 12 11 10 14 14 C 1.53662 * 111.41092 * 87.06213 * 13 12 11 15 15 C 1.55186 * 101.41618 * 155.03096 * 14 13 12 16 16 N 1.47567 * 105.00692 * 324.50715 * 15 14 13 17 17 C 1.36933 * 125.67562 * 203.83178 * 16 15 14 18 18 H 1.07997 * 119.99789 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00000 * 0.03795 * 17 16 15 20 20 N 1.31620 * 119.99958 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47321 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47458 * 120.00158 * 21 19 17 24 24 H 1.48504 * 109.46803 * 240.00298 * 21 19 17 25 25 C 1.47413 * 108.64907 * 23.86525 * 16 15 14 26 26 C 1.47401 * 125.67248 * 179.97438 * 10 8 7 27 27 H 1.09003 * 109.46382 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47028 * 300.00136 * 1 2 3 29 29 H 1.08999 * 109.47157 * 60.00443 * 1 2 3 30 30 H 1.08996 * 109.47309 * 239.99963 * 2 1 3 31 31 H 1.08999 * 109.47157 * 119.99557 * 2 1 3 32 32 H 1.08001 * 125.37646 * 179.97438 * 5 4 3 33 33 H 1.08996 * 110.33198 * 275.02119 * 11 10 8 34 34 H 1.08993 * 110.33556 * 37.25514 * 11 10 8 35 35 H 1.08998 * 111.25522 * 277.75579 * 12 11 10 36 36 H 1.08997 * 110.95346 * 153.76309 * 12 11 10 37 37 H 1.08993 * 111.03707 * 273.06444 * 14 13 12 38 38 H 1.09002 * 111.03478 * 36.99999 * 14 13 12 39 39 H 1.09001 * 110.33405 * 205.63041 * 15 14 13 40 40 H 1.08997 * 110.42351 * 83.43782 * 15 14 13 41 41 H 0.96998 * 119.99856 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.98497 * 238.53355 * 25 16 15 43 43 H 1.08994 * 109.98070 * 117.22739 * 25 16 15 44 44 H 1.09005 * 109.98636 * 301.45667 * 26 10 8 45 45 H 1.08998 * 109.98575 * 62.71986 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2982 2.1744 -1.0789 5 6 2.7219 3.3745 -0.6581 6 7 2.7237 3.3966 0.6411 7 6 2.3021 2.1846 1.0936 8 6 2.1586 1.7775 2.5032 9 8 1.7642 0.6601 2.7763 10 7 2.4647 2.6439 3.4893 11 6 2.9580 4.0219 3.3017 12 6 2.5711 4.7659 4.6104 13 6 2.7656 3.6572 5.6563 14 6 4.2170 3.6082 6.1586 15 6 4.0363 2.9618 7.5577 16 7 2.7555 3.4938 8.0619 17 6 2.3939 3.5902 9.3791 18 1 1.4292 3.9957 9.6459 19 6 3.2675 3.1670 10.3714 20 7 4.4436 2.6735 10.0462 21 14 2.7740 3.2978 12.1682 22 1 1.4125 3.8826 12.2664 23 1 2.7780 1.9458 12.7824 24 1 3.7395 4.1697 12.8845 25 6 1.9298 3.9036 6.9115 26 6 2.3679 2.3704 4.9345 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0119 4.1949 -1.2979 33 1 4.0397 4.0221 3.1684 34 1 2.4698 4.4855 2.4446 35 1 1.5340 5.1002 4.5831 36 1 3.2447 5.6023 4.7970 37 1 4.8330 2.9809 5.5144 38 1 4.6362 4.6110 6.2421 39 1 4.8534 3.2529 8.2179 40 1 3.9879 1.8763 7.4718 41 1 5.0541 2.3781 10.7396 42 1 1.6794 4.9614 6.9907 43 1 1.0187 3.3064 6.8756 44 1 1.3448 2.0982 5.1944 45 1 3.0484 1.5639 5.2074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041157504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:20 Heat of formation + Delta-G solvation = 22.376907 kcal Electronic energy + Delta-G solvation = -27360.866616 eV Core-core repulsion = 23574.065410 eV Total energy + Delta-G solvation = -3786.801207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.69174 -40.13580 -38.35129 -35.73019 -35.02232 -34.34055 -32.62901 -30.57209 -29.54243 -29.04867 -28.28039 -26.10364 -24.62407 -24.01429 -23.26582 -22.31486 -21.61282 -20.26988 -19.75752 -18.76900 -17.58506 -17.09500 -16.77320 -16.44022 -15.73700 -15.49169 -15.11490 -14.83063 -14.63036 -14.22976 -13.87706 -13.76582 -13.67933 -13.08111 -12.87850 -12.68029 -12.46289 -12.03460 -11.97844 -11.89157 -11.68732 -11.61607 -11.46526 -11.29454 -11.16423 -10.92384 -10.78327 -10.67578 -10.19945 -10.07084 -9.96693 -9.81761 -9.70825 -9.44580 -9.20841 -8.62422 -8.44389 -6.80304 -5.62392 -3.03696 0.89413 1.85460 2.29256 2.99978 3.26138 3.41902 3.47345 3.49870 3.79264 4.31698 4.47421 4.51627 4.76964 4.83345 4.91149 4.97626 5.05602 5.08846 5.27144 5.42928 5.49763 5.51244 5.53676 5.58428 5.67163 5.83148 5.85341 5.93616 5.94621 6.00407 6.06297 6.14625 6.18828 6.31046 6.35966 6.42241 6.58597 6.66279 6.79390 6.87228 7.20170 7.54901 7.60503 7.65699 7.88499 8.15643 8.38499 9.24813 9.85516 10.50929 11.41700 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.002816 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.841165 B = 9940.249034 C =10431.164845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.043 3.957 4 O -0.200 6.200 5 C 0.169 3.831 6 N -0.458 5.458 7 C -0.066 4.066 8 C 0.610 3.390 9 O -0.538 6.538 10 N -0.598 5.598 11 C 0.105 3.895 12 C -0.120 4.120 13 C -0.081 4.081 14 C -0.130 4.130 15 C 0.153 3.847 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.152 3.848 26 C 0.129 3.871 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.012 0.988 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.024 0.976 44 H 0.071 0.929 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 1.125 -24.398 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.013 4.013 4 O -0.087 6.087 5 C -0.059 4.059 6 N -0.187 5.187 7 C -0.185 4.185 8 C 0.397 3.603 9 O -0.416 6.416 10 N -0.330 5.330 11 C -0.017 4.017 12 C -0.158 4.158 13 C -0.083 4.083 14 C -0.169 4.169 15 C 0.028 3.972 16 N -0.331 5.331 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.025 3.975 26 C 0.008 3.992 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.270 0.730 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.030 0.970 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.287 0.949 -23.716 23.961 hybrid contribution -0.261 -0.221 0.382 0.513 sum -3.549 0.728 -23.334 23.613 Atomic orbital electron populations 1.21705 0.93030 1.02968 1.02429 1.20397 0.97147 0.85377 1.05455 1.23794 0.98714 0.95560 0.83264 1.84367 1.63708 1.24256 1.36330 1.28075 0.99395 0.87010 0.91445 1.70860 1.17083 1.21059 1.09736 1.21455 1.10296 0.91333 0.95459 1.16310 0.78132 0.83884 0.81965 1.90788 1.48078 1.19781 1.82952 1.48434 1.63574 1.14547 1.06460 1.22630 0.99404 0.80788 0.98881 1.22738 1.02129 0.97510 0.93431 1.21542 0.98571 0.93208 0.94933 1.22905 0.92996 1.01170 0.99814 1.21992 0.91068 0.94366 0.89788 1.44645 1.14547 1.73231 1.00646 1.19122 1.00278 1.34843 0.80617 0.90450 1.24783 0.96613 1.01255 0.98106 1.69816 1.08326 1.48177 1.30766 0.86004 0.77500 0.77231 0.84808 1.20553 1.21797 1.21800 1.21090 0.93116 0.97380 0.85881 1.21910 1.02024 0.97894 0.77370 0.90992 0.91691 0.92702 0.89794 0.86379 0.73049 0.91501 0.88791 0.90866 0.89695 0.92363 0.91687 0.87688 0.97005 0.93830 0.95224 0.95850 0.91041 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 37.16 0.37 -0.88 16 2 C -0.05 -0.44 5.93 -27.88 -0.17 -0.60 16 3 C 0.04 0.48 6.69 -35.08 -0.23 0.25 16 4 O -0.20 -1.88 10.73 6.50 0.07 -1.81 16 5 C 0.17 1.33 13.19 51.96 0.69 2.02 16 6 N -0.46 -5.25 8.44 -11.48 -0.10 -5.35 16 7 C -0.07 -0.88 6.82 -83.02 -0.57 -1.44 16 8 C 0.61 9.76 7.85 -12.52 -0.10 9.66 16 9 O -0.54 -9.61 15.13 5.27 0.08 -9.53 16 10 N -0.60 -9.44 3.34 -171.97 -0.57 -10.01 16 11 C 0.11 1.42 6.10 -2.17 -0.01 1.40 16 12 C -0.12 -1.66 5.94 -25.10 -0.15 -1.81 16 13 C -0.08 -1.41 0.61 -154.02 -0.09 -1.51 16 14 C -0.13 -2.45 5.85 -25.23 -0.15 -2.60 16 15 C 0.15 3.72 5.85 -2.30 -0.01 3.70 16 16 N -0.60 -15.51 3.41 -170.41 -0.58 -16.09 16 17 C -0.22 -6.17 10.28 -15.06 -0.15 -6.33 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -27.06 10.09 55.49 0.56 -26.50 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 C 0.15 3.15 6.51 -3.64 -0.02 3.13 16 26 C 0.13 2.26 6.02 -3.65 -0.02 2.24 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.31 6.48 -51.93 -0.34 0.97 16 32 H 0.25 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.19 6.14 -51.93 -0.32 0.87 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.08 1.09 7.78 -51.93 -0.40 0.69 16 37 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 38 H 0.06 1.18 7.82 -51.93 -0.41 0.78 16 39 H 0.11 2.88 5.89 -51.93 -0.31 2.57 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.03 0.60 7.86 -51.93 -0.41 0.20 16 43 H 0.02 0.50 7.41 -51.93 -0.38 0.11 16 44 H 0.07 1.30 7.44 -51.93 -0.39 0.91 16 45 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -33.15 358.72 -7.58 -40.73 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.69 Total: -0.86 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -0.72 Total: 6.79 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.69 Total: -57.96 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.15 Total: -11.34 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.15 -7.58 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041157504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.107 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds