Wall clock time and date at job start Tue Mar 31 2020 12:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46615 * 2 1 4 4 O 1.34258 * 126.52511 * 270.02071 * 3 2 1 5 5 C 1.34051 * 108.22971 * 179.97438 * 4 3 2 6 6 N 1.29933 * 109.23846 * 359.72646 * 5 4 3 7 7 C 1.36070 * 108.48008 * 0.43904 * 6 5 4 8 8 C 1.47418 * 126.44882 * 179.82158 * 7 6 5 9 9 O 1.21610 * 120.00215 * 179.69070 * 8 7 6 10 10 N 1.34784 * 119.99950 * 359.69388 * 8 7 6 11 11 C 1.47561 * 125.67208 * 359.69268 * 10 8 7 12 12 C 1.55433 * 104.87843 * 156.03412 * 11 10 8 13 13 C 1.53659 * 101.31556 * 35.82155 * 12 11 10 14 14 C 1.53662 * 111.41092 * 87.06213 * 13 12 11 15 15 C 1.55186 * 101.41618 * 155.03096 * 14 13 12 16 16 N 1.47567 * 105.00692 * 324.50715 * 15 14 13 17 17 C 1.36933 * 125.67562 * 203.83178 * 16 15 14 18 18 H 1.07997 * 119.99789 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00000 * 0.03795 * 17 16 15 20 20 N 1.31620 * 119.99958 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47321 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47458 * 120.00158 * 21 19 17 24 24 H 1.48504 * 109.46803 * 240.00298 * 21 19 17 25 25 C 1.47413 * 108.64907 * 23.86525 * 16 15 14 26 26 C 1.47401 * 125.67248 * 179.97438 * 10 8 7 27 27 H 1.09003 * 109.46382 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47028 * 300.00136 * 1 2 3 29 29 H 1.08999 * 109.47157 * 60.00443 * 1 2 3 30 30 H 1.08996 * 109.47309 * 239.99963 * 2 1 3 31 31 H 1.08999 * 109.47157 * 119.99557 * 2 1 3 32 32 H 1.08001 * 125.37646 * 179.97438 * 5 4 3 33 33 H 1.08996 * 110.33198 * 275.02119 * 11 10 8 34 34 H 1.08993 * 110.33556 * 37.25514 * 11 10 8 35 35 H 1.08998 * 111.25522 * 277.75579 * 12 11 10 36 36 H 1.08997 * 110.95346 * 153.76309 * 12 11 10 37 37 H 1.08993 * 111.03707 * 273.06444 * 14 13 12 38 38 H 1.09002 * 111.03478 * 36.99999 * 14 13 12 39 39 H 1.09001 * 110.33405 * 205.63041 * 15 14 13 40 40 H 1.08997 * 110.42351 * 83.43782 * 15 14 13 41 41 H 0.96998 * 119.99856 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.98497 * 238.53355 * 25 16 15 43 43 H 1.08994 * 109.98070 * 117.22739 * 25 16 15 44 44 H 1.09005 * 109.98636 * 301.45667 * 26 10 8 45 45 H 1.08998 * 109.98575 * 62.71986 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2982 2.1744 -1.0789 5 6 2.7219 3.3745 -0.6581 6 7 2.7237 3.3966 0.6411 7 6 2.3021 2.1846 1.0936 8 6 2.1586 1.7775 2.5032 9 8 1.7642 0.6601 2.7763 10 7 2.4647 2.6439 3.4893 11 6 2.9580 4.0219 3.3017 12 6 2.5711 4.7659 4.6104 13 6 2.7656 3.6572 5.6563 14 6 4.2170 3.6082 6.1586 15 6 4.0363 2.9618 7.5577 16 7 2.7555 3.4938 8.0619 17 6 2.3939 3.5902 9.3791 18 1 1.4292 3.9957 9.6459 19 6 3.2675 3.1670 10.3714 20 7 4.4436 2.6735 10.0462 21 14 2.7740 3.2978 12.1682 22 1 1.4125 3.8826 12.2664 23 1 2.7780 1.9458 12.7824 24 1 3.7395 4.1697 12.8845 25 6 1.9298 3.9036 6.9115 26 6 2.3679 2.3704 4.9345 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.0119 4.1949 -1.2979 33 1 4.0397 4.0221 3.1684 34 1 2.4698 4.4855 2.4446 35 1 1.5340 5.1002 4.5831 36 1 3.2447 5.6023 4.7970 37 1 4.8330 2.9809 5.5144 38 1 4.6362 4.6110 6.2421 39 1 4.8534 3.2529 8.2179 40 1 3.9879 1.8763 7.4718 41 1 5.0541 2.3781 10.7396 42 1 1.6794 4.9614 6.9907 43 1 1.0187 3.3064 6.8756 44 1 1.3448 2.0982 5.1944 45 1 3.0484 1.5639 5.2074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041157504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:19 Heat of formation + Delta-G solvation = -0.050730 kcal Electronic energy + Delta-G solvation = -27361.839151 eV Core-core repulsion = 23574.065410 eV Total energy + Delta-G solvation = -3787.773742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.45834 -41.47269 -39.74152 -37.27598 -35.89094 -35.11768 -34.43581 -32.19864 -30.69614 -30.41706 -29.75485 -27.64654 -26.18638 -24.91280 -24.38822 -23.53366 -22.49375 -22.16385 -20.74498 -20.23109 -18.94705 -18.43226 -17.90634 -17.46735 -16.90361 -16.84832 -16.54445 -16.00440 -15.90033 -15.59694 -15.34869 -15.07392 -14.64778 -14.43299 -14.16880 -13.84860 -13.71130 -13.58041 -13.47480 -13.16650 -12.96415 -12.85500 -12.78052 -12.65626 -12.50575 -12.39723 -12.12729 -11.98308 -11.86987 -11.70582 -11.54529 -11.45683 -11.15020 -11.07633 -10.74103 -10.09481 -9.65707 -8.88557 -7.76875 -5.21103 0.02309 1.06948 1.46720 1.47836 1.52217 1.58171 1.88956 2.17195 2.49934 3.03459 3.30777 3.46710 3.54535 3.56313 3.62680 3.76756 3.79193 4.07906 4.20975 4.23125 4.27267 4.30600 4.39921 4.54970 4.59139 4.66667 4.71977 4.75593 4.79356 4.90925 4.92244 4.93981 5.02752 5.04745 5.10366 5.16165 5.23698 5.27328 5.32946 5.37301 5.47465 5.62229 5.81978 6.30572 6.33617 6.50463 6.95925 7.10988 7.77946 8.42642 9.25476 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.002816 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.841165 B = 9940.249034 C =10431.164845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C 0.049 3.951 4 O -0.196 6.196 5 C 0.198 3.802 6 N -0.487 5.487 7 C -0.095 4.095 8 C 0.602 3.398 9 O -0.569 6.569 10 N -0.602 5.602 11 C 0.113 3.887 12 C -0.108 4.108 13 C -0.071 4.071 14 C -0.111 4.111 15 C 0.156 3.844 16 N -0.626 5.626 17 C -0.236 4.236 18 H 0.082 0.918 19 C -0.069 4.069 20 N -0.950 5.950 21 Si 0.980 3.020 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.289 1.289 25 C 0.148 3.852 26 C 0.136 3.864 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.307 0.693 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.073 0.927 40 H -0.021 1.021 41 H 0.246 0.754 42 H 0.044 0.956 43 H 0.018 0.982 44 H 0.057 0.943 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 3.023 -27.204 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.009 4.009 4 O -0.082 6.082 5 C -0.031 4.031 6 N -0.216 5.216 7 C -0.213 4.213 8 C 0.392 3.608 9 O -0.450 6.450 10 N -0.334 5.334 11 C -0.008 4.008 12 C -0.146 4.146 13 C -0.072 4.072 14 C -0.149 4.149 15 C 0.031 3.969 16 N -0.352 5.352 17 C -0.365 4.365 18 H 0.099 0.901 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.809 3.191 22 H -0.190 1.190 23 H -0.222 1.222 24 H -0.216 1.216 25 C 0.023 3.977 26 C 0.013 3.987 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.322 0.678 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.091 0.909 40 H -0.003 1.003 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.699 2.880 -26.541 26.952 hybrid contribution -0.158 -0.831 1.160 1.436 sum -3.857 2.048 -25.381 25.754 Atomic orbital electron populations 1.21669 0.92461 1.03756 1.01727 1.20434 0.97558 0.84811 1.05711 1.23960 0.97695 0.95997 0.83215 1.84414 1.63686 1.24710 1.35412 1.29290 0.95833 0.86996 0.90937 1.70777 1.18844 1.20377 1.11552 1.21119 1.12924 0.93063 0.94205 1.16792 0.77341 0.83467 0.83230 1.90760 1.49361 1.21088 1.83763 1.48498 1.63832 1.15629 1.05403 1.22707 0.99808 0.79287 0.99035 1.22747 1.03501 0.96655 0.91726 1.21380 0.96589 0.94787 0.94459 1.22711 0.94374 1.01483 0.96368 1.21756 0.89892 0.92834 0.92432 1.44948 1.15745 1.73257 1.01256 1.19503 1.00456 1.34450 0.82105 0.90054 1.25638 0.96773 1.01471 1.02239 1.70072 1.09231 1.49113 1.31576 0.84972 0.77729 0.76763 0.79640 1.19049 1.22237 1.21615 1.21259 0.92885 0.97699 0.85825 1.21635 1.00519 0.97361 0.79140 0.89552 0.94372 0.91246 0.86986 0.88606 0.67833 0.90902 0.87328 0.89726 0.87636 0.91014 0.90181 0.90903 1.00349 0.94409 0.93853 0.96415 0.92457 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.05 -0.86 5.93 29.85 0.18 -0.68 16 3 C 0.05 1.02 6.69 25.19 0.17 1.18 16 4 O -0.20 -3.01 10.73 0.36 0.00 -3.01 16 5 C 0.20 2.30 13.19 130.52 1.72 4.02 16 6 N -0.49 -9.81 8.44 -305.15 -2.57 -12.39 16 7 C -0.10 -2.43 6.82 40.41 0.28 -2.16 16 8 C 0.60 19.52 7.85 86.66 0.68 20.20 16 9 O -0.57 -21.29 15.13 -4.06 -0.06 -21.36 16 10 N -0.60 -18.86 3.34 -816.23 -2.73 -21.59 16 11 C 0.11 2.79 6.10 87.01 0.53 3.32 16 12 C -0.11 -2.72 5.94 31.65 0.19 -2.53 16 13 C -0.07 -2.43 0.61 -51.87 -0.03 -2.46 16 14 C -0.11 -4.15 5.85 31.57 0.18 -3.96 16 15 C 0.16 7.90 5.85 86.92 0.51 8.41 16 16 N -0.63 -32.90 3.41 -693.05 -2.36 -35.26 16 17 C -0.24 -13.49 10.28 84.03 0.86 -12.62 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 20 N -0.95 -57.79 10.09 21.65 0.22 -57.57 16 21 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 C 0.15 6.18 6.51 86.14 0.56 6.74 16 26 C 0.14 4.88 6.02 86.14 0.52 5.40 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 2.19 6.48 -2.39 -0.02 2.17 16 32 H 0.31 -0.36 8.06 -2.91 -0.02 -0.38 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.11 2.43 6.14 -2.39 -0.01 2.42 16 35 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 36 H 0.11 2.29 7.78 -2.39 -0.02 2.27 16 37 H 0.07 2.49 7.94 -2.39 -0.02 2.47 16 38 H 0.08 2.78 7.82 -2.39 -0.02 2.76 16 39 H 0.07 4.18 5.89 -2.39 -0.01 4.17 16 40 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.04 1.70 7.86 -2.39 -0.02 1.68 16 43 H 0.02 0.76 7.41 -2.39 -0.02 0.75 16 44 H 0.06 2.19 7.44 -2.38 -0.02 2.17 16 45 H 0.05 2.01 7.78 -2.39 -0.02 1.99 16 Total: -1.00 -76.06 358.72 3.04 -73.02 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.99 Total: 9.84 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 7.53 Total: 19.78 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -7.45 Total: -126.81 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -76.06 3.04 -73.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041157504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.968 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds