Wall clock time and date at job start Tue Mar 31 2020 12:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50691 * 109.47308 * 2 1 4 4 N 1.30012 * 127.33501 * 270.14790 * 3 2 1 5 5 O 1.20664 * 112.30367 * 180.26871 * 4 3 2 6 6 C 1.33487 * 113.15321 * 359.73938 * 5 4 3 7 7 C 1.50702 * 126.83027 * 180.02562 * 6 5 4 8 8 C 1.37366 * 106.34445 * 359.97438 * 6 5 4 9 9 C 1.47397 * 128.56732 * 179.97438 * 8 6 5 10 10 O 1.21602 * 120.00155 * 90.02396 * 9 8 6 11 11 N 1.34776 * 120.00026 * 270.03179 * 9 8 6 12 12 C 1.47810 * 135.00981 * 359.97438 * 11 9 8 13 13 C 1.54654 * 85.79158 * 153.81341 * 12 11 9 14 14 H 1.09001 * 114.43831 * 139.83687 * 13 12 11 15 15 C 1.53005 * 110.84164 * 270.23229 * 13 12 11 16 16 C 1.53102 * 109.44695 * 143.89493 * 15 13 12 17 17 N 1.46620 * 108.00406 * 301.01513 * 16 15 13 18 18 C 1.36938 * 119.88973 * 237.35054 * 17 16 15 19 19 H 1.07997 * 120.00119 * 25.15553 * 18 17 16 20 20 C 1.38816 * 120.00030 * 205.14677 * 18 17 16 21 21 N 1.31623 * 119.99943 * 13.88769 * 20 18 17 22 22 Si 1.86800 * 120.00083 * 193.88987 * 20 18 17 23 23 H 1.48498 * 109.47203 * 60.00023 * 22 20 18 24 24 H 1.48502 * 109.47059 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46963 * 299.99664 * 22 20 18 26 26 C 1.45680 * 120.21894 * 57.33407 * 17 16 15 27 27 C 1.46820 * 135.01419 * 180.02562 * 11 9 8 28 28 H 1.09004 * 111.55887 * 94.47439 * 27 11 9 29 29 H 1.08998 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47313 * 300.00194 * 1 2 3 31 31 H 1.09000 * 109.46794 * 60.00229 * 1 2 3 32 32 H 1.09007 * 109.47289 * 239.99397 * 2 1 3 33 33 H 1.09004 * 109.46832 * 120.00291 * 2 1 3 34 34 H 1.09009 * 109.46530 * 269.99453 * 7 6 5 35 35 H 1.09000 * 109.46898 * 29.98528 * 7 6 5 36 36 H 1.08997 * 109.47480 * 149.99745 * 7 6 5 37 37 H 1.09004 * 113.82163 * 39.60195 * 12 11 9 38 38 H 1.08998 * 113.82228 * 268.03162 * 12 11 9 39 39 H 1.09005 * 109.47352 * 263.88260 * 15 13 12 40 40 H 1.09000 * 109.47893 * 23.89723 * 15 13 12 41 41 H 1.08999 * 109.75759 * 60.64267 * 16 15 13 42 42 H 1.09000 * 109.75286 * 181.34325 * 16 15 13 43 43 H 0.96992 * 120.00109 * 179.97438 * 21 20 18 44 44 H 1.09002 * 108.71384 * 199.76808 * 26 17 16 45 45 H 1.09001 * 108.71495 * 81.74440 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2927 2.1650 -1.0337 5 8 2.6869 3.2617 -0.7208 6 6 2.7519 3.4387 0.6007 7 6 3.1989 4.6826 1.3245 8 6 2.3293 2.2620 1.1696 9 6 2.2096 1.9235 2.5992 10 8 1.1692 2.1400 3.1902 11 7 3.2534 1.3741 3.2513 12 6 4.6280 0.9788 2.8786 13 6 4.9744 1.2026 4.3691 14 1 5.6531 0.4611 4.7907 15 6 5.4081 2.6490 4.6159 16 6 4.8982 3.1076 5.9848 17 7 3.4369 2.9882 5.9873 18 6 2.6629 4.0874 6.2480 19 1 3.0481 5.0775 6.0539 20 6 1.3830 3.9290 6.7617 21 7 1.0102 2.7661 7.2526 22 14 0.1900 5.3664 6.7563 23 1 -0.0373 5.8158 5.3594 24 1 -1.1002 4.9410 7.3561 25 1 0.7592 6.4851 7.5499 26 6 2.8056 1.7043 5.7130 27 6 3.4960 0.9194 4.6261 28 1 3.3043 -0.1482 4.7346 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.2740 4.6355 1.4980 35 1 2.9667 5.5586 0.7189 36 1 2.6795 4.7534 2.2802 37 1 5.1194 1.6786 2.2026 38 1 4.7158 -0.0591 2.5573 39 1 6.4962 2.7109 4.5941 40 1 4.9919 3.2908 3.8394 41 1 5.3208 2.4757 6.7660 42 1 5.1841 4.1454 6.1556 43 1 0.1160 2.6555 7.6118 44 1 1.7719 1.8794 5.4149 45 1 2.8075 1.1111 6.6275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084824924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:12 Heat of formation + Delta-G solvation = 85.116236 kcal Electronic energy + Delta-G solvation = -28841.140352 eV Core-core repulsion = 25057.059727 eV Total energy + Delta-G solvation = -3784.080625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.76122 -40.40319 -37.66787 -35.25693 -35.19592 -33.46653 -32.16444 -31.33316 -30.18633 -29.22218 -27.72887 -26.96210 -24.87654 -23.91816 -23.80288 -22.55477 -21.09655 -20.21445 -19.55421 -18.02445 -17.65197 -17.44972 -16.46886 -15.84650 -15.72687 -15.47411 -14.65764 -14.33289 -14.23557 -13.77720 -13.61463 -13.35203 -13.25408 -13.23993 -13.04184 -12.73177 -12.65265 -12.47722 -12.34253 -11.93484 -11.65167 -11.53987 -11.49391 -11.15323 -10.84339 -10.71243 -10.66856 -10.50923 -10.23187 -9.99014 -9.89566 -9.83721 -9.74356 -9.23773 -9.05118 -8.33442 -8.17895 -6.62332 -5.67905 -3.10440 1.42643 1.98889 2.85059 2.98253 3.33980 3.45488 3.52030 3.53630 4.06675 4.33465 4.57422 4.66707 4.71511 5.01661 5.08217 5.15919 5.21905 5.25454 5.36890 5.39926 5.43956 5.45113 5.52755 5.58711 5.65487 5.68844 5.72650 5.84408 5.87299 5.97337 6.02788 6.09863 6.15162 6.16767 6.28033 6.34737 6.49144 6.55610 6.74924 6.96008 7.47171 7.74315 7.91449 8.19201 8.28372 8.54788 8.65470 9.33012 9.97052 10.45227 11.40310 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.005452 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.687990 B = 5134.291971 C = 5713.867976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C 0.053 3.947 4 N -0.361 5.361 5 O 0.090 5.910 6 C 0.014 3.986 7 C -0.079 4.079 8 C -0.233 4.233 9 C 0.616 3.384 10 O -0.502 6.502 11 N -0.621 5.621 12 C 0.096 3.904 13 C -0.109 4.109 14 H 0.088 0.912 15 C -0.116 4.116 16 C 0.147 3.853 17 N -0.584 5.584 18 C -0.255 4.255 19 H 0.063 0.937 20 C 0.012 3.988 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.164 3.836 27 C 0.126 3.874 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.106 0.894 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 -4.746 -12.670 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.109 4.109 4 N -0.067 5.067 5 O 0.028 5.972 6 C -0.049 4.049 7 C -0.136 4.136 8 C -0.240 4.240 9 C 0.402 3.598 10 O -0.376 6.376 11 N -0.357 5.357 12 C -0.027 4.027 13 C -0.128 4.128 14 H 0.106 0.894 15 C -0.156 4.156 16 C 0.020 3.980 17 N -0.307 5.307 18 C -0.385 4.385 19 H 0.081 0.919 20 C -0.187 4.187 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.038 3.962 27 C 0.023 3.977 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.124 0.876 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.475 -4.737 -13.674 16.288 hybrid contribution -0.720 0.480 0.565 1.034 sum 6.755 -4.256 -13.109 15.349 Atomic orbital electron populations 1.21735 0.93507 1.02423 1.02942 1.19941 0.96898 0.87605 1.03655 1.24706 1.00800 0.98576 0.86792 1.73549 1.16959 0.92740 1.23479 1.84486 1.62896 1.26869 1.22908 1.24659 0.98964 0.97973 0.83294 1.20495 1.02817 0.90339 0.99925 1.22104 1.11219 0.95061 0.95622 1.16301 0.82433 0.78117 0.82925 1.90907 1.27498 1.52320 1.66898 1.49782 1.12393 1.60586 1.12918 1.23560 0.81707 0.99521 0.97913 1.22868 0.96737 0.98996 0.94211 0.89406 1.21859 0.98664 0.93729 1.01334 1.20746 0.86052 0.98628 0.92536 1.43460 0.99143 1.07020 1.81062 1.19025 0.96530 0.86182 1.36719 0.91937 1.24938 0.99075 0.96673 0.98000 1.69979 1.19052 1.23258 1.42428 0.86403 0.80799 0.81987 0.77734 1.21042 1.21677 1.21124 1.20150 0.98491 0.85756 0.91772 1.22780 0.93018 0.98297 0.83622 0.90803 0.91516 0.91574 0.92469 0.89843 0.89647 0.88971 0.89477 0.87877 0.90922 0.90484 0.92683 0.92130 0.96197 0.92515 0.93681 0.87591 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.90 37.16 0.37 -1.44 16 2 C -0.04 -0.53 6.54 -27.89 -0.18 -0.72 16 3 C 0.05 0.82 6.84 -79.77 -0.55 0.27 16 4 N -0.36 -5.58 12.01 34.78 0.42 -5.16 16 5 O 0.09 1.33 11.06 18.66 0.21 1.54 16 6 C 0.01 0.21 7.55 -34.62 -0.26 -0.05 16 7 C -0.08 -0.98 10.33 36.01 0.37 -0.61 16 8 C -0.23 -3.94 6.01 -102.89 -0.62 -4.56 16 9 C 0.62 12.24 7.76 -12.53 -0.10 12.14 16 10 O -0.50 -12.53 16.22 5.28 0.09 -12.45 16 11 N -0.62 -10.91 3.34 -175.22 -0.59 -11.50 16 12 C 0.10 1.26 7.95 -3.00 -0.02 1.23 16 13 C -0.11 -1.57 4.39 -89.95 -0.40 -1.96 16 14 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.12 -1.79 5.66 -26.68 -0.15 -1.94 16 16 C 0.15 2.87 6.47 -3.92 -0.03 2.84 16 17 N -0.58 -14.25 3.02 -175.05 -0.53 -14.78 16 18 C -0.26 -7.00 9.55 -15.06 -0.14 -7.14 16 19 H 0.06 1.68 7.84 -52.49 -0.41 1.26 16 20 C 0.01 0.34 4.96 -17.43 -0.09 0.26 16 21 N -0.90 -26.88 10.91 55.49 0.61 -26.28 16 22 Si 0.90 22.79 29.58 -169.99 -5.03 17.77 16 23 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.16 3.94 4.61 -5.59 -0.03 3.92 16 27 C 0.13 2.31 4.24 -69.55 -0.29 2.01 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.60 8.11 -51.93 -0.42 1.18 16 37 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.00 7.69 -51.93 -0.40 0.60 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.09 7.89 -51.93 -0.41 0.68 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.11 3.01 4.83 -51.93 -0.25 2.76 16 45 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -33.58 368.53 -8.31 -41.89 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.93 Total: -0.84 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.11 Total: 4.25 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.09 Total: -57.71 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.29 Total: -10.91 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.58 -8.31 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084824924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.009 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds