Wall clock time and date at job start Tue Mar 31 2020 13:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99858 * 2 1 4 4 C 1.50701 * 109.47240 * 269.99496 * 3 2 1 5 5 H 1.08008 * 119.99564 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00534 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99744 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00431 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46982 * 89.99672 * 8 6 4 10 10 H 1.48492 * 109.47394 * 210.00240 * 8 6 4 11 11 H 1.48499 * 109.46784 * 330.00243 * 8 6 4 12 12 C 1.34778 * 120.00025 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99799 * 186.68532 * 12 2 1 14 14 C 1.50700 * 120.00090 * 6.68367 * 12 2 1 15 15 C 1.52999 * 109.47132 * 288.10734 * 14 12 2 16 16 C 1.52998 * 109.46993 * 168.10115 * 14 12 2 17 17 N 1.46507 * 109.46763 * 48.10709 * 14 12 2 18 18 C 1.34774 * 119.99498 * 182.67153 * 17 14 12 19 19 O 1.21584 * 120.00585 * 0.02562 * 18 17 14 20 20 N 1.34782 * 119.99679 * 179.97438 * 18 17 14 21 21 C 1.39943 * 119.99909 * 186.16464 * 20 18 17 22 22 C 1.38861 * 120.07400 * 31.56560 * 21 20 18 23 23 C 1.38113 * 119.93204 * 179.97438 * 22 21 20 24 24 C 1.38279 * 120.07240 * 359.97418 * 23 22 21 25 25 C 1.38284 * 120.13645 * 0.04820 * 24 23 22 26 26 C 1.38112 * 120.07016 * 359.95878 * 25 24 23 27 27 H 1.09002 * 109.47366 * 275.30143 * 1 2 3 28 28 H 1.09000 * 109.46735 * 35.30365 * 1 2 3 29 29 H 1.09002 * 109.47049 * 155.30182 * 1 2 3 30 30 H 1.09005 * 109.47485 * 29.99624 * 3 2 1 31 31 H 1.09003 * 109.47088 * 150.00012 * 3 2 1 32 32 H 0.97003 * 120.00038 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46699 * 179.97438 * 15 14 12 34 34 H 1.08992 * 109.47153 * 299.99782 * 15 14 12 35 35 H 1.08995 * 109.47167 * 59.99885 * 15 14 12 36 36 H 1.08989 * 109.47483 * 300.00681 * 16 14 12 37 37 H 1.09002 * 109.46831 * 60.00485 * 16 14 12 38 38 H 1.09001 * 109.46946 * 179.97438 * 16 14 12 39 39 H 0.97000 * 119.99943 * 2.66853 * 17 14 12 40 40 H 0.96996 * 119.99740 * 6.16486 * 20 18 17 41 41 H 1.08000 * 120.03234 * 359.70546 * 22 21 20 42 42 H 1.08001 * 119.96257 * 179.97438 * 23 22 21 43 43 H 1.07991 * 119.93229 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.96145 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.03384 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4369 3.4174 -3.4340 9 1 2.3064 4.2599 -3.9004 10 1 4.6968 4.2007 -3.4967 11 1 3.5542 2.2204 -4.3049 12 6 2.1389 -1.1672 0.0005 13 8 3.3455 -1.1707 0.1228 14 6 1.3931 -2.4680 -0.1508 15 6 0.6156 -2.7624 1.1336 16 6 2.3890 -3.5990 -0.4149 17 7 0.4590 -2.3673 -1.2750 18 6 -0.3584 -3.3985 -1.5662 19 8 -0.3210 -4.4121 -0.8957 20 7 -1.2181 -3.3058 -2.6001 21 6 -2.1550 -4.3209 -2.8242 22 6 -2.6747 -5.0369 -1.7540 23 6 -3.5995 -6.0378 -1.9785 24 6 -4.0086 -6.3268 -3.2674 25 6 -3.4926 -5.6158 -4.3354 26 6 -2.5674 -4.6139 -4.1175 27 1 -0.3634 0.0950 1.0233 28 1 -0.3633 0.8387 -0.5939 29 1 -0.3633 -0.9337 -0.4294 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.0301 4.4440 -0.8505 33 1 0.0759 -3.7030 1.0239 34 1 1.3105 -2.8373 1.9699 35 1 -0.0938 -1.9566 1.3217 36 1 2.9429 -3.3892 -1.3298 37 1 3.0840 -3.6739 0.4214 38 1 1.8496 -4.5399 -0.5239 39 1 0.4289 -1.5585 -1.8096 40 1 -1.1873 -2.5355 -3.1887 41 1 -2.3526 -4.8143 -0.7474 42 1 -4.0037 -6.5952 -1.1465 43 1 -4.7322 -7.1095 -3.4403 44 1 -3.8138 -5.8442 -5.3409 45 1 -2.1651 -4.0588 -4.9520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174755839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:30 Heat of formation + Delta-G solvation = -13.332841 kcal Electronic energy + Delta-G solvation = -27401.458093 eV Core-core repulsion = 23613.108395 eV Total energy + Delta-G solvation = -3788.349697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17128 -39.74169 -38.49682 -35.71283 -35.11497 -34.69191 -32.61329 -31.62733 -31.04865 -29.10644 -28.13622 -26.92020 -26.07686 -24.22384 -23.23784 -22.73110 -21.60370 -20.47449 -19.15225 -18.33787 -17.69337 -16.75379 -16.55806 -16.17570 -15.68953 -15.51092 -15.07831 -14.73757 -14.44291 -14.26789 -14.17828 -13.90748 -13.53486 -13.28005 -13.17712 -12.91231 -12.35698 -12.27724 -12.09459 -12.01647 -11.83451 -11.82215 -11.49896 -11.37505 -11.26211 -11.12612 -10.98794 -10.65397 -10.48618 -10.26887 -10.06134 -9.74432 -9.11898 -9.08398 -8.93047 -8.52690 -8.21047 -7.77200 -6.13537 -4.19614 1.16003 1.26578 2.30715 2.96274 3.22549 3.25902 3.30807 3.33779 3.71951 3.73892 4.02367 4.35280 4.71765 4.78014 4.79856 5.00590 5.13016 5.19098 5.22559 5.24756 5.37456 5.42983 5.56611 5.69123 5.82686 5.84392 5.86991 5.92290 6.06360 6.09873 6.14548 6.17564 6.29511 6.37876 6.43361 6.46817 6.49134 6.74352 6.91244 6.94677 7.34704 7.39901 7.75021 7.81539 8.11705 8.24587 8.36675 8.75359 8.91092 9.45838 10.94517 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003315 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.978935 B = 8445.192602 C = 9477.308410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.596 5.596 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.507 3.493 13 O -0.526 6.526 14 C 0.176 3.824 15 C -0.167 4.167 16 C -0.145 4.145 17 N -0.725 5.725 18 C 0.707 3.293 19 O -0.566 6.566 20 N -0.688 5.688 21 C 0.174 3.826 22 C -0.123 4.123 23 C -0.100 4.100 24 C -0.144 4.144 25 C -0.100 4.100 26 C -0.153 4.153 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.406 0.594 40 H 0.408 0.592 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 -15.643 -3.729 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.328 5.328 3 C 0.124 3.876 4 C -0.569 4.569 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.292 3.708 13 O -0.402 6.402 14 C 0.087 3.913 15 C -0.225 4.225 16 C -0.203 4.203 17 N -0.384 5.384 18 C 0.408 3.592 19 O -0.443 6.443 20 N -0.335 5.335 21 C 0.078 3.922 22 C -0.144 4.144 23 C -0.119 4.119 24 C -0.163 4.163 25 C -0.119 4.119 26 C -0.174 4.174 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.243 0.757 40 H 0.244 0.756 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.852 -16.278 -2.932 22.230 hybrid contribution 0.197 1.400 -1.610 2.142 sum -14.655 -14.878 -4.541 21.372 Atomic orbital electron populations 1.22266 0.81539 1.03581 1.01492 1.48172 1.06210 1.07716 1.70682 1.19349 0.92733 0.77915 0.97614 1.21373 1.37045 1.06481 0.92037 0.92553 1.24939 0.95247 0.96357 0.97485 1.69930 1.38022 1.14268 1.30794 0.86487 0.77786 0.78618 0.84458 1.20602 1.21021 1.19913 1.20161 0.87786 0.84488 0.78406 1.90696 1.13736 1.86448 1.49289 1.20539 0.88998 0.95212 0.86560 1.22342 1.00808 1.04191 0.95110 1.21981 0.97986 0.97371 1.02983 1.45671 1.40466 1.17725 1.34548 1.15869 0.78883 0.83654 0.80751 1.90870 1.71780 1.29533 1.52083 1.42726 1.35152 1.23995 1.31674 1.17526 0.90347 0.90768 0.93510 1.21253 0.96536 0.97220 0.99347 1.21049 0.96747 0.97094 0.97030 1.21102 1.01482 1.00865 0.92866 1.20898 0.96620 0.95353 0.99044 1.20867 1.01368 1.00356 0.94770 0.93474 0.90975 0.90264 0.94862 0.93601 0.92585 0.89077 0.91284 0.91780 0.92244 0.90868 0.90373 0.75655 0.75629 0.84328 0.85897 0.86234 0.85884 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 8.44 59.85 0.51 1.34 16 2 N -0.60 -11.90 2.80 -182.95 -0.51 -12.42 16 3 C 0.24 6.11 5.24 -5.19 -0.03 6.08 16 4 C -0.53 -14.30 9.39 -34.44 -0.32 -14.62 16 5 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.51 10.17 6.50 -10.98 -0.07 10.10 16 13 O -0.53 -12.84 15.53 5.56 0.09 -12.75 16 14 C 0.18 2.75 0.63 -132.97 -0.08 2.66 16 15 C -0.17 -2.30 8.10 37.16 0.30 -2.00 16 16 C -0.14 -2.29 7.81 37.16 0.29 -2.00 16 17 N -0.73 -9.63 3.09 -53.50 -0.17 -9.80 16 18 C 0.71 9.16 7.72 -86.92 -0.67 8.49 16 19 O -0.57 -8.56 10.15 5.29 0.05 -8.51 16 20 N -0.69 -7.18 5.35 -14.22 -0.08 -7.26 16 21 C 0.17 1.90 6.31 -83.69 -0.53 1.37 16 22 C -0.12 -1.40 8.67 -39.40 -0.34 -1.74 16 23 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 24 C -0.14 -1.22 10.04 -39.55 -0.40 -1.62 16 25 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 26 C -0.15 -1.41 9.96 -39.39 -0.39 -1.80 16 27 H 0.05 0.65 7.70 -51.93 -0.40 0.25 16 28 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 29 H 0.08 1.01 3.72 -51.93 -0.19 0.81 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.05 1.32 7.34 -51.93 -0.38 0.94 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.09 1.26 5.97 -51.93 -0.31 0.95 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.83 5.71 -51.93 -0.30 0.53 16 36 H 0.06 0.99 8.14 -51.94 -0.42 0.57 16 37 H 0.07 1.16 7.97 -51.93 -0.41 0.74 16 38 H 0.08 1.20 6.36 -51.93 -0.33 0.87 16 39 H 0.41 5.17 7.02 -40.82 -0.29 4.89 16 40 H 0.41 3.23 8.83 -40.82 -0.36 2.87 16 41 H 0.14 1.74 6.30 -52.49 -0.33 1.41 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -32.90 363.15 -8.28 -41.18 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.22 Total: 7.89 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.63 Total: 5.27 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.02 Total: -54.57 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.14 Total: -21.26 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.90 -8.28 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174755839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.849 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds