Wall clock time and date at job start Tue Mar 31 2020 13:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99858 * 2 1 4 4 C 1.50701 * 109.47240 * 269.99496 * 3 2 1 5 5 H 1.08008 * 119.99564 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00534 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99744 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00431 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46982 * 89.99672 * 8 6 4 10 10 H 1.48492 * 109.47394 * 210.00240 * 8 6 4 11 11 H 1.48499 * 109.46784 * 330.00243 * 8 6 4 12 12 C 1.34778 * 120.00025 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99799 * 186.68532 * 12 2 1 14 14 C 1.50700 * 120.00090 * 6.68367 * 12 2 1 15 15 C 1.52999 * 109.47132 * 288.10734 * 14 12 2 16 16 C 1.52998 * 109.46993 * 168.10115 * 14 12 2 17 17 N 1.46507 * 109.46763 * 48.10709 * 14 12 2 18 18 C 1.34774 * 119.99498 * 182.67153 * 17 14 12 19 19 O 1.21584 * 120.00585 * 0.02562 * 18 17 14 20 20 N 1.34782 * 119.99679 * 179.97438 * 18 17 14 21 21 C 1.39943 * 119.99909 * 186.16464 * 20 18 17 22 22 C 1.38861 * 120.07400 * 31.56560 * 21 20 18 23 23 C 1.38113 * 119.93204 * 179.97438 * 22 21 20 24 24 C 1.38279 * 120.07240 * 359.97418 * 23 22 21 25 25 C 1.38284 * 120.13645 * 0.04820 * 24 23 22 26 26 C 1.38112 * 120.07016 * 359.95878 * 25 24 23 27 27 H 1.09002 * 109.47366 * 275.30143 * 1 2 3 28 28 H 1.09000 * 109.46735 * 35.30365 * 1 2 3 29 29 H 1.09002 * 109.47049 * 155.30182 * 1 2 3 30 30 H 1.09005 * 109.47485 * 29.99624 * 3 2 1 31 31 H 1.09003 * 109.47088 * 150.00012 * 3 2 1 32 32 H 0.97003 * 120.00038 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46699 * 179.97438 * 15 14 12 34 34 H 1.08992 * 109.47153 * 299.99782 * 15 14 12 35 35 H 1.08995 * 109.47167 * 59.99885 * 15 14 12 36 36 H 1.08989 * 109.47483 * 300.00681 * 16 14 12 37 37 H 1.09002 * 109.46831 * 60.00485 * 16 14 12 38 38 H 1.09001 * 109.46946 * 179.97438 * 16 14 12 39 39 H 0.97000 * 119.99943 * 2.66853 * 17 14 12 40 40 H 0.96996 * 119.99740 * 6.16486 * 20 18 17 41 41 H 1.08000 * 120.03234 * 359.70546 * 22 21 20 42 42 H 1.08001 * 119.96257 * 179.97438 * 23 22 21 43 43 H 1.07991 * 119.93229 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.96145 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.03384 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4369 3.4174 -3.4340 9 1 2.3064 4.2599 -3.9004 10 1 4.6968 4.2007 -3.4967 11 1 3.5542 2.2204 -4.3049 12 6 2.1389 -1.1672 0.0005 13 8 3.3455 -1.1707 0.1228 14 6 1.3931 -2.4680 -0.1508 15 6 0.6156 -2.7624 1.1336 16 6 2.3890 -3.5990 -0.4149 17 7 0.4590 -2.3673 -1.2750 18 6 -0.3584 -3.3985 -1.5662 19 8 -0.3210 -4.4121 -0.8957 20 7 -1.2181 -3.3058 -2.6001 21 6 -2.1550 -4.3209 -2.8242 22 6 -2.6747 -5.0369 -1.7540 23 6 -3.5995 -6.0378 -1.9785 24 6 -4.0086 -6.3268 -3.2674 25 6 -3.4926 -5.6158 -4.3354 26 6 -2.5674 -4.6139 -4.1175 27 1 -0.3634 0.0950 1.0233 28 1 -0.3633 0.8387 -0.5939 29 1 -0.3633 -0.9337 -0.4294 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.0301 4.4440 -0.8505 33 1 0.0759 -3.7030 1.0239 34 1 1.3105 -2.8373 1.9699 35 1 -0.0938 -1.9566 1.3217 36 1 2.9429 -3.3892 -1.3298 37 1 3.0840 -3.6739 0.4214 38 1 1.8496 -4.5399 -0.5239 39 1 0.4289 -1.5585 -1.8096 40 1 -1.1873 -2.5355 -3.1887 41 1 -2.3526 -4.8143 -0.7474 42 1 -4.0037 -6.5952 -1.1465 43 1 -4.7322 -7.1095 -3.4403 44 1 -3.8138 -5.8442 -5.3409 45 1 -2.1651 -4.0588 -4.9520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174755839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:29 Heat of formation + Delta-G solvation = -34.395054 kcal Electronic energy + Delta-G solvation = -27402.371419 eV Core-core repulsion = 23613.108395 eV Total energy + Delta-G solvation = -3789.263023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.30618 -40.95799 -39.50804 -36.98266 -36.75204 -35.72183 -34.62138 -32.73196 -31.73859 -30.01693 -29.88980 -28.24249 -27.53277 -25.88009 -24.29729 -23.60570 -22.84762 -21.54044 -20.44066 -19.40444 -18.79938 -18.66940 -17.90370 -17.26638 -16.97270 -16.59967 -16.42166 -16.26552 -15.69115 -15.59803 -15.17562 -14.86915 -14.69221 -14.54247 -14.25111 -14.11565 -13.77495 -13.70868 -13.53166 -13.33765 -13.18798 -12.99951 -12.96412 -12.74908 -12.51776 -12.48910 -12.34977 -12.22112 -12.08193 -11.73246 -11.39448 -11.13929 -10.64522 -10.58312 -10.21545 -9.77470 -9.50340 -8.98588 -8.23175 -6.38219 0.43136 0.56045 1.15587 1.38287 1.41287 1.50860 1.84131 1.98168 2.14730 2.40315 2.99876 3.01623 3.07596 3.36302 3.87422 3.92777 4.07037 4.16365 4.33761 4.39264 4.51781 4.59854 4.61640 4.66012 4.67129 4.68156 4.75160 4.81559 4.91106 4.96515 5.11957 5.17913 5.19762 5.22214 5.28316 5.38695 5.48586 5.51253 5.65987 5.72324 5.78118 5.85368 6.02690 6.19179 6.58725 6.71181 6.81458 7.18422 7.34883 7.38255 8.84449 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003315 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.978935 B = 8445.192602 C = 9477.308410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.596 5.596 3 C 0.256 3.744 4 C -0.542 4.542 5 H 0.062 0.938 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.504 3.496 13 O -0.578 6.578 14 C 0.190 3.810 15 C -0.159 4.159 16 C -0.138 4.138 17 N -0.722 5.722 18 C 0.710 3.290 19 O -0.587 6.587 20 N -0.675 5.675 21 C 0.152 3.848 22 C -0.144 4.144 23 C -0.109 4.109 24 C -0.144 4.144 25 C -0.102 4.102 26 C -0.155 4.155 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.025 0.975 31 H 0.000 1.000 32 H 0.267 0.733 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.410 0.590 40 H 0.421 0.579 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.107 -16.699 -5.923 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.327 5.327 3 C 0.135 3.865 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.290 3.710 13 O -0.457 6.457 14 C 0.100 3.900 15 C -0.217 4.217 16 C -0.197 4.197 17 N -0.382 5.382 18 C 0.412 3.588 19 O -0.465 6.465 20 N -0.323 5.323 21 C 0.057 3.943 22 C -0.165 4.165 23 C -0.128 4.128 24 C -0.163 4.163 25 C -0.121 4.121 26 C -0.175 4.175 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.043 0.957 31 H 0.018 0.982 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.248 0.752 40 H 0.258 0.742 41 H 0.139 0.861 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.302 -17.342 -5.153 25.033 hybrid contribution 0.867 1.657 -0.916 2.083 sum -16.435 -15.685 -6.069 23.515 Atomic orbital electron populations 1.22527 0.78185 1.05184 1.03024 1.48113 1.08172 1.06143 1.70263 1.18847 0.91199 0.79954 0.96475 1.21688 1.36953 1.06625 0.92772 0.91999 1.25873 0.94909 0.96490 1.01905 1.70062 1.38850 1.14790 1.33167 0.85388 0.77893 0.78311 0.79054 1.18807 1.21201 1.19355 1.20888 0.87409 0.85676 0.77023 1.90667 1.16205 1.87359 1.51476 1.20256 0.89267 0.92085 0.88370 1.22306 1.00686 1.04792 0.93920 1.21923 0.97899 0.97666 1.02166 1.45478 1.40277 1.18250 1.34164 1.15837 0.78890 0.83018 0.81092 1.90862 1.72400 1.30236 1.53010 1.42536 1.34380 1.24496 1.30937 1.17727 0.90971 0.91332 0.94252 1.21256 0.97869 0.98545 0.98811 1.21284 0.96439 0.96783 0.98298 1.21451 1.01389 1.01079 0.92340 1.21290 0.95831 0.94574 1.00374 1.21132 1.01286 1.00606 0.94498 0.91723 0.90620 0.87678 0.95705 0.98213 0.92448 0.88587 0.91298 0.90656 0.93507 0.91371 0.89603 0.75191 0.74163 0.86100 0.84565 0.83795 0.83247 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.52 8.44 127.77 1.08 2.60 16 2 N -0.60 -24.00 2.80 -851.11 -2.38 -26.38 16 3 C 0.26 13.31 5.24 85.63 0.45 13.76 16 4 C -0.54 -29.52 9.39 25.60 0.24 -29.28 16 5 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 6 C 0.01 0.41 5.46 84.65 0.46 0.87 16 7 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 8 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 9 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 12 C 0.50 20.50 6.50 87.66 0.57 21.07 16 13 O -0.58 -29.35 15.53 -3.03 -0.05 -29.39 16 14 C 0.19 5.85 0.63 2.86 0.00 5.85 16 15 C -0.16 -4.22 8.10 71.98 0.58 -3.64 16 16 C -0.14 -4.37 7.81 71.98 0.56 -3.81 16 17 N -0.72 -18.29 3.09 -441.44 -1.36 -19.65 16 18 C 0.71 17.43 7.72 179.05 1.38 18.81 16 19 O -0.59 -17.18 10.15 -3.98 -0.04 -17.22 16 20 N -0.68 -12.94 5.35 -317.18 -1.70 -14.64 16 21 C 0.15 3.06 6.31 38.15 0.24 3.30 16 22 C -0.14 -3.14 8.67 22.39 0.19 -2.95 16 23 C -0.11 -1.91 10.04 22.25 0.22 -1.68 16 24 C -0.14 -2.03 10.04 22.29 0.22 -1.81 16 25 C -0.10 -1.39 10.04 22.25 0.22 -1.16 16 26 C -0.15 -2.46 9.96 22.39 0.22 -2.23 16 27 H 0.06 1.65 7.70 -2.39 -0.02 1.64 16 28 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 29 H 0.11 2.46 3.72 -2.39 -0.01 2.45 16 30 H 0.02 1.32 8.07 -2.38 -0.02 1.30 16 31 H 0.00 -0.02 7.34 -2.39 -0.02 -0.03 16 32 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.10 2.53 5.97 -2.39 -0.01 2.52 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.81 5.71 -2.39 -0.01 1.80 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 38 H 0.09 2.59 6.36 -2.39 -0.02 2.58 16 39 H 0.41 9.81 7.02 -92.71 -0.65 9.16 16 40 H 0.42 5.75 8.83 -92.71 -0.82 4.93 16 41 H 0.12 3.02 6.30 -2.91 -0.02 3.00 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.14 1.28 8.06 -2.92 -0.02 1.26 16 44 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -73.12 363.15 3.00 -70.12 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.44 Total: 27.09 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.66 Total: 19.70 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -5.16 Total: -115.30 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -0.09 Total: -46.62 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.12 3.00 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174755839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.724 kcal (2) G-P(sol) polarization free energy of solvation -73.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds