Wall clock time and date at job start Tue Mar 31 2020 13:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47257 * 2 1 4 4 H 1.09000 * 109.46798 * 54.57161 * 3 2 1 5 5 C 1.50693 * 109.47116 * 174.57194 * 3 2 1 6 6 H 1.08004 * 120.00125 * 114.40592 * 5 3 2 7 7 C 1.37877 * 120.00227 * 294.39564 * 5 3 2 8 8 N 1.31517 * 120.00180 * 158.43735 * 7 5 3 9 9 Si 1.86803 * 120.00204 * 338.44019 * 7 5 3 10 10 H 1.48500 * 109.46919 * 270.00009 * 9 7 5 11 11 H 1.48497 * 109.46901 * 29.99205 * 9 7 5 12 12 H 1.48499 * 109.47226 * 149.99536 * 9 7 5 13 13 N 1.46498 * 109.46888 * 294.57396 * 3 2 1 14 14 C 1.34773 * 120.00213 * 84.99896 * 13 3 2 15 15 O 1.21589 * 120.00272 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00231 * 179.97438 * 14 13 3 17 17 C 1.39972 * 120.00040 * 185.28146 * 16 14 13 18 18 C 1.38628 * 120.00493 * 327.97916 * 17 16 14 19 19 C 1.39452 * 119.78574 * 180.02562 * 18 17 16 20 20 C 1.47858 * 120.11484 * 180.02562 * 19 18 17 21 21 O 1.21552 * 120.00157 * 359.97438 * 20 19 18 22 22 N 1.34780 * 120.00455 * 180.02562 * 20 19 18 23 23 C 1.46495 * 120.00040 * 179.97438 * 22 20 19 24 24 C 1.39620 * 119.77665 * 359.97438 * 19 18 17 25 25 C 1.37976 * 119.99386 * 0.02562 * 24 19 18 26 26 C 1.38260 * 120.22082 * 359.71715 * 25 24 19 27 27 C 1.50701 * 119.88707 * 180.27511 * 26 25 24 28 28 H 1.08998 * 109.47388 * 300.00106 * 1 2 3 29 29 H 1.09005 * 109.47072 * 59.99960 * 1 2 3 30 30 H 1.08998 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47388 * 239.99894 * 2 1 3 32 32 H 1.09006 * 109.46955 * 119.99498 * 2 1 3 33 33 H 0.96998 * 119.99787 * 354.93542 * 8 7 5 34 34 H 0.97000 * 119.99952 * 264.99967 * 13 3 2 35 35 H 0.97000 * 120.00125 * 5.28311 * 16 14 13 36 36 H 1.08006 * 120.10449 * 359.97366 * 18 17 16 37 37 H 0.96997 * 119.99792 * 359.97438 * 22 20 19 38 38 H 1.09000 * 109.47375 * 60.00279 * 23 22 20 39 39 H 1.09004 * 109.46868 * 179.97438 * 23 22 20 40 40 H 1.09000 * 109.47664 * 299.99422 * 23 22 20 41 41 H 1.07998 * 120.00135 * 180.02562 * 24 19 18 42 42 H 1.08002 * 119.88721 * 180.02562 * 25 24 19 43 43 H 1.09004 * 109.47231 * 270.27851 * 27 26 25 44 44 H 1.08995 * 109.46787 * 30.28038 * 27 26 25 45 45 H 1.08999 * 109.46845 * 150.27811 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9836 0.8374 5 6 3.5409 1.4446 0.1344 6 1 4.1553 1.8048 -0.6776 7 6 4.1299 0.9869 1.2940 8 7 5.3827 0.5869 1.2817 9 14 3.1485 0.9350 2.8826 10 1 3.3071 2.2229 3.6047 11 1 1.7133 0.7158 2.5708 12 1 3.6450 -0.1750 3.7351 13 7 1.6612 2.0944 -1.2561 14 6 0.4448 2.6610 -1.3813 15 8 -0.3385 2.6308 -0.4518 16 7 0.0965 3.2611 -2.5367 17 6 -1.1211 3.9449 -2.6308 18 6 -2.2175 3.5120 -1.9013 19 6 -3.4286 4.1965 -1.9989 20 6 -4.6025 3.7414 -1.2236 21 8 -4.5131 2.7689 -0.5000 22 7 -5.7721 4.4043 -1.3201 23 6 -6.9353 3.9530 -0.5523 24 6 -3.5287 5.3136 -2.8305 25 6 -2.4316 5.7365 -3.5525 26 6 -1.2295 5.0609 -3.4514 27 6 -0.0343 5.5331 -4.2387 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8700 0.5442 0.4440 34 1 2.2859 2.1182 -1.9978 35 1 0.6897 3.2191 -3.3031 36 1 -2.1343 2.6470 -1.2600 37 1 -5.8436 5.1801 -1.8978 38 1 -6.7023 3.9837 0.5120 39 1 -7.7823 4.6078 -0.7575 40 1 -7.1868 2.9322 -0.8400 41 1 -4.4647 5.8466 -2.9085 42 1 -2.5108 6.6011 -4.1948 43 1 -0.0243 5.0436 -5.2126 44 1 -0.0928 6.6129 -4.3753 45 1 0.8785 5.2842 -3.6975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184558540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:08 Heat of formation + Delta-G solvation = -67.997637 kcal Electronic energy + Delta-G solvation = -27064.934002 eV Core-core repulsion = 23274.213861 eV Total energy + Delta-G solvation = -3790.720141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93794 -40.91102 -39.54405 -37.32357 -35.92769 -35.60992 -34.51689 -33.65384 -33.11691 -30.63590 -29.18947 -28.94947 -26.88892 -24.62090 -23.95778 -23.42397 -22.40255 -21.45777 -21.33599 -20.23916 -19.58282 -18.83229 -17.55655 -17.27355 -17.00959 -16.37943 -16.28160 -16.23819 -15.81209 -15.57462 -15.17527 -14.84638 -14.71868 -14.53723 -14.50543 -14.36909 -14.06159 -13.97417 -13.63210 -13.35023 -13.06043 -12.91951 -12.70397 -12.66185 -12.55588 -12.41706 -12.34341 -11.76105 -11.60268 -11.46237 -11.19262 -11.12156 -10.95056 -10.46795 -10.25954 -9.92255 -9.70312 -9.04421 -8.81950 -6.43412 -0.18495 0.38053 1.45371 1.47362 1.66233 1.70439 1.75605 2.15280 2.22779 2.40504 2.88136 2.95428 3.32737 3.69930 3.87204 4.01627 4.14882 4.28099 4.32359 4.36077 4.43046 4.47833 4.54026 4.59328 4.73256 4.82137 4.84011 4.91964 4.96012 5.04459 5.15436 5.19000 5.23859 5.28177 5.33646 5.37773 5.41396 5.49178 5.54144 5.61858 5.66989 5.99423 6.01567 6.12897 6.50347 6.53845 7.11590 7.18607 7.26298 7.59828 8.56509 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.003595 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.374786 B = 7787.662822 C = 9134.356042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 C 0.272 3.728 4 H 0.021 0.979 5 C -0.616 4.616 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.921 5.921 9 Si 1.063 2.937 10 H -0.275 1.275 11 H -0.260 1.260 12 H -0.277 1.277 13 N -0.711 5.711 14 C 0.691 3.309 15 O -0.607 6.607 16 N -0.675 5.675 17 C 0.142 3.858 18 C -0.096 4.096 19 C -0.146 4.146 20 C 0.549 3.451 21 O -0.588 6.588 22 N -0.713 5.713 23 C 0.083 3.917 24 C -0.089 4.089 25 C -0.100 4.100 26 C -0.086 4.086 27 C -0.118 4.118 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.262 0.738 34 H 0.402 0.598 35 H 0.420 0.580 36 H 0.114 0.886 37 H 0.420 0.580 38 H 0.045 0.955 39 H 0.122 0.878 40 H 0.049 0.951 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.065 14.157 -15.866 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.164 4.164 3 C 0.167 3.833 4 H 0.039 0.961 5 C -0.654 4.654 6 H 0.064 0.936 7 C -0.196 4.196 8 N -0.555 5.555 9 Si 0.886 3.114 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.203 1.203 13 N -0.364 5.364 14 C 0.391 3.609 15 O -0.487 6.487 16 N -0.324 5.324 17 C 0.047 3.953 18 C -0.118 4.118 19 C -0.150 4.150 20 C 0.337 3.663 21 O -0.469 6.469 22 N -0.366 5.366 23 C -0.061 4.061 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.089 4.089 27 C -0.174 4.174 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.236 0.764 35 H 0.259 0.741 36 H 0.132 0.868 37 H 0.258 0.742 38 H 0.064 0.936 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.185 0.815 42 H 0.194 0.806 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.513 13.057 -12.854 28.258 hybrid contribution 1.077 0.047 -2.050 2.316 sum -20.435 13.104 -14.904 28.486 Atomic orbital electron populations 1.21717 0.96045 0.99909 1.01002 1.22123 0.94691 0.98662 1.00942 1.18690 0.93441 0.89079 0.82137 0.96145 1.22167 0.91094 1.47969 1.04182 0.93604 1.26586 0.96892 0.91623 1.04521 1.70925 1.12126 1.41995 1.30431 0.83768 0.76012 0.77944 0.73653 1.20113 1.18442 1.20259 1.45236 1.13900 1.59024 1.18193 1.16227 0.82864 0.78775 0.83013 1.90913 1.51837 1.65079 1.40855 1.42451 1.20595 1.55799 1.13529 1.17482 0.84283 0.93721 0.99847 1.21399 0.91332 1.00298 0.98770 1.19772 0.92996 1.00009 1.02236 1.18691 0.84182 0.82401 0.81003 1.90786 1.85055 1.29323 1.41733 1.45559 1.10008 1.33010 1.48061 1.21726 0.87538 1.01237 0.95554 1.21565 1.00959 0.94004 0.94284 1.21242 0.90314 1.00633 0.99662 1.20273 0.98511 0.91834 0.98287 1.20891 0.93526 1.03522 0.99483 0.94806 0.93722 0.92855 0.92457 0.93031 0.92831 0.76370 0.74122 0.86844 0.74169 0.93642 0.85989 0.93228 0.81496 0.80602 0.88762 0.88555 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.52 71.98 0.61 -5.05 16 2 C -0.13 -5.76 5.06 30.60 0.15 -5.61 16 3 C 0.27 13.29 1.79 44.25 0.08 13.37 16 4 H 0.02 1.12 5.97 -2.39 -0.01 1.11 16 5 C -0.62 -33.68 8.96 25.60 0.23 -33.45 16 6 H 0.05 2.61 7.96 -2.91 -0.02 2.58 16 7 C 0.01 0.35 5.24 84.65 0.44 0.79 16 8 N -0.92 -55.54 13.70 21.45 0.29 -55.25 16 9 Si 1.06 51.97 26.36 68.60 1.81 53.78 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.26 -12.33 5.93 99.48 0.59 -11.74 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.71 -28.92 5.03 -461.42 -2.32 -31.24 16 14 C 0.69 27.45 7.01 179.06 1.26 28.71 16 15 O -0.61 -29.17 10.70 -4.00 -0.04 -29.21 16 16 N -0.67 -19.88 4.81 -317.28 -1.53 -21.41 16 17 C 0.14 4.06 6.33 38.10 0.24 4.30 16 18 C -0.10 -3.33 8.27 22.66 0.19 -3.14 16 19 C -0.15 -3.96 5.87 -20.10 -0.12 -4.08 16 20 C 0.55 16.10 7.77 86.79 0.67 16.77 16 21 O -0.59 -24.05 16.34 -3.88 -0.06 -24.12 16 22 N -0.71 -12.43 5.66 -487.46 -2.76 -15.19 16 23 C 0.08 1.22 10.70 127.77 1.37 2.59 16 24 C -0.09 -1.40 9.54 22.54 0.21 -1.18 16 25 C -0.10 -1.37 9.67 22.21 0.21 -1.16 16 26 C -0.09 -1.63 5.90 -19.69 -0.12 -1.75 16 27 C -0.12 -1.46 9.45 71.24 0.67 -0.79 16 28 H 0.03 1.59 7.87 -2.39 -0.02 1.57 16 29 H 0.04 1.97 5.63 -2.38 -0.01 1.95 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.05 2.45 5.70 -2.38 -0.01 2.43 16 33 H 0.26 15.72 8.73 -92.71 -0.81 14.91 16 34 H 0.40 14.07 8.55 -92.71 -0.79 13.27 16 35 H 0.42 9.13 7.74 -92.71 -0.72 8.41 16 36 H 0.11 5.09 5.55 -2.91 -0.02 5.07 16 37 H 0.42 3.55 6.86 -92.71 -0.64 2.91 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.17 1.02 6.40 -2.91 -0.02 1.00 16 42 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 45 H 0.06 0.88 7.11 -2.39 -0.02 0.87 16 Total: -1.00 -83.79 361.90 0.26 -83.53 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -1.25 Total: 28.77 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.12 Total: 10.33 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.31 Total: -123.08 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.11 Total: -53.33 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 1.81 Total: 53.78 kcal Total: -83.79 0.26 -83.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184558540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.529 kcal (2) G-P(sol) polarization free energy of solvation -83.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds