Wall clock time and date at job start Tue Mar 31 2020 13:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47044 * 2 1 4 4 H 1.09001 * 109.47079 * 305.72391 * 3 2 1 5 5 C 1.50697 * 109.47466 * 65.72619 * 3 2 1 6 6 O 1.21277 * 119.99878 * 34.21645 * 5 3 2 7 7 N 1.34774 * 120.00259 * 214.22709 * 5 3 2 8 8 N 1.40101 * 120.00369 * 184.94682 * 7 5 3 9 9 C 1.34775 * 119.99901 * 179.97438 * 8 7 5 10 10 O 1.21586 * 119.99704 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00516 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00380 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47230 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.46992 * 180.02562 * 13 12 11 15 15 H 1.08008 * 120.00074 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00257 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00463 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47054 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47006 * 119.99822 * 18 16 14 21 21 H 1.48502 * 109.47549 * 240.00235 * 18 16 14 22 22 C 1.50705 * 109.47150 * 185.72756 * 3 2 1 23 23 C 1.38230 * 119.99742 * 299.72450 * 22 3 2 24 24 C 1.38232 * 119.99899 * 179.79045 * 23 22 3 25 25 C 1.38236 * 120.00135 * 0.43679 * 24 23 22 26 26 C 1.38237 * 119.99463 * 359.81522 * 25 24 23 27 27 C 1.38229 * 120.00382 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47461 * 53.80050 * 1 2 3 29 29 H 1.09004 * 109.46895 * 173.79577 * 1 2 3 30 30 H 1.08993 * 109.47450 * 293.79629 * 1 2 3 31 31 H 1.09003 * 109.46978 * 239.99562 * 2 1 3 32 32 H 1.08995 * 109.46977 * 119.99667 * 2 1 3 33 33 H 0.97010 * 119.99822 * 4.94173 * 7 5 3 34 34 H 0.97000 * 119.99524 * 0.02562 * 8 7 5 35 35 H 0.97000 * 119.99713 * 0.02562 * 11 9 8 36 36 H 1.09006 * 109.46878 * 299.99578 * 12 11 9 37 37 H 1.09000 * 109.47156 * 59.99316 * 12 11 9 38 38 H 1.09006 * 109.46648 * 299.99477 * 13 12 11 39 39 H 1.08995 * 109.47519 * 59.99839 * 13 12 11 40 40 H 0.96998 * 119.99959 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.00065 * 359.97438 * 23 22 3 42 42 H 1.08003 * 120.00294 * 180.27581 * 24 23 22 43 43 H 1.08002 * 120.00308 * 179.83901 * 25 24 23 44 44 H 1.08007 * 119.99663 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00220 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9850 -0.8343 5 6 1.6568 2.1108 1.2951 6 8 1.6250 1.4680 2.3230 7 7 1.3491 3.4229 1.3112 8 7 1.0940 4.0679 2.5285 9 6 0.7869 5.3801 2.5444 10 8 0.5660 5.9398 3.6009 11 7 0.7246 6.0718 1.3894 12 6 0.3913 7.4982 1.4069 13 6 0.3872 8.0385 -0.0245 14 6 0.0450 9.5060 -0.0065 15 1 -0.1505 10.0035 0.9321 16 6 -0.0186 10.2137 -1.1880 17 7 0.2189 9.6079 -2.3310 18 14 -0.4436 12.0326 -1.1658 19 1 -0.6649 12.4721 0.2353 20 1 0.6754 12.8096 -1.7569 21 1 -1.6784 12.2622 -1.9580 22 6 3.5403 1.4449 -0.1418 23 6 4.3253 0.8181 0.8079 24 6 5.7012 0.8166 0.6755 25 6 6.2928 1.4495 -0.4017 26 6 5.5080 2.0808 -1.3486 27 6 4.1318 2.0786 -1.2186 28 1 -0.3634 0.6070 -0.8293 29 1 -0.3633 -1.0217 -0.1111 30 1 -0.3634 0.4146 0.9402 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3044 3.9208 0.4798 34 1 1.1392 3.5701 3.3598 35 1 0.9005 5.6251 0.5466 36 1 -0.5954 7.6354 1.8494 37 1 1.1324 8.0373 1.9971 38 1 1.3737 7.9013 -0.4675 39 1 -0.3541 7.4994 -0.6143 40 1 0.1745 10.1058 -3.1622 41 1 3.8633 0.3271 1.6516 42 1 6.3143 0.3231 1.4151 43 1 7.3679 1.4506 -0.5037 44 1 5.9701 2.5757 -2.1900 45 1 3.5187 2.5721 -1.9581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273573258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:20 Heat of formation + Delta-G solvation = -44.687850 kcal Electronic energy + Delta-G solvation = -26172.558487 eV Core-core repulsion = 22382.849134 eV Total energy + Delta-G solvation = -3789.709353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88719 -40.91945 -39.66887 -37.00508 -36.70580 -35.81982 -34.76773 -32.48381 -31.90327 -31.75068 -31.14610 -27.85939 -26.74469 -23.92720 -23.57585 -23.37891 -22.89677 -22.14509 -21.25078 -20.02896 -18.96643 -18.43863 -17.89049 -17.41135 -17.01690 -16.52353 -16.44831 -16.41239 -15.80240 -15.74778 -15.52050 -15.25396 -15.08038 -14.59267 -14.39466 -14.27891 -14.22102 -13.68862 -13.40552 -13.19893 -12.98346 -12.80339 -12.57334 -12.51775 -12.33307 -12.22964 -11.99169 -11.92942 -11.82524 -11.75419 -11.57356 -11.32021 -11.11077 -10.59139 -10.24862 -9.81440 -9.66875 -9.42910 -8.22047 -6.30929 0.31505 0.50738 0.76941 1.33224 1.42749 1.44991 1.56828 1.95477 1.96398 2.44362 2.82774 3.13587 3.30397 3.60177 3.79543 3.90222 4.10416 4.18047 4.24038 4.31373 4.42668 4.46795 4.52220 4.55486 4.66852 4.72973 4.84349 4.87133 5.06350 5.11099 5.16843 5.17340 5.23941 5.27585 5.37239 5.43264 5.57142 5.58334 5.61558 5.63905 5.64500 5.81661 6.09865 6.17563 6.21288 6.57940 6.81836 7.13706 7.32974 7.38308 8.89759 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.002789 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.598749 B =10036.391094 C =10943.291571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 C -0.048 4.048 4 H 0.132 0.868 5 C 0.527 3.473 6 O -0.560 6.560 7 N -0.518 5.518 8 N -0.531 5.531 9 C 0.711 3.289 10 O -0.617 6.617 11 N -0.725 5.725 12 C 0.156 3.844 13 C 0.024 3.976 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.011 3.989 17 N -0.923 5.923 18 Si 0.960 3.040 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.092 4.092 23 C -0.120 4.120 24 C -0.132 4.132 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.112 4.112 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.432 0.568 34 H 0.439 0.561 35 H 0.403 0.597 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.265 0.735 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.565 -21.856 -2.049 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.138 4.138 3 C -0.070 4.070 4 H 0.150 0.850 5 C 0.314 3.686 6 O -0.436 6.436 7 N -0.270 5.270 8 N -0.286 5.286 9 C 0.410 3.590 10 O -0.495 6.495 11 N -0.381 5.381 12 C 0.032 3.968 13 C -0.014 4.014 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.092 4.092 23 C -0.138 4.138 24 C -0.150 4.150 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.130 4.130 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.276 0.724 34 H 0.285 0.715 35 H 0.240 0.760 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.366 -21.714 -0.843 23.285 hybrid contribution -0.122 0.809 -0.247 0.855 sum 8.243 -20.904 -1.090 22.497 Atomic orbital electron populations 1.21848 0.95012 1.03016 1.01572 1.21452 0.96250 0.92368 1.03681 1.20371 0.93461 0.98941 0.94277 0.85035 1.21306 0.75455 0.79330 0.92467 1.90701 1.53494 1.63693 1.35753 1.45172 1.72050 1.09088 1.00717 1.44394 1.76096 1.06121 1.01982 1.15801 0.78360 0.80119 0.84719 1.90973 1.59670 1.67343 1.31503 1.45203 1.74334 1.11525 1.07049 1.21234 0.99049 0.77203 0.99297 1.19145 0.96768 0.95210 0.90279 1.21467 1.48009 0.95530 0.93297 0.92406 1.25777 0.94925 1.02997 0.95141 1.70038 1.50021 1.37988 0.98202 0.85465 0.77929 0.79682 0.78380 1.19180 1.20351 1.20346 1.19433 0.92959 1.00313 0.96531 1.21208 0.94424 0.99407 0.98798 1.21383 0.94665 1.00072 0.98843 1.21517 1.01116 0.97188 0.94313 1.21492 0.93911 0.99309 0.99856 1.21399 0.95644 0.98346 0.97582 0.91081 0.91242 0.94556 0.88724 0.91819 0.72424 0.71535 0.76050 0.93212 0.93285 0.96847 0.96788 0.92570 0.86569 0.84902 0.84261 0.83995 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.63 71.98 0.69 -1.50 16 2 C -0.10 -1.39 4.89 30.59 0.15 -1.24 16 3 C -0.05 -0.70 2.37 -12.29 -0.03 -0.73 16 4 H 0.13 1.16 7.83 -2.39 -0.02 1.14 16 5 C 0.53 11.10 5.77 87.66 0.51 11.60 16 6 O -0.56 -15.35 15.29 -3.02 -0.05 -15.40 16 7 N -0.52 -10.89 6.26 -173.54 -1.09 -11.98 16 8 N -0.53 -14.56 6.26 -184.75 -1.16 -15.72 16 9 C 0.71 24.29 8.68 179.06 1.55 25.84 16 10 O -0.62 -26.28 17.18 -3.99 -0.07 -26.35 16 11 N -0.72 -23.73 5.52 -478.54 -2.64 -26.37 16 12 C 0.16 6.37 5.61 86.38 0.48 6.85 16 13 C 0.02 1.11 5.09 29.85 0.15 1.26 16 14 C -0.54 -29.18 9.11 25.60 0.23 -28.94 16 15 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 16 C 0.01 0.58 5.46 84.65 0.46 1.04 16 17 N -0.92 -51.66 13.29 21.45 0.28 -51.38 16 18 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.09 -1.50 4.77 -19.87 -0.09 -1.59 16 23 C -0.12 -2.24 8.86 22.27 0.20 -2.05 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 25 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 27 C -0.11 -1.60 9.67 22.27 0.22 -1.38 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.67 7.44 -2.39 -0.02 0.65 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.11 7.12 -2.39 -0.02 1.09 16 33 H 0.43 7.06 6.67 -213.31 -1.42 5.64 16 34 H 0.44 12.27 8.11 -213.32 -1.73 10.54 16 35 H 0.40 10.64 6.39 -92.71 -0.59 10.05 16 36 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.12 2.38 7.19 -2.91 -0.02 2.36 16 42 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 44 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.15 1.43 7.95 -2.91 -0.02 1.40 16 Total: -1.00 -70.11 380.63 -0.21 -70.33 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -2.72 Total: 28.49 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.19 Total: 4.00 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.60 Total: -105.45 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.11 Total: -41.75 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -70.11 -0.21 -70.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273573258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.639 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds