Wall clock time and date at job start Tue Mar 31 2020 13:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31511 * 120.00035 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99998 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46865 * 89.99417 * 9 7 5 11 11 H 1.48498 * 109.47233 * 209.99802 * 9 7 5 12 12 H 1.48508 * 109.47028 * 329.99943 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 C 1.50700 * 110.02041 * 59.29480 * 16 14 13 18 18 C 1.38215 * 120.00895 * 0.70304 * 17 16 14 19 19 C 1.38222 * 120.02006 * 179.97438 * 18 17 16 20 20 C 1.38268 * 120.05606 * 0.02562 * 19 18 17 21 21 C 1.38175 * 120.02345 * 359.97438 * 20 19 18 22 22 C 1.38440 * 120.01186 * 180.42298 * 17 16 14 23 23 F 1.35101 * 120.02634 * 0.02562 * 22 17 16 24 24 C 1.53882 * 110.03111 * 297.90086 * 16 14 13 25 25 C 1.54371 * 106.54674 * 240.73241 * 24 16 14 26 26 C 1.54896 * 104.21613 * 23.57417 * 25 24 16 27 27 C 1.54272 * 110.03012 * 180.68746 * 16 14 13 28 28 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 30 30 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 31 31 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 32 32 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 33 33 H 0.97000 * 120.00229 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 35 35 H 1.07995 * 119.99365 * 359.95227 * 18 17 16 36 36 H 1.08007 * 119.97520 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.98926 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.01434 * 179.97438 * 21 20 19 39 39 H 1.08996 * 110.03059 * 0.02562 * 24 16 14 40 40 H 1.09002 * 110.02576 * 121.43622 * 24 16 14 41 41 H 1.09007 * 110.46329 * 264.90286 * 25 24 16 42 42 H 1.08997 * 110.49273 * 142.27019 * 25 24 16 43 43 H 1.09004 * 110.75645 * 203.75851 * 26 25 24 44 44 H 1.09000 * 110.75179 * 80.38740 * 26 25 24 45 45 H 1.08997 * 110.48352 * 214.35030 * 27 16 14 46 46 H 1.08994 * 110.48370 * 336.86379 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 6 0.0925 2.3647 -3.7909 18 6 0.4522 1.0512 -3.5550 19 6 0.4991 0.1486 -4.6008 20 6 0.1871 0.5585 -5.8839 21 6 -0.1727 1.8711 -6.1221 22 6 -0.2258 2.7750 -5.0742 23 9 -0.5824 4.0575 -5.3051 24 6 0.9819 4.5328 -2.9328 25 6 0.0985 5.7983 -2.9652 26 6 -1.1470 5.4143 -2.1283 27 6 -1.3805 3.9345 -2.5221 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8771 0.4817 2.1127 34 1 2.2719 2.1232 -1.9977 35 1 0.6969 0.7300 -2.5534 36 1 0.7806 -0.8776 -4.4157 37 1 0.2245 -0.1476 -6.7003 38 1 -0.4160 2.1912 -7.1244 39 1 1.7255 4.6159 -2.1402 40 1 1.4753 4.3963 -3.8951 41 1 -0.1887 6.0365 -3.9894 42 1 0.6202 6.6396 -2.5088 43 1 -2.0038 6.0279 -2.4068 44 1 -0.9380 5.5019 -1.0621 45 1 -1.9064 3.8717 -3.4747 46 1 -1.9388 3.4141 -1.7440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273845905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:18 Heat of formation + Delta-G solvation = -77.484715 kcal Electronic energy + Delta-G solvation = -28810.826400 eV Core-core repulsion = 24999.774907 eV Total energy + Delta-G solvation = -3811.051493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.86808 -41.98566 -39.61199 -38.41446 -36.91983 -34.51203 -33.60959 -32.57340 -31.43169 -29.80478 -29.44571 -28.72622 -24.97381 -24.01960 -23.56373 -22.99701 -21.68079 -21.58664 -20.61549 -19.09131 -18.52520 -17.97989 -17.53336 -17.18452 -16.81431 -16.59045 -16.22995 -16.14120 -15.78660 -15.46318 -15.15900 -14.86546 -14.57918 -14.32451 -14.06784 -13.97029 -13.72964 -13.64327 -13.47938 -13.19859 -12.99374 -12.80750 -12.58518 -12.41550 -12.28866 -12.25129 -12.08190 -11.97576 -11.87651 -11.70058 -11.47098 -11.39354 -11.24536 -10.87002 -10.58367 -9.91742 -9.72862 -9.56957 -8.38746 -6.44176 0.18663 0.26020 1.25116 1.33984 1.43297 1.68745 2.24595 2.36124 2.62962 2.97002 3.30128 3.36421 3.49198 3.62060 3.87592 3.96770 4.12618 4.20932 4.23746 4.30690 4.38038 4.40585 4.43195 4.46096 4.48455 4.62679 4.73765 4.80718 4.88068 4.88376 4.98559 5.00220 5.07225 5.10599 5.12746 5.16016 5.18950 5.23031 5.28582 5.37973 5.40246 5.43683 5.50113 5.54562 5.63704 5.96598 6.12787 6.57304 6.82243 7.18067 7.39686 8.76490 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.004905 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.336686 B = 5707.255976 C = 6398.849995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.250 3.750 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.054 0.946 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.258 1.258 11 H -0.295 1.295 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.522 3.478 15 O -0.570 6.570 16 C -0.035 4.035 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.086 4.086 21 C -0.150 4.150 22 C 0.096 3.904 23 F -0.135 7.135 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.101 4.101 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.270 0.730 34 H 0.402 0.598 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 2.237 -16.601 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.039 0.961 5 C -0.570 4.570 6 H 0.072 0.928 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.183 1.183 11 H -0.222 1.222 12 H -0.186 1.186 13 N -0.346 5.346 14 C 0.309 3.691 15 O -0.449 6.449 16 C -0.038 4.038 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.169 4.169 22 C 0.077 3.923 23 F -0.114 7.114 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.157 4.157 27 C -0.139 4.139 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.178 0.822 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.609 2.209 -15.825 20.988 hybrid contribution 0.529 -0.175 0.950 1.101 sum -13.080 2.034 -14.875 19.912 Atomic orbital electron populations 1.21830 0.95276 1.00737 1.01654 1.22207 0.95713 0.98328 1.01245 1.18807 0.93243 0.89747 0.83674 0.96123 1.21251 0.90282 1.38537 1.06882 0.92795 1.25511 0.95668 0.95862 0.99723 1.69973 1.10250 1.46132 1.30806 0.86066 0.79273 0.80059 0.78401 1.18341 1.22199 1.18640 1.46164 1.15773 1.55757 1.16912 1.20537 0.81544 0.77565 0.89426 1.90628 1.52141 1.60512 1.41663 1.20355 0.99068 0.94827 0.89597 1.19616 1.04126 0.95172 0.92722 1.21625 0.98628 0.92425 1.01387 1.21489 0.99609 1.00564 0.92678 1.21412 0.96137 0.95370 0.97432 1.21453 1.02691 0.93592 0.99120 1.17521 1.01875 0.79654 0.93229 1.91463 1.89310 1.35495 1.95099 1.22304 0.97197 0.93205 1.02192 1.22368 0.95354 0.96196 1.01226 1.22453 0.98861 0.95038 0.99301 1.22368 0.92925 0.96457 1.02143 0.92037 0.94505 0.92598 0.90984 0.93714 0.92101 0.76298 0.85356 0.83723 0.81682 0.82164 0.92408 0.90131 0.89681 0.90711 0.89240 0.93002 0.89921 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.41 71.98 0.61 -4.62 16 2 C -0.14 -5.76 4.71 30.59 0.14 -5.61 16 3 C 0.25 11.70 1.83 44.25 0.08 11.78 16 4 H 0.02 1.10 6.63 -2.39 -0.02 1.08 16 5 C -0.53 -28.83 9.31 25.60 0.24 -28.60 16 6 H 0.05 3.14 7.98 -2.91 -0.02 3.12 16 7 C 0.03 1.81 5.45 84.66 0.46 2.27 16 8 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 9 Si 0.93 44.65 24.41 68.60 1.67 46.33 16 10 H -0.26 -11.51 6.83 99.48 0.68 -10.83 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.26 -12.48 6.53 99.48 0.65 -11.83 16 13 N -0.70 -27.50 3.19 -446.09 -1.42 -28.93 16 14 C 0.52 19.54 3.94 87.66 0.35 19.89 16 15 O -0.57 -24.73 12.54 -3.04 -0.04 -24.77 16 16 C -0.04 -1.05 0.53 -52.95 -0.03 -1.07 16 17 C -0.12 -3.07 4.61 -19.82 -0.09 -3.16 16 18 C -0.12 -3.29 8.46 22.26 0.19 -3.10 16 19 C -0.13 -2.59 10.04 22.27 0.22 -2.37 16 20 C -0.09 -1.37 10.04 22.26 0.22 -1.15 16 21 C -0.15 -2.60 10.03 22.31 0.22 -2.38 16 22 C 0.10 2.18 6.21 22.38 0.14 2.32 16 23 F -0.14 -3.03 13.27 44.97 0.60 -2.43 16 24 C -0.11 -3.02 5.32 31.36 0.17 -2.85 16 25 C -0.11 -2.61 6.46 31.71 0.20 -2.40 16 26 C -0.12 -2.94 6.91 31.89 0.22 -2.72 16 27 C -0.10 -2.81 5.33 31.67 0.17 -2.64 16 28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.04 1.51 7.85 -2.39 -0.02 1.49 16 30 H 0.06 2.08 4.39 -2.39 -0.01 2.07 16 31 H 0.07 2.82 8.13 -2.39 -0.02 2.80 16 32 H 0.04 1.98 3.21 -2.39 -0.01 1.98 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.40 14.84 7.86 -92.71 -0.73 14.11 16 35 H 0.13 4.01 3.59 -2.91 -0.01 4.00 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.06 1.78 7.60 -2.39 -0.02 1.76 16 40 H 0.08 2.02 7.05 -2.39 -0.02 2.00 16 41 H 0.08 1.71 7.23 -2.38 -0.02 1.69 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 2.06 6.33 -2.39 -0.02 2.04 16 46 H 0.07 2.12 6.83 -2.39 -0.02 2.10 16 Total: -1.00 -65.31 345.16 4.83 -60.48 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.20 Total: 31.24 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 3.52 Total: -26.42 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.12 Total: -84.42 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.04 Total: -24.77 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.60 Total: -2.43 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.33 kcal Total: -65.31 4.83 -60.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273845905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.005 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds