Wall clock time and date at job start Tue Mar 31 2020 13:37:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52996 * 109.47384 * 2 1
4 4 H 1.09003 * 109.47257 * 304.99864 * 3 2 1
5 5 C 1.50699 * 109.47291 * 185.00005 * 3 2 1
6 6 H 1.08000 * 120.00172 * 239.99648 * 5 3 2
7 7 C 1.37875 * 119.99814 * 60.00283 * 5 3 2
8 8 N 1.31509 * 120.00519 * 359.97438 * 7 5 3
9 9 Si 1.86801 * 119.99806 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.47269 * 60.00127 * 9 7 5
11 11 H 1.48500 * 109.47146 * 179.97438 * 9 7 5
12 12 H 1.48495 * 109.47519 * 300.00159 * 9 7 5
13 13 N 1.46505 * 109.47246 * 64.99916 * 3 2 1
14 14 C 1.29982 * 120.00274 * 233.72575 * 13 3 2
15 15 O 1.35236 * 120.00020 * 172.95656 * 14 13 3
16 16 C 1.48011 * 119.99843 * 352.95408 * 14 13 3
17 17 C 1.39511 * 120.51431 * 316.49540 * 16 14 13
18 18 N 1.31684 * 120.73901 * 180.02562 * 17 16 14
19 19 C 1.31866 * 121.95414 * 359.68423 * 18 17 16
20 20 C 1.38976 * 120.95504 * 0.58589 * 19 18 17
21 21 N 1.39742 * 120.42637 * 179.72970 * 20 19 18
22 22 C 1.47024 * 110.99618 * 236.03834 * 21 20 19
23 23 C 1.53094 * 109.25464 * 182.34955 * 22 21 20
24 24 O 1.43025 * 109.29350 * 303.22038 * 23 22 21
25 25 C 1.43010 * 113.73809 * 58.64893 * 24 23 22
26 26 C 1.47005 * 110.99955 * 359.71738 * 21 20 19
27 27 C 1.39077 * 119.14870 * 359.45187 * 20 19 18
28 28 H 1.09001 * 109.47382 * 300.00403 * 1 2 3
29 29 H 1.09007 * 109.46991 * 59.99883 * 1 2 3
30 30 H 1.09003 * 109.47672 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47156 * 240.00331 * 2 1 3
32 32 H 1.08993 * 109.47074 * 119.99948 * 2 1 3
33 33 H 0.96994 * 120.00644 * 180.02562 * 8 7 5
34 34 H 0.96703 * 114.00362 * 359.97438 * 15 14 13
35 35 H 1.07997 * 119.62944 * 0.02562 * 17 16 14
36 36 H 1.08003 * 119.52619 * 180.28951 * 19 18 17
37 37 H 1.09004 * 109.46967 * 62.43850 * 22 21 20
38 38 H 1.08996 * 109.54582 * 302.30661 * 22 21 20
39 39 H 1.09002 * 109.50650 * 183.26536 * 23 22 21
40 40 H 1.09004 * 109.50542 * 63.17273 * 23 22 21
41 41 H 1.08997 * 109.50832 * 61.26493 * 25 24 23
42 42 H 1.09000 * 109.50632 * 181.35597 * 25 24 23
43 43 H 1.09009 * 109.50542 * 57.67708 * 26 21 20
44 44 H 1.08999 * 109.54591 * 297.56940 * 26 21 20
45 45 H 1.07998 * 120.89107 * 180.23371 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4442 -0.1238
6 1 4.1472 1.8888 0.6523
7 6 4.1432 0.8783 -1.2280
8 7 3.4062 0.3366 -2.1729
9 14 6.0049 0.8812 -1.3818
10 1 6.5975 0.1471 -0.2350
11 1 6.3977 0.2167 -2.6504
12 1 6.4995 2.2813 -1.3821
13 7 1.6524 2.0975 1.2518
14 6 1.0029 3.2230 1.2225
15 8 0.5210 3.7557 2.3683
16 6 0.7908 3.9216 -0.0650
17 6 1.8295 4.0341 -0.9895
18 7 1.6459 4.6551 -2.1361
19 6 0.4847 5.1878 -2.4631
20 6 -0.6000 5.1248 -1.5966
21 7 -1.8239 5.6980 -1.9520
22 6 -2.2625 6.6722 -0.9420
23 6 -3.6311 7.2309 -1.3403
24 8 -3.5447 7.8059 -2.6470
25 6 -3.1214 6.8839 -3.6549
26 6 -1.7471 6.3225 -3.2806
27 6 -0.4535 4.4791 -0.3736
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8932 -0.5138 0.8899
33 1 3.8292 -0.0618 -2.9495
34 1 0.7084 3.2281 3.1567
35 1 2.7951 3.6071 -0.7622
36 1 0.3764 5.6842 -3.4161
37 1 -1.5398 7.4862 -0.8845
38 1 -2.3379 6.1822 0.0287
39 1 -3.9341 7.9958 -0.6254
40 1 -4.3657 6.4255 -1.3450
41 1 -3.8405 6.0680 -3.7271
42 1 -3.0564 7.3977 -4.6141
43 1 -1.4458 5.5768 -4.0165
44 1 -1.0164 7.1311 -3.2618
45 1 -1.2788 4.4103 0.3195
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330883225.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:37:03
Heat of formation + Delta-G solvation = -15.503201 kcal
Electronic energy + Delta-G solvation = -27588.164035 eV
Core-core repulsion = 23799.720224 eV
Total energy + Delta-G solvation = -3788.443811 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.81052 -39.33431 -37.90595 -36.15181 -35.44215 -32.82350 -31.99275 -31.42291
-30.99706 -29.75432 -27.14950 -26.74782 -25.10668 -23.66410 -22.90081 -22.46223
-21.29120 -20.39033 -19.40125 -17.70175 -16.76323 -16.58991 -16.40900 -16.19828
-15.90194 -15.61871 -15.20984 -15.10858 -14.58080 -14.44298 -14.34831 -13.76053
-13.50691 -13.14718 -12.99152 -12.85126 -12.53012 -12.34997 -12.03958 -11.98868
-11.74271 -11.52662 -11.21823 -11.03008 -10.97515 -10.84610 -10.48743 -10.31034
-9.96543 -9.92792 -9.80476 -9.74415 -9.32882 -8.97402 -8.72687 -8.24608
-8.05328 -7.76497 -6.11019 -4.19783 1.17412 1.52349 3.07620 3.28949
3.33479 3.36127 3.41845 3.58377 3.92615 4.14463 4.35883 4.52114
4.63920 4.75038 4.81492 4.86476 4.98661 5.06458 5.14878 5.23201
5.30822 5.31433 5.34792 5.46213 5.48109 5.59253 5.65722 5.76520
6.05880 6.14407 6.25610 6.29936 6.41684 6.46364 6.65497 6.76293
6.82323 6.90117 7.01349 7.17058 7.27812 7.48184 7.72706 7.83872
8.05344 8.24860 8.34134 8.73344 8.95494 9.47070 10.93210
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.016609 B = 0.003753 C = 0.003442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1685.473049 B = 7459.642491 C = 8133.995212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.107 4.107
3 C 0.208 3.792
4 H 0.026 0.974
5 C -0.518 4.518
6 H 0.061 0.939
7 C 0.069 3.931
8 N -0.881 5.881
9 Si 0.897 3.103
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.275 1.275
13 N -0.540 5.540
14 C 0.336 3.664
15 O -0.485 6.485
16 C -0.098 4.098
17 C 0.135 3.865
18 N -0.461 5.461
19 C 0.061 3.939
20 C 0.035 3.965
21 N -0.480 5.480
22 C 0.018 3.982
23 C 0.064 3.936
24 O -0.385 6.385
25 C 0.064 3.936
26 C 0.010 3.990
27 C -0.062 4.062
28 H 0.036 0.964
29 H 0.038 0.962
30 H 0.035 0.965
31 H 0.099 0.901
32 H 0.041 0.959
33 H 0.265 0.735
34 H 0.399 0.601
35 H 0.185 0.815
36 H 0.153 0.847
37 H 0.053 0.947
38 H 0.094 0.906
39 H 0.102 0.898
40 H 0.062 0.938
41 H 0.062 0.938
42 H 0.102 0.898
43 H 0.096 0.904
44 H 0.057 0.943
45 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.859 11.716 0.320 17.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.145 4.145
3 C 0.100 3.900
4 H 0.044 0.956
5 C -0.556 4.556
6 H 0.079 0.921
7 C -0.135 4.135
8 N -0.518 5.518
9 Si 0.725 3.275
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.200 1.200
13 N -0.270 5.270
14 C 0.106 3.894
15 O -0.281 6.281
16 C -0.104 4.104
17 C -0.024 4.024
18 N -0.168 5.168
19 C -0.099 4.099
20 C -0.064 4.064
21 N -0.197 5.197
22 C -0.108 4.108
23 C -0.014 4.014
24 O -0.304 6.304
25 C -0.013 4.013
26 C -0.117 4.117
27 C -0.092 4.092
28 H 0.055 0.945
29 H 0.057 0.943
30 H 0.054 0.946
31 H 0.118 0.882
32 H 0.060 0.940
33 H 0.075 0.925
34 H 0.253 0.747
35 H 0.202 0.798
36 H 0.170 0.830
37 H 0.071 0.929
38 H 0.112 0.888
39 H 0.120 0.880
40 H 0.080 0.920
41 H 0.080 0.920
42 H 0.120 0.880
43 H 0.114 0.886
44 H 0.075 0.925
45 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -12.474 11.366 -0.300 16.878
hybrid contribution 0.853 -0.085 0.301 0.908
sum -11.621 11.281 0.001 16.196
Atomic orbital electron populations
1.21810 0.99387 0.99315 0.99752 1.21565 0.91515 0.98691 1.02770
1.19580 0.95714 0.91271 0.83392 0.95623 1.21003 0.90102 1.39014
1.05519 0.92073 1.24917 0.98489 0.94672 0.95378 1.69854 1.35245
1.37410 1.09306 0.86559 0.85072 0.78512 0.77375 1.20163 1.21132
1.19995 1.72010 1.10764 1.08404 1.35801 1.21101 0.92982 0.91115
0.84157 1.84820 1.75145 1.51826 1.16351 1.19936 0.95026 1.00245
0.95146 1.23629 1.00097 0.91430 0.87258 1.67748 1.23022 1.08174
1.17849 1.23062 0.87775 0.99066 0.99992 1.19722 0.89497 1.01002
0.96166 1.59357 1.25808 1.31352 1.03200 1.22970 0.97672 0.94266
0.95904 1.22706 0.95347 0.98559 0.84739 1.87992 1.88187 1.37098
1.17100 1.22702 0.93821 0.93188 0.91578 1.22995 0.98806 0.98985
0.90961 1.21245 0.97063 0.95454 0.95420 0.94471 0.94282 0.94579
0.88238 0.94029 0.92539 0.74720 0.79839 0.83014 0.92899 0.88799
0.88045 0.91982 0.91986 0.87966 0.88562 0.92512 0.84569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.03 9.80 37.15 0.36 -2.67 16
2 C -0.11 -2.59 5.45 -26.74 -0.15 -2.73 16
3 C 0.21 5.12 1.45 -69.08 -0.10 5.02 16
4 H 0.03 0.69 4.78 -51.93 -0.25 0.44 16
5 C -0.52 -13.82 7.24 -34.44 -0.25 -14.07 16
6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16
8 N -0.88 -24.26 11.29 55.43 0.63 -23.63 16
9 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16
10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
12 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16
13 N -0.54 -11.87 9.52 -53.87 -0.51 -12.38 16
14 C 0.34 6.49 7.71 -14.33 -0.11 6.38 16
15 O -0.48 -7.62 13.50 -17.40 -0.23 -7.86 16
16 C -0.10 -1.87 4.92 -104.84 -0.52 -2.39 16
17 C 0.14 2.84 8.57 -17.14 -0.15 2.69 16
18 N -0.46 -9.14 10.34 -12.77 -0.13 -9.27 16
19 C 0.06 0.99 10.00 -17.26 -0.17 0.82 16
20 C 0.03 0.52 5.64 -83.67 -0.47 0.05 16
21 N -0.48 -5.86 4.78 -170.71 -0.82 -6.67 16
22 C 0.02 0.18 5.41 -3.71 -0.02 0.16 16
23 C 0.06 0.56 7.01 37.21 0.26 0.82 16
24 O -0.39 -3.97 10.83 -35.23 -0.38 -4.35 16
25 C 0.06 0.56 7.01 37.21 0.26 0.82 16
26 C 0.01 0.10 4.34 -3.71 -0.02 0.08 16
27 C -0.06 -1.02 9.02 -38.69 -0.35 -1.36 16
28 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16
29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16
32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16
33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
34 H 0.40 4.89 8.97 45.56 0.41 5.30 16
35 H 0.18 4.34 5.62 -52.49 -0.29 4.05 16
36 H 0.15 2.02 5.81 -52.48 -0.31 1.71 16
37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.09 0.91 6.92 -51.93 -0.36 0.55 16
39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
43 H 0.10 0.93 7.23 -51.92 -0.38 0.56 16
44 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16
45 H 0.14 1.97 7.28 -52.49 -0.38 1.59 16
LS Contribution 359.09 15.07 5.41 5.41
Total: -1.00 -30.44 359.09 -8.15 -38.60
By element:
Atomic # 1 Polarization: 14.46 SS G_CDS: -5.59 Total: 8.87 kcal
Atomic # 6 Polarization: -3.12 SS G_CDS: -1.51 Total: -4.63 kcal
Atomic # 7 Polarization: -51.13 SS G_CDS: -0.83 Total: -51.96 kcal
Atomic # 8 Polarization: -11.59 SS G_CDS: -0.62 Total: -12.21 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -30.44 -8.15 -38.60 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330883225.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.093 kcal
(2) G-P(sol) polarization free energy of solvation -30.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds