Wall clock time and date at job start Tue Mar 31 2020 13:37:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52996 * 109.47384 * 2 1
4 4 H 1.09003 * 109.47257 * 304.99864 * 3 2 1
5 5 C 1.50699 * 109.47291 * 185.00005 * 3 2 1
6 6 H 1.08000 * 120.00172 * 239.99648 * 5 3 2
7 7 C 1.37875 * 119.99814 * 60.00283 * 5 3 2
8 8 N 1.31509 * 120.00519 * 359.97438 * 7 5 3
9 9 Si 1.86801 * 119.99806 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.47269 * 60.00127 * 9 7 5
11 11 H 1.48500 * 109.47146 * 179.97438 * 9 7 5
12 12 H 1.48495 * 109.47519 * 300.00159 * 9 7 5
13 13 N 1.46505 * 109.47246 * 64.99916 * 3 2 1
14 14 C 1.29982 * 120.00274 * 233.72575 * 13 3 2
15 15 O 1.35236 * 120.00020 * 172.95656 * 14 13 3
16 16 C 1.48011 * 119.99843 * 352.95408 * 14 13 3
17 17 C 1.39511 * 120.51431 * 316.49540 * 16 14 13
18 18 N 1.31684 * 120.73901 * 180.02562 * 17 16 14
19 19 C 1.31866 * 121.95414 * 359.68423 * 18 17 16
20 20 C 1.38976 * 120.95504 * 0.58589 * 19 18 17
21 21 N 1.39742 * 120.42637 * 179.72970 * 20 19 18
22 22 C 1.47024 * 110.99618 * 236.03834 * 21 20 19
23 23 C 1.53094 * 109.25464 * 182.34955 * 22 21 20
24 24 O 1.43025 * 109.29350 * 303.22038 * 23 22 21
25 25 C 1.43010 * 113.73809 * 58.64893 * 24 23 22
26 26 C 1.47005 * 110.99955 * 359.71738 * 21 20 19
27 27 C 1.39077 * 119.14870 * 359.45187 * 20 19 18
28 28 H 1.09001 * 109.47382 * 300.00403 * 1 2 3
29 29 H 1.09007 * 109.46991 * 59.99883 * 1 2 3
30 30 H 1.09003 * 109.47672 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47156 * 240.00331 * 2 1 3
32 32 H 1.08993 * 109.47074 * 119.99948 * 2 1 3
33 33 H 0.96994 * 120.00644 * 180.02562 * 8 7 5
34 34 H 0.96703 * 114.00362 * 359.97438 * 15 14 13
35 35 H 1.07997 * 119.62944 * 0.02562 * 17 16 14
36 36 H 1.08003 * 119.52619 * 180.28951 * 19 18 17
37 37 H 1.09004 * 109.46967 * 62.43850 * 22 21 20
38 38 H 1.08996 * 109.54582 * 302.30661 * 22 21 20
39 39 H 1.09002 * 109.50650 * 183.26536 * 23 22 21
40 40 H 1.09004 * 109.50542 * 63.17273 * 23 22 21
41 41 H 1.08997 * 109.50832 * 61.26493 * 25 24 23
42 42 H 1.09000 * 109.50632 * 181.35597 * 25 24 23
43 43 H 1.09009 * 109.50542 * 57.67708 * 26 21 20
44 44 H 1.08999 * 109.54591 * 297.56940 * 26 21 20
45 45 H 1.07998 * 120.89107 * 180.23371 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4442 -0.1238
6 1 4.1472 1.8888 0.6523
7 6 4.1432 0.8783 -1.2280
8 7 3.4062 0.3366 -2.1729
9 14 6.0049 0.8812 -1.3818
10 1 6.5975 0.1471 -0.2350
11 1 6.3977 0.2167 -2.6504
12 1 6.4995 2.2813 -1.3821
13 7 1.6524 2.0975 1.2518
14 6 1.0029 3.2230 1.2225
15 8 0.5210 3.7557 2.3683
16 6 0.7908 3.9216 -0.0650
17 6 1.8295 4.0341 -0.9895
18 7 1.6459 4.6551 -2.1361
19 6 0.4847 5.1878 -2.4631
20 6 -0.6000 5.1248 -1.5966
21 7 -1.8239 5.6980 -1.9520
22 6 -2.2625 6.6722 -0.9420
23 6 -3.6311 7.2309 -1.3403
24 8 -3.5447 7.8059 -2.6470
25 6 -3.1214 6.8839 -3.6549
26 6 -1.7471 6.3225 -3.2806
27 6 -0.4535 4.4791 -0.3736
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8932 -0.5138 0.8899
33 1 3.8292 -0.0618 -2.9495
34 1 0.7084 3.2281 3.1567
35 1 2.7951 3.6071 -0.7622
36 1 0.3764 5.6842 -3.4161
37 1 -1.5398 7.4862 -0.8845
38 1 -2.3379 6.1822 0.0287
39 1 -3.9341 7.9958 -0.6254
40 1 -4.3657 6.4255 -1.3450
41 1 -3.8405 6.0680 -3.7271
42 1 -3.0564 7.3977 -4.6141
43 1 -1.4458 5.5768 -4.0165
44 1 -1.0164 7.1311 -3.2618
45 1 -1.2788 4.4103 0.3195
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000330883225.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:37:02
Heat of formation + Delta-G solvation = -40.945996 kcal
Electronic energy + Delta-G solvation = -27589.267318 eV
Core-core repulsion = 23799.720224 eV
Total energy + Delta-G solvation = -3789.547094 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.99791 -40.42989 -39.25544 -37.45187 -36.86106 -34.51112 -33.54392 -32.63940
-32.20632 -31.05921 -28.96716 -27.80638 -26.18133 -25.27376 -24.41812 -23.66121
-22.53567 -21.64616 -20.92562 -18.89135 -18.47396 -18.09927 -17.69966 -17.49614
-16.90696 -16.80794 -16.38091 -16.13981 -15.93435 -15.59253 -15.44748 -15.16907
-15.09385 -14.70210 -14.45749 -14.23588 -13.99464 -13.69033 -13.48886 -13.23333
-13.08845 -12.85727 -12.72397 -12.55252 -12.31443 -12.17924 -11.83165 -11.78688
-11.65022 -11.58634 -11.50172 -10.80487 -10.74532 -10.62934 -10.40177 -10.00165
-9.66315 -9.02883 -8.13921 -6.28175 -0.21990 0.17866 1.39926 1.41188
1.47676 1.58791 2.32416 2.41695 2.59183 2.74091 2.91715 3.11713
3.50307 3.65133 3.75052 3.83616 3.87106 3.93406 3.98959 4.13742
4.21950 4.31551 4.37542 4.44775 4.51967 4.54622 4.65738 4.70002
4.76774 4.80509 4.85957 4.86522 4.96150 5.06286 5.12817 5.18864
5.36725 5.42217 5.55642 5.70085 5.73135 5.93070 5.95101 6.13168
6.27536 6.49302 6.81094 6.93407 7.22564 7.44173 8.88880
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.016609 B = 0.003753 C = 0.003442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1685.473049 B = 7459.642491 C = 8133.995212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.106 4.106
3 C 0.217 3.783
4 H 0.008 0.992
5 C -0.529 4.529
6 H 0.046 0.954
7 C 0.028 3.972
8 N -0.905 5.905
9 Si 0.951 3.049
10 H -0.272 1.272
11 H -0.280 1.280
12 H -0.273 1.273
13 N -0.569 5.569
14 C 0.358 3.642
15 O -0.469 6.469
16 C -0.113 4.113
17 C 0.110 3.890
18 N -0.486 5.486
19 C 0.057 3.943
20 C 0.055 3.945
21 N -0.482 5.482
22 C 0.016 3.984
23 C 0.065 3.935
24 O -0.400 6.400
25 C 0.066 3.934
26 C 0.004 3.996
27 C -0.059 4.059
28 H 0.046 0.954
29 H 0.030 0.970
30 H 0.057 0.943
31 H 0.072 0.928
32 H 0.031 0.969
33 H 0.264 0.736
34 H 0.416 0.584
35 H 0.148 0.852
36 H 0.181 0.819
37 H 0.049 0.951
38 H 0.101 0.899
39 H 0.123 0.877
40 H 0.067 0.933
41 H 0.065 0.935
42 H 0.124 0.876
43 H 0.101 0.899
44 H 0.059 0.941
45 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.028 13.209 0.449 20.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.145 4.145
3 C 0.109 3.891
4 H 0.025 0.975
5 C -0.567 4.567
6 H 0.065 0.935
7 C -0.173 4.173
8 N -0.543 5.543
9 Si 0.777 3.223
10 H -0.198 1.198
11 H -0.205 1.205
12 H -0.199 1.199
13 N -0.301 5.301
14 C 0.129 3.871
15 O -0.267 6.267
16 C -0.119 4.119
17 C -0.049 4.049
18 N -0.194 5.194
19 C -0.104 4.104
20 C -0.045 4.045
21 N -0.199 5.199
22 C -0.109 4.109
23 C -0.011 4.011
24 O -0.318 6.318
25 C -0.010 4.010
26 C -0.122 4.122
27 C -0.088 4.088
28 H 0.065 0.935
29 H 0.049 0.951
30 H 0.076 0.924
31 H 0.090 0.910
32 H 0.050 0.950
33 H 0.073 0.927
34 H 0.273 0.727
35 H 0.165 0.835
36 H 0.198 0.802
37 H 0.067 0.933
38 H 0.120 0.880
39 H 0.141 0.859
40 H 0.086 0.914
41 H 0.084 0.916
42 H 0.142 0.858
43 H 0.119 0.881
44 H 0.078 0.922
45 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -14.664 12.877 -0.136 19.516
hybrid contribution 1.366 -0.373 0.259 1.440
sum -13.298 12.505 0.123 18.254
Atomic orbital electron populations
1.21639 0.96719 1.00714 0.99710 1.21443 0.93925 0.98292 1.00810
1.19268 0.94335 0.91417 0.84055 0.97485 1.21203 0.91689 1.38616
1.05173 0.93538 1.25555 1.02137 0.94480 0.95134 1.69965 1.36514
1.38186 1.09627 0.85719 0.80748 0.78416 0.77465 1.19775 1.20544
1.19880 1.71942 1.13752 1.10304 1.34096 1.21248 0.90716 0.89902
0.85246 1.84813 1.74196 1.51598 1.16134 1.19894 0.95877 1.01289
0.94862 1.23073 0.99569 0.93579 0.88706 1.67639 1.25166 1.08934
1.17674 1.23541 0.87051 0.98458 1.01316 1.19824 0.90107 0.99508
0.95048 1.59384 1.23448 1.32328 1.04736 1.23088 0.98502 0.93617
0.95703 1.22825 0.94259 0.99383 0.84679 1.87985 1.88160 1.37900
1.17800 1.22808 0.92696 0.93375 0.92170 1.23148 1.00128 0.99125
0.89835 1.21427 0.96381 0.94702 0.96330 0.93531 0.95081 0.92440
0.90985 0.94997 0.92686 0.72653 0.83466 0.80209 0.93288 0.88042
0.85899 0.91435 0.91649 0.85810 0.88113 0.92241 0.82318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.38 9.80 71.98 0.71 -4.68 16
2 C -0.11 -5.26 5.45 30.59 0.17 -5.10 16
3 C 0.22 11.08 1.45 44.24 0.06 11.14 16
4 H 0.01 0.42 4.78 -2.39 -0.01 0.41 16
5 C -0.53 -29.39 7.24 25.60 0.19 -29.20 16
6 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16
7 C 0.03 1.53 5.29 84.66 0.45 1.98 16
8 N -0.90 -51.57 11.29 21.45 0.24 -51.32 16
9 Si 0.95 44.13 29.54 68.60 2.03 46.15 16
10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
12 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16
13 N -0.57 -25.39 9.52 -438.57 -4.18 -29.57 16
14 C 0.36 13.69 7.71 87.56 0.67 14.36 16
15 O -0.47 -13.86 13.50 -85.19 -1.15 -15.01 16
16 C -0.11 -4.34 4.92 -20.00 -0.10 -4.44 16
17 C 0.11 4.78 8.57 85.02 0.73 5.51 16
18 N -0.49 -19.69 10.34 -194.32 -2.01 -21.70 16
19 C 0.06 1.79 10.00 84.86 0.85 2.64 16
20 C 0.05 1.55 5.64 38.26 0.22 1.76 16
21 N -0.48 -10.45 4.78 -693.99 -3.32 -13.76 16
22 C 0.02 0.28 5.41 86.31 0.47 0.75 16
23 C 0.07 0.92 7.01 72.01 0.50 1.43 16
24 O -0.40 -6.96 10.83 -148.98 -1.61 -8.58 16
25 C 0.07 0.95 7.01 72.02 0.50 1.45 16
26 C 0.00 0.08 4.34 86.32 0.37 0.45 16
27 C -0.06 -1.82 9.02 22.85 0.21 -1.62 16
28 H 0.05 1.80 7.75 -2.39 -0.02 1.79 16
29 H 0.03 1.29 8.14 -2.38 -0.02 1.28 16
30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
31 H 0.07 3.96 5.95 -2.38 -0.01 3.94 16
32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16
34 H 0.42 9.32 8.97 -74.06 -0.66 8.66 16
35 H 0.15 7.46 5.62 -2.91 -0.02 7.44 16
36 H 0.18 4.46 5.81 -2.91 -0.02 4.45 16
37 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16
38 H 0.10 1.63 6.92 -2.39 -0.02 1.61 16
39 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16
40 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16
41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
42 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16
43 H 0.10 1.68 7.23 -2.38 -0.02 1.66 16
44 H 0.06 1.04 7.56 -2.39 -0.02 1.02 16
45 H 0.16 4.12 7.28 -2.91 -0.02 4.10 16
Total: -1.00 -67.84 359.09 -3.64 -71.48
By element:
Atomic # 1 Polarization: 25.50 SS G_CDS: 0.36 Total: 25.86 kcal
Atomic # 6 Polarization: -9.55 SS G_CDS: 6.00 Total: -3.55 kcal
Atomic # 7 Polarization: -107.10 SS G_CDS: -9.26 Total: -116.35 kcal
Atomic # 8 Polarization: -20.82 SS G_CDS: -2.76 Total: -23.58 kcal
Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal
Total: -67.84 -3.64 -71.48 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330883225.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.538 kcal
(2) G-P(sol) polarization free energy of solvation -67.841 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds