Wall clock time and date at job start Tue Mar 31 2020 13:37:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52995 * 109.47013 * 2 1
4 4 H 1.08999 * 109.47262 * 55.00309 * 3 2 1
5 5 C 1.50703 * 109.47118 * 174.99821 * 3 2 1
6 6 H 1.07998 * 120.00426 * 119.99775 * 5 3 2
7 7 C 1.37880 * 120.00347 * 300.00379 * 5 3 2
8 8 N 1.31507 * 120.00312 * 179.97438 * 7 5 3
9 9 Si 1.86807 * 119.99536 * 359.97438 * 7 5 3
10 10 H 1.48497 * 109.47113 * 90.00548 * 9 7 5
11 11 H 1.48497 * 109.46803 * 210.00446 * 9 7 5
12 12 H 1.48500 * 109.46994 * 330.00238 * 9 7 5
13 13 N 1.46495 * 109.47508 * 294.99662 * 3 2 1
14 14 C 1.29983 * 120.00298 * 126.61838 * 13 3 2
15 15 O 1.35243 * 120.00148 * 187.44246 * 14 13 3
16 16 C 1.48012 * 119.99951 * 7.43577 * 14 13 3
17 17 C 1.39506 * 120.51632 * 224.03660 * 16 14 13
18 18 N 1.31679 * 120.73810 * 179.97438 * 17 16 14
19 19 C 1.31870 * 121.95342 * 0.02843 * 18 17 16
20 20 C 1.38974 * 120.95896 * 359.97101 * 19 18 17
21 21 N 1.39742 * 120.42568 * 179.97438 * 20 19 18
22 22 C 1.47018 * 110.99831 * 236.32291 * 21 20 19
23 23 C 1.53097 * 109.25849 * 182.35207 * 22 21 20
24 24 O 1.43017 * 109.29376 * 303.22040 * 23 22 21
25 25 C 1.43017 * 113.73972 * 58.64207 * 24 23 22
26 26 C 1.47011 * 111.00000 * 0.02562 * 21 20 19
27 27 C 1.39075 * 119.14353 * 0.27986 * 20 19 18
28 28 H 1.09003 * 109.47179 * 300.00166 * 1 2 3
29 29 H 1.09000 * 109.47234 * 60.00261 * 1 2 3
30 30 H 1.09005 * 109.47072 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47179 * 239.99834 * 2 1 3
32 32 H 1.09004 * 109.46795 * 119.99931 * 2 1 3
33 33 H 0.97002 * 119.99972 * 179.97438 * 8 7 5
34 34 H 0.96694 * 113.99802 * 359.97438 * 15 14 13
35 35 H 1.07994 * 119.63222 * 0.03100 * 17 16 14
36 36 H 1.08012 * 119.51794 * 179.97438 * 19 18 17
37 37 H 1.09010 * 109.47351 * 62.43786 * 22 21 20
38 38 H 1.09005 * 109.54331 * 302.30888 * 22 21 20
39 39 H 1.08998 * 109.50551 * 183.26175 * 23 22 21
40 40 H 1.09005 * 109.50103 * 63.17154 * 23 22 21
41 41 H 1.09002 * 109.50584 * 61.26460 * 25 24 23
42 42 H 1.09002 * 109.50576 * 181.35551 * 25 24 23
43 43 H 1.09004 * 109.50650 * 57.67573 * 26 21 20
44 44 H 1.08997 * 109.54516 * 297.56307 * 26 21 20
45 45 H 1.08008 * 120.88049 * 179.72221 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6054 1.9815 0.8418
5 6 3.5419 1.4443 0.1239
6 1 4.1472 1.8888 -0.6522
7 6 4.1433 0.8783 1.2280
8 7 5.4539 0.8795 1.3358
9 14 3.0962 0.1099 2.5707
10 1 2.8745 -1.3261 2.2646
11 1 3.7940 0.2359 3.8755
12 1 1.7880 0.8092 2.6394
13 7 1.6525 2.0975 -1.2518
14 6 1.0087 3.2263 -1.2225
15 8 0.5195 3.7557 -2.3668
16 6 0.8110 3.9323 0.0633
17 6 -0.4285 4.4866 0.3838
18 7 -0.6094 5.1152 1.5266
19 6 0.3600 5.2493 2.4104
20 6 1.6249 4.7265 2.1691
21 7 2.6442 4.8755 3.1133
22 6 3.8179 5.5344 2.5219
23 6 4.9288 5.6243 3.5715
24 8 4.4380 6.3200 4.7206
25 6 3.2957 5.7045 5.3220
26 6 2.1677 5.6158 4.2906
27 6 1.8648 4.0587 0.9729
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 5.8770 0.4817 2.1128
34 1 0.6982 3.2236 -3.1542
35 1 -1.2490 4.3984 -0.3128
36 1 0.1682 5.7730 3.3354
37 1 3.5448 6.5375 2.1941
38 1 4.1698 4.9550 1.6682
39 1 5.7798 6.1636 3.1555
40 1 5.2396 4.6199 3.8594
41 1 3.5583 4.7022 5.6605
42 1 2.9661 6.3013 6.1724
43 1 1.3151 5.0956 4.7271
44 1 1.8676 6.6205 3.9927
45 1 2.8384 3.6453 0.7545
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330883226.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:37:07
Heat of formation + Delta-G solvation = -8.311660 kcal
Electronic energy + Delta-G solvation = -28471.067427 eV
Core-core repulsion = 24682.935464 eV
Total energy + Delta-G solvation = -3788.131963 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.80291 -39.25031 -38.01193 -35.96094 -35.89782 -32.91246 -32.12171 -31.42511
-30.79325 -30.12484 -27.60593 -26.74171 -25.10575 -23.52955 -22.74290 -22.44451
-21.32777 -20.56840 -19.54817 -17.73753 -16.99057 -16.71003 -16.49583 -16.22258
-15.87404 -15.55637 -15.11872 -14.93970 -14.77209 -14.45813 -14.14977 -13.84173
-13.71467 -13.23377 -13.04576 -12.91935 -12.67150 -12.42878 -12.23180 -12.10956
-11.81766 -11.53986 -11.35717 -11.18197 -10.94396 -10.79039 -10.66785 -10.41550
-10.30092 -9.82132 -9.73907 -9.54891 -9.48330 -9.05964 -8.73945 -8.48405
-8.19198 -7.83761 -6.23511 -4.24380 1.03767 1.48877 2.95123 3.18044
3.30343 3.31733 3.43058 3.79080 3.90365 4.04046 4.27418 4.59095
4.78239 4.81601 4.90411 5.02272 5.03835 5.06670 5.17727 5.23444
5.31471 5.43388 5.47078 5.52549 5.64401 5.68441 5.79587 5.84136
5.87676 5.93303 5.99790 6.02825 6.20984 6.47410 6.50869 6.53958
6.64434 6.73516 6.82001 6.85223 7.05959 7.17428 7.21128 7.53168
7.79493 8.09216 8.26587 8.67773 8.83228 9.37937 10.87909
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.010491 B = 0.006648 C = 0.004926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2668.352120 B = 4211.064189 C = 5682.233427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.118 4.118
3 C 0.180 3.820
4 H 0.024 0.976
5 C -0.515 4.515
6 H 0.079 0.921
7 C 0.084 3.916
8 N -0.888 5.888
9 Si 0.879 3.121
10 H -0.278 1.278
11 H -0.294 1.294
12 H -0.265 1.265
13 N -0.532 5.532
14 C 0.346 3.654
15 O -0.479 6.479
16 C -0.100 4.100
17 C 0.103 3.897
18 N -0.472 5.472
19 C 0.054 3.946
20 C 0.054 3.946
21 N -0.477 5.477
22 C 0.021 3.979
23 C 0.063 3.937
24 O -0.386 6.386
25 C 0.063 3.937
26 C 0.011 3.989
27 C -0.050 4.050
28 H 0.041 0.959
29 H 0.052 0.948
30 H 0.043 0.957
31 H 0.068 0.932
32 H 0.052 0.948
33 H 0.266 0.734
34 H 0.401 0.599
35 H 0.158 0.842
36 H 0.155 0.845
37 H 0.051 0.949
38 H 0.103 0.897
39 H 0.104 0.896
40 H 0.068 0.932
41 H 0.062 0.938
42 H 0.101 0.899
43 H 0.093 0.907
44 H 0.056 0.944
45 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.176 9.077 3.569 12.108
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.155 4.155
3 C 0.071 3.929
4 H 0.041 0.959
5 C -0.553 4.553
6 H 0.097 0.903
7 C -0.120 4.120
8 N -0.525 5.525
9 Si 0.709 3.291
10 H -0.205 1.205
11 H -0.221 1.221
12 H -0.190 1.190
13 N -0.263 5.263
14 C 0.116 3.884
15 O -0.275 6.275
16 C -0.106 4.106
17 C -0.058 4.058
18 N -0.180 5.180
19 C -0.106 4.106
20 C -0.046 4.046
21 N -0.193 5.193
22 C -0.105 4.105
23 C -0.014 4.014
24 O -0.305 6.305
25 C -0.014 4.014
26 C -0.116 4.116
27 C -0.079 4.079
28 H 0.060 0.940
29 H 0.071 0.929
30 H 0.062 0.938
31 H 0.086 0.914
32 H 0.070 0.930
33 H 0.076 0.924
34 H 0.255 0.745
35 H 0.176 0.824
36 H 0.172 0.828
37 H 0.069 0.931
38 H 0.121 0.879
39 H 0.122 0.878
40 H 0.086 0.914
41 H 0.081 0.919
42 H 0.119 0.881
43 H 0.111 0.889
44 H 0.074 0.926
45 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges -7.391 8.932 3.915 12.237
hybrid contribution 0.020 -0.703 0.475 0.848
sum -7.371 8.230 4.390 11.888
Atomic orbital electron populations
1.21835 0.97895 1.00277 1.00871 1.21876 0.93346 0.98929 1.01385
1.19942 0.97057 0.90619 0.85258 0.95895 1.20832 0.88066 1.39493
1.06861 0.90276 1.24834 0.94701 0.95011 0.97480 1.69859 1.08512
1.44462 1.29647 0.86958 0.80991 0.79847 0.81298 1.20511 1.22125
1.19008 1.71900 1.11376 1.09148 1.33843 1.21122 0.91986 0.90866
0.84403 1.84853 1.74738 1.51485 1.16471 1.19823 0.95352 1.00824
0.94551 1.22785 0.95701 0.93750 0.93536 1.67534 1.32886 1.15134
1.02399 1.22964 0.89182 0.98964 0.99454 1.19776 0.93006 0.98963
0.92815 1.59150 1.05756 1.48170 1.06194 1.22979 0.90390 0.98009
0.99077 1.22733 0.95279 0.98327 0.85084 1.87964 1.46193 1.52138
1.44184 1.22673 0.85120 0.99079 0.94523 1.22997 0.99348 0.97352
0.91916 1.22011 1.01500 0.93199 0.91144 0.94013 0.92927 0.93780
0.91362 0.92951 0.92361 0.74457 0.82449 0.82796 0.93108 0.87865
0.87820 0.91352 0.91939 0.88126 0.88901 0.92601 0.81155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.83 9.80 37.16 0.36 -2.46 16
2 C -0.12 -2.60 5.11 -26.74 -0.14 -2.74 16
3 C 0.18 4.16 1.06 -69.09 -0.07 4.09 16
4 H 0.02 0.56 3.92 -51.93 -0.20 0.36 16
5 C -0.51 -13.72 7.82 -34.44 -0.27 -13.99 16
6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16
7 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16
8 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16
9 Si 0.88 21.53 24.41 -169.99 -4.15 17.38 16
10 H -0.28 -6.71 6.83 56.52 0.39 -6.32 16
11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16
12 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16
13 N -0.53 -11.12 9.52 -53.87 -0.51 -11.63 16
14 C 0.35 6.32 7.70 -14.33 -0.11 6.21 16
15 O -0.48 -7.13 13.51 -17.42 -0.24 -7.36 16
16 C -0.10 -1.81 4.87 -104.84 -0.51 -2.32 16
17 C 0.10 1.68 10.88 -17.14 -0.19 1.49 16
18 N -0.47 -7.69 10.34 -12.77 -0.13 -7.82 16
19 C 0.05 0.83 10.00 -17.26 -0.17 0.66 16
20 C 0.05 0.91 5.65 -83.67 -0.47 0.44 16
21 N -0.48 -7.47 4.78 -170.70 -0.82 -8.29 16
22 C 0.02 0.31 5.41 -3.71 -0.02 0.29 16
23 C 0.06 0.85 7.01 37.21 0.26 1.11 16
24 O -0.39 -5.20 10.83 -35.23 -0.38 -5.58 16
25 C 0.06 0.72 7.01 37.21 0.26 0.99 16
26 C 0.01 0.13 4.34 -3.71 -0.02 0.12 16
27 C -0.05 -0.95 6.70 -38.69 -0.26 -1.21 16
28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
29 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16
30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16
32 H 0.05 1.22 3.22 -51.93 -0.17 1.05 16
33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16
34 H 0.40 4.56 8.97 45.56 0.41 4.97 16
35 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16
36 H 0.15 1.91 5.81 -52.48 -0.31 1.60 16
37 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16
38 H 0.10 1.69 6.91 -51.93 -0.36 1.33 16
39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16
40 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
42 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16
43 H 0.09 1.01 7.24 -51.93 -0.38 0.64 16
44 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16
45 H 0.17 3.71 4.97 -52.48 -0.26 3.45 16
LS Contribution 352.50 15.07 5.31 5.31
Total: -1.00 -31.03 352.50 -7.05 -38.08
By element:
Atomic # 1 Polarization: 15.24 SS G_CDS: -5.47 Total: 9.78 kcal
Atomic # 6 Polarization: -3.71 SS G_CDS: -1.44 Total: -5.15 kcal
Atomic # 7 Polarization: -51.75 SS G_CDS: -0.69 Total: -52.44 kcal
Atomic # 8 Polarization: -12.33 SS G_CDS: -0.62 Total: -12.95 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -4.15 Total: 17.38 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -31.03 -7.05 -38.08 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330883226.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.768 kcal
(2) G-P(sol) polarization free energy of solvation -31.032 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.263 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds