Wall clock time and date at job start Tue Mar 31 2020 13:37:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52995 * 109.47013 * 2 1
4 4 H 1.08999 * 109.47262 * 55.00309 * 3 2 1
5 5 C 1.50703 * 109.47118 * 174.99821 * 3 2 1
6 6 H 1.07998 * 120.00426 * 119.99775 * 5 3 2
7 7 C 1.37880 * 120.00347 * 300.00379 * 5 3 2
8 8 N 1.31507 * 120.00312 * 179.97438 * 7 5 3
9 9 Si 1.86807 * 119.99536 * 359.97438 * 7 5 3
10 10 H 1.48497 * 109.47113 * 90.00548 * 9 7 5
11 11 H 1.48497 * 109.46803 * 210.00446 * 9 7 5
12 12 H 1.48500 * 109.46994 * 330.00238 * 9 7 5
13 13 N 1.46495 * 109.47508 * 294.99662 * 3 2 1
14 14 C 1.29983 * 120.00298 * 126.61838 * 13 3 2
15 15 O 1.35243 * 120.00148 * 187.44246 * 14 13 3
16 16 C 1.48012 * 119.99951 * 7.43577 * 14 13 3
17 17 C 1.39506 * 120.51632 * 224.03660 * 16 14 13
18 18 N 1.31679 * 120.73810 * 179.97438 * 17 16 14
19 19 C 1.31870 * 121.95342 * 0.02843 * 18 17 16
20 20 C 1.38974 * 120.95896 * 359.97101 * 19 18 17
21 21 N 1.39742 * 120.42568 * 179.97438 * 20 19 18
22 22 C 1.47018 * 110.99831 * 236.32291 * 21 20 19
23 23 C 1.53097 * 109.25849 * 182.35207 * 22 21 20
24 24 O 1.43017 * 109.29376 * 303.22040 * 23 22 21
25 25 C 1.43017 * 113.73972 * 58.64207 * 24 23 22
26 26 C 1.47011 * 111.00000 * 0.02562 * 21 20 19
27 27 C 1.39075 * 119.14353 * 0.27986 * 20 19 18
28 28 H 1.09003 * 109.47179 * 300.00166 * 1 2 3
29 29 H 1.09000 * 109.47234 * 60.00261 * 1 2 3
30 30 H 1.09005 * 109.47072 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47179 * 239.99834 * 2 1 3
32 32 H 1.09004 * 109.46795 * 119.99931 * 2 1 3
33 33 H 0.97002 * 119.99972 * 179.97438 * 8 7 5
34 34 H 0.96694 * 113.99802 * 359.97438 * 15 14 13
35 35 H 1.07994 * 119.63222 * 0.03100 * 17 16 14
36 36 H 1.08012 * 119.51794 * 179.97438 * 19 18 17
37 37 H 1.09010 * 109.47351 * 62.43786 * 22 21 20
38 38 H 1.09005 * 109.54331 * 302.30888 * 22 21 20
39 39 H 1.08998 * 109.50551 * 183.26175 * 23 22 21
40 40 H 1.09005 * 109.50103 * 63.17154 * 23 22 21
41 41 H 1.09002 * 109.50584 * 61.26460 * 25 24 23
42 42 H 1.09002 * 109.50576 * 181.35551 * 25 24 23
43 43 H 1.09004 * 109.50650 * 57.67573 * 26 21 20
44 44 H 1.08997 * 109.54516 * 297.56307 * 26 21 20
45 45 H 1.08008 * 120.88049 * 179.72221 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6054 1.9815 0.8418
5 6 3.5419 1.4443 0.1239
6 1 4.1472 1.8888 -0.6522
7 6 4.1433 0.8783 1.2280
8 7 5.4539 0.8795 1.3358
9 14 3.0962 0.1099 2.5707
10 1 2.8745 -1.3261 2.2646
11 1 3.7940 0.2359 3.8755
12 1 1.7880 0.8092 2.6394
13 7 1.6525 2.0975 -1.2518
14 6 1.0087 3.2263 -1.2225
15 8 0.5195 3.7557 -2.3668
16 6 0.8110 3.9323 0.0633
17 6 -0.4285 4.4866 0.3838
18 7 -0.6094 5.1152 1.5266
19 6 0.3600 5.2493 2.4104
20 6 1.6249 4.7265 2.1691
21 7 2.6442 4.8755 3.1133
22 6 3.8179 5.5344 2.5219
23 6 4.9288 5.6243 3.5715
24 8 4.4380 6.3200 4.7206
25 6 3.2957 5.7045 5.3220
26 6 2.1677 5.6158 4.2906
27 6 1.8648 4.0587 0.9729
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 5.8770 0.4817 2.1128
34 1 0.6982 3.2236 -3.1542
35 1 -1.2490 4.3984 -0.3128
36 1 0.1682 5.7730 3.3354
37 1 3.5448 6.5375 2.1941
38 1 4.1698 4.9550 1.6682
39 1 5.7798 6.1636 3.1555
40 1 5.2396 4.6199 3.8594
41 1 3.5583 4.7022 5.6605
42 1 2.9661 6.3013 6.1724
43 1 1.3151 5.0956 4.7271
44 1 1.8676 6.6205 3.9927
45 1 2.8384 3.6453 0.7545
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000330883226.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:37:06
Heat of formation + Delta-G solvation = -35.702946 kcal
Electronic energy + Delta-G solvation = -28472.255202 eV
Core-core repulsion = 24682.935464 eV
Total energy + Delta-G solvation = -3789.319738 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.04943 -40.45480 -39.33983 -37.57122 -37.04469 -34.60187 -33.89300 -32.60048
-32.10348 -31.40252 -29.41737 -27.88842 -26.34531 -25.01669 -24.33036 -23.68990
-22.77549 -21.83382 -20.98183 -19.14208 -18.76116 -18.22255 -17.73728 -17.59211
-17.06571 -16.78392 -16.57988 -16.21020 -16.02399 -15.62296 -15.42414 -15.30249
-15.15667 -14.84236 -14.60994 -14.42053 -14.21312 -13.87146 -13.53368 -13.45073
-13.24957 -12.99882 -12.80831 -12.59877 -12.39429 -12.36767 -12.03442 -11.87010
-11.65155 -11.52908 -11.42719 -11.05927 -10.81190 -10.71736 -10.51141 -10.04184
-9.76896 -9.06489 -8.36844 -6.39401 -0.27734 0.14100 1.20763 1.28132
1.35265 1.49005 2.22594 2.23828 2.58799 2.74182 2.83458 2.96962
3.40475 3.55690 3.68808 3.77510 3.82746 3.92869 3.94292 4.03725
4.13802 4.19364 4.27148 4.28144 4.34918 4.43427 4.47073 4.59506
4.65149 4.69009 4.76702 4.81000 4.88690 4.91752 4.98331 5.09091
5.16440 5.19245 5.32381 5.44395 5.61112 5.70001 5.95818 6.03717
6.08631 6.51067 6.63409 6.81293 7.12980 7.28308 8.78613
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.010491 B = 0.006648 C = 0.004926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2668.352120 B = 4211.064189 C = 5682.233427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.122 4.122
3 C 0.191 3.809
4 H 0.019 0.981
5 C -0.507 4.507
6 H 0.033 0.967
7 C 0.039 3.961
8 N -0.931 5.931
9 Si 0.933 3.067
10 H -0.269 1.269
11 H -0.295 1.295
12 H -0.258 1.258
13 N -0.565 5.565
14 C 0.368 3.632
15 O -0.465 6.465
16 C -0.119 4.119
17 C 0.109 3.891
18 N -0.473 5.473
19 C 0.066 3.934
20 C 0.052 3.948
21 N -0.499 5.499
22 C 0.026 3.974
23 C 0.068 3.932
24 O -0.392 6.392
25 C 0.059 3.941
26 C 0.009 3.991
27 C -0.070 4.070
28 H 0.040 0.960
29 H 0.060 0.940
30 H 0.068 0.932
31 H 0.059 0.941
32 H 0.039 0.961
33 H 0.267 0.733
34 H 0.418 0.582
35 H 0.183 0.817
36 H 0.190 0.810
37 H 0.063 0.937
38 H 0.073 0.927
39 H 0.121 0.879
40 H 0.047 0.953
41 H 0.051 0.949
42 H 0.137 0.863
43 H 0.110 0.890
44 H 0.073 0.927
45 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.264 10.246 4.808 15.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.160 4.160
3 C 0.082 3.918
4 H 0.036 0.964
5 C -0.545 4.545
6 H 0.051 0.949
7 C -0.160 4.160
8 N -0.570 5.570
9 Si 0.761 3.239
10 H -0.195 1.195
11 H -0.223 1.223
12 H -0.183 1.183
13 N -0.297 5.297
14 C 0.139 3.861
15 O -0.263 6.263
16 C -0.125 4.125
17 C -0.050 4.050
18 N -0.180 5.180
19 C -0.094 4.094
20 C -0.048 4.048
21 N -0.215 5.215
22 C -0.099 4.099
23 C -0.009 4.009
24 O -0.310 6.310
25 C -0.017 4.017
26 C -0.117 4.117
27 C -0.099 4.099
28 H 0.059 0.941
29 H 0.079 0.921
30 H 0.087 0.913
31 H 0.078 0.922
32 H 0.057 0.943
33 H 0.077 0.923
34 H 0.276 0.724
35 H 0.200 0.800
36 H 0.207 0.793
37 H 0.081 0.919
38 H 0.091 0.909
39 H 0.139 0.861
40 H 0.065 0.935
41 H 0.070 0.930
42 H 0.155 0.845
43 H 0.128 0.872
44 H 0.091 0.909
45 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -10.502 10.113 5.124 15.454
hybrid contribution 0.988 -0.908 0.017 1.342
sum -9.514 9.204 5.141 14.201
Atomic orbital electron populations
1.21726 0.94811 1.02056 1.01203 1.21838 0.96155 0.97734 1.00273
1.19636 0.94192 0.91667 0.86349 0.96360 1.20937 0.90259 1.38033
1.05273 0.94871 1.25447 0.95483 0.95664 0.99438 1.69981 1.10144
1.46259 1.30594 0.86080 0.79686 0.79479 0.78628 1.19529 1.22264
1.18281 1.71862 1.14435 1.11079 1.32353 1.21295 0.89705 0.89614
0.85489 1.84850 1.73820 1.51302 1.16338 1.19901 0.96132 1.02027
0.94440 1.23094 0.95336 0.92676 0.93942 1.67651 1.32905 1.15038
1.02440 1.23463 0.87995 0.97701 1.00214 1.19879 0.94095 0.98628
0.92198 1.59132 1.05846 1.49491 1.07026 1.22869 0.90704 0.97830
0.98506 1.22666 0.95479 0.97609 0.85127 1.87960 1.47055 1.52186
1.43828 1.22909 0.84310 0.99297 0.95223 1.23181 1.00056 0.97997
0.90504 1.21757 1.00367 0.94838 0.92986 0.94085 0.92097 0.91292
0.92189 0.94302 0.92337 0.72438 0.80027 0.79343 0.91882 0.90900
0.86079 0.93509 0.93032 0.84548 0.87198 0.90873 0.84903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.93 9.80 71.98 0.71 -4.23 16
2 C -0.12 -5.35 5.11 30.59 0.16 -5.20 16
3 C 0.19 8.99 1.06 44.25 0.05 9.03 16
4 H 0.02 0.91 3.92 -2.39 -0.01 0.90 16
5 C -0.51 -28.46 7.82 25.60 0.20 -28.26 16
6 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16
7 C 0.04 2.24 5.45 84.66 0.46 2.70 16
8 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16
9 Si 0.93 45.31 24.41 68.60 1.67 46.98 16
10 H -0.27 -12.56 6.83 99.48 0.68 -11.88 16
11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16
12 H -0.26 -12.13 6.53 99.48 0.65 -11.48 16
13 N -0.57 -23.82 9.52 -438.58 -4.18 -27.99 16
14 C 0.37 13.18 7.70 87.56 0.67 13.86 16
15 O -0.47 -12.96 13.51 -85.26 -1.15 -14.12 16
16 C -0.12 -4.23 4.87 -20.01 -0.10 -4.32 16
17 C 0.11 3.29 10.88 85.02 0.92 4.22 16
18 N -0.47 -13.88 10.34 -194.32 -2.01 -15.89 16
19 C 0.07 1.83 10.00 84.86 0.85 2.68 16
20 C 0.05 1.70 5.65 38.26 0.22 1.91 16
21 N -0.50 -15.29 4.78 -693.98 -3.32 -18.61 16
22 C 0.03 0.79 5.41 86.31 0.47 1.26 16
23 C 0.07 1.87 7.01 72.01 0.50 2.37 16
24 O -0.39 -9.98 10.83 -148.98 -1.61 -11.59 16
25 C 0.06 1.22 7.01 72.02 0.50 1.72 16
26 C 0.01 0.19 4.34 86.32 0.37 0.56 16
27 C -0.07 -2.71 6.70 22.85 0.15 -2.56 16
28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
29 H 0.06 2.02 7.75 -2.39 -0.02 2.00 16
30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16
31 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16
32 H 0.04 1.79 3.22 -2.38 -0.01 1.78 16
33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16
34 H 0.42 8.71 8.97 -74.06 -0.66 8.05 16
35 H 0.18 4.48 8.06 -2.91 -0.02 4.45 16
36 H 0.19 3.81 5.81 -2.90 -0.02 3.79 16
37 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16
38 H 0.07 2.60 6.91 -2.38 -0.02 2.58 16
39 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16
40 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16
41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
42 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16
43 H 0.11 1.98 7.24 -2.38 -0.02 1.96 16
44 H 0.07 1.34 7.55 -2.39 -0.02 1.33 16
45 H 0.13 6.19 4.97 -2.91 -0.01 6.17 16
Total: -1.00 -69.74 352.50 -3.87 -73.61
By element:
Atomic # 1 Polarization: 27.35 SS G_CDS: 0.28 Total: 27.63 kcal
Atomic # 6 Polarization: -10.38 SS G_CDS: 6.14 Total: -4.24 kcal
Atomic # 7 Polarization: -109.07 SS G_CDS: -9.20 Total: -118.27 kcal
Atomic # 8 Polarization: -22.94 SS G_CDS: -2.76 Total: -25.70 kcal
Atomic # 14 Polarization: 45.31 SS G_CDS: 1.67 Total: 46.98 kcal
Total: -69.74 -3.87 -73.61 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330883226.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.907 kcal
(2) G-P(sol) polarization free energy of solvation -69.738 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.872 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds