Wall clock time and date at job start Tue Mar 31 2020 12:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47344 * 2 1 4 4 C 1.50701 * 109.46747 * 240.00250 * 2 1 3 5 5 H 1.08006 * 120.00065 * 241.34192 * 4 2 1 6 6 C 1.37879 * 120.00319 * 61.34784 * 4 2 1 7 7 N 1.31515 * 119.99902 * 193.98079 * 6 4 2 8 8 Si 1.86792 * 119.99813 * 13.97116 * 6 4 2 9 9 H 1.48507 * 109.47060 * 84.55113 * 8 6 4 10 10 H 1.48503 * 109.47368 * 204.55295 * 8 6 4 11 11 H 1.48497 * 109.47645 * 324.55395 * 8 6 4 12 12 C 1.52993 * 109.47418 * 120.00423 * 2 1 3 13 13 N 1.46504 * 109.47140 * 299.99820 * 12 2 1 14 14 C 1.34773 * 120.00068 * 180.02562 * 13 12 2 15 15 O 1.21591 * 120.00267 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99966 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00184 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46824 * 179.97438 * 17 16 14 19 19 C 1.38358 * 119.85160 * 90.00462 * 18 17 16 20 20 C 1.37960 * 120.14104 * 179.97438 * 19 18 17 21 21 C 1.39574 * 119.85495 * 0.02562 * 20 19 18 22 22 C 1.47850 * 120.14663 * 179.97438 * 21 20 19 23 23 N 1.34769 * 119.99879 * 179.97438 * 22 21 20 24 24 O 1.21550 * 119.99387 * 359.97438 * 22 21 20 25 25 C 1.39575 * 119.71009 * 0.25176 * 21 20 19 26 26 C 1.37958 * 119.85511 * 359.47470 * 25 21 20 27 27 H 1.08998 * 109.46930 * 309.36235 * 1 2 3 28 28 H 1.08997 * 109.47520 * 69.36504 * 1 2 3 29 29 H 1.08999 * 109.47095 * 189.36962 * 1 2 3 30 30 H 1.08994 * 109.47184 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.47028 * 300.00306 * 3 2 1 32 32 H 1.08998 * 109.46988 * 59.99860 * 3 2 1 33 33 H 0.97003 * 119.99824 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47105 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.47540 * 59.99487 * 12 2 1 36 36 H 0.97002 * 119.99941 * 359.97438 * 13 12 2 37 37 H 0.97008 * 119.99585 * 359.97438 * 16 14 13 38 38 H 1.08993 * 109.47099 * 59.99574 * 17 16 14 39 39 H 1.09000 * 109.46973 * 299.99717 * 17 16 14 40 40 H 1.07997 * 119.93032 * 0.02562 * 19 18 17 41 41 H 1.07999 * 120.07228 * 179.97438 * 20 19 18 42 42 H 0.96997 * 120.00760 * 0.02562 * 23 22 21 43 43 H 0.97007 * 119.99466 * 179.72681 * 23 22 21 44 44 H 1.08006 * 120.07455 * 179.72735 * 25 21 20 45 45 H 1.07999 * 119.92913 * 180.27755 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6351 -1.6010 -1.1317 6 6 1.7222 -0.2233 -2.4826 7 7 1.9155 -0.9726 -3.5460 8 14 1.0274 1.5006 -2.6684 9 1 2.1415 2.4817 -2.7083 10 1 0.2467 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5769 -1.4796 3.7809 16 7 1.4282 0.1440 4.7700 17 6 1.7822 -0.3565 6.1005 18 6 1.1585 0.5255 7.1513 19 6 -0.1063 0.2357 7.6315 20 6 -0.6827 1.0389 8.5938 21 6 0.0126 2.1460 9.0824 22 6 -0.5992 3.0114 10.1133 23 7 0.0751 4.0794 10.5834 24 8 -1.7104 2.7596 10.5367 25 6 1.2858 2.4360 8.5894 26 6 1.8532 1.6216 7.6313 27 1 -0.3633 0.6518 0.7945 28 1 -0.3634 0.3621 -0.9617 29 1 -0.3633 -1.0139 0.1673 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6970 -0.6300 -4.4269 34 1 3.1301 -0.7217 1.2488 35 1 1.6767 -1.7490 1.2492 36 1 0.9944 0.7581 2.3565 37 1 0.8702 0.9325 4.6809 38 1 2.8659 -0.3475 6.2156 39 1 1.4130 -1.3757 6.2153 40 1 -0.6431 -0.6215 7.2529 41 1 -1.6702 0.8119 8.9676 42 1 0.9617 4.2806 10.2452 43 1 -0.3280 4.6495 11.2569 44 1 1.8274 3.2938 8.9602 45 1 2.8401 1.8423 7.2522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457754338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:24 Heat of formation + Delta-G solvation = -32.047192 kcal Electronic energy + Delta-G solvation = -25724.214782 eV Core-core repulsion = 21935.053569 eV Total energy + Delta-G solvation = -3789.161213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65070 -39.77467 -38.75162 -36.89124 -34.95108 -34.25279 -33.32117 -31.80400 -31.41131 -31.17326 -27.23322 -26.39627 -25.56177 -24.71384 -23.15820 -23.03822 -20.84872 -20.73247 -19.19937 -18.75585 -18.24575 -17.35113 -16.30701 -16.09193 -15.77691 -15.54603 -15.43718 -15.21482 -15.12872 -14.92930 -14.15952 -14.04058 -13.91462 -13.60911 -13.50155 -12.96626 -12.87505 -12.67303 -12.57817 -12.21490 -12.05141 -11.94104 -11.54877 -11.28424 -10.56464 -10.43461 -10.32184 -10.23983 -10.17796 -10.07148 -9.98166 -9.48955 -9.33968 -9.14159 -9.12698 -8.69422 -8.49563 -8.36719 -6.15111 -4.12250 0.25837 0.88423 2.30869 2.97716 3.01011 3.23151 3.30049 3.37951 3.45443 3.50506 4.15414 4.25767 4.34850 4.38702 4.50813 4.60298 4.85107 4.88403 5.15538 5.20600 5.32949 5.52265 5.55349 5.73712 5.75985 5.82436 6.04087 6.07243 6.09336 6.23518 6.34208 6.36183 6.43610 6.45652 6.53462 6.61651 6.69921 6.78774 6.81575 6.97529 7.16440 7.23899 7.42998 7.72426 7.73008 8.28128 8.46226 8.88232 8.91556 9.48689 10.97916 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.002189 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.763050 B =12789.159079 C =13363.280168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.146 4.146 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.249 1.249 12 C 0.160 3.840 13 N -0.737 5.737 14 C 0.700 3.300 15 O -0.594 6.594 16 N -0.751 5.751 17 C 0.177 3.823 18 C -0.075 4.075 19 C -0.106 4.106 20 C -0.060 4.060 21 C -0.137 4.137 22 C 0.564 3.436 23 N -0.851 5.851 24 O -0.540 6.540 25 C -0.088 4.088 26 C -0.107 4.107 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.028 0.972 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.392 0.608 37 H 0.395 0.605 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.401 0.599 43 H 0.405 0.595 44 H 0.128 0.872 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 10.802 26.453 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.037 3.963 13 N -0.391 5.391 14 C 0.399 3.601 15 O -0.473 6.473 16 N -0.408 5.408 17 C 0.053 3.947 18 C -0.076 4.076 19 C -0.125 4.125 20 C -0.079 4.079 21 C -0.141 4.141 22 C 0.350 3.650 23 N -0.415 5.415 24 O -0.417 6.417 25 C -0.107 4.107 26 C -0.126 4.126 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.226 0.774 37 H 0.228 0.772 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.231 0.769 43 H 0.236 0.764 44 H 0.145 0.855 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.379 9.505 26.473 28.228 hybrid contribution -0.486 2.158 -0.248 2.226 sum -2.865 11.662 26.225 28.844 Atomic orbital electron populations 1.22285 0.97859 0.99839 0.99863 1.18732 0.92513 0.92265 0.93800 1.22349 1.01185 0.98336 0.98464 1.20711 1.34026 1.12314 0.87932 0.90496 1.24981 0.94718 0.97310 0.95815 1.69953 1.48172 1.35886 0.98714 0.87285 0.79296 0.85570 0.75955 1.21408 1.23447 1.17557 1.21386 0.98368 0.95463 0.81041 1.45501 1.55827 1.33089 1.04732 1.16012 0.80539 0.82970 0.80549 1.90915 1.42884 1.27516 1.85972 1.45121 1.57735 1.33574 1.04352 1.20013 0.99749 0.96139 0.78799 1.20233 0.94590 0.95772 0.96967 1.21187 0.94665 1.00040 0.96604 1.21307 0.99858 0.92320 0.94373 1.19925 0.96008 0.98228 0.99902 1.18320 0.84864 0.80552 0.81289 1.43763 1.21888 1.30166 1.45710 1.90831 1.19481 1.71856 1.59535 1.21269 0.93956 0.99089 0.96361 1.21097 1.00500 0.94211 0.96784 0.96025 0.92586 0.93383 0.92793 0.94113 0.95254 0.92569 0.92160 0.92049 0.77378 0.77201 0.90546 0.90502 0.84717 0.84386 0.76890 0.76351 0.85460 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.53 37.16 0.28 -2.55 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.91 7.52 37.16 0.28 -2.63 16 4 C -0.51 -13.61 8.62 -34.44 -0.30 -13.91 16 5 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 6 C 0.07 2.05 5.32 -17.82 -0.09 1.96 16 7 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 8 Si 0.89 20.91 22.79 -169.99 -3.87 17.04 16 9 H -0.29 -6.74 7.10 56.52 0.40 -6.33 16 10 H -0.31 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.25 -5.34 4.65 56.52 0.26 -5.07 16 12 C 0.16 3.18 4.49 -4.04 -0.02 3.16 16 13 N -0.74 -11.77 5.01 -65.22 -0.33 -12.10 16 14 C 0.70 11.16 8.57 -86.92 -0.74 10.41 16 15 O -0.59 -11.99 16.34 5.29 0.09 -11.90 16 16 N -0.75 -8.38 5.55 -66.42 -0.37 -8.75 16 17 C 0.18 1.70 5.79 -5.19 -0.03 1.67 16 18 C -0.07 -0.57 5.25 -104.53 -0.55 -1.12 16 19 C -0.11 -0.80 9.68 -39.64 -0.38 -1.19 16 20 C -0.06 -0.49 9.60 -39.19 -0.38 -0.86 16 21 C -0.14 -1.05 5.87 -104.97 -0.62 -1.66 16 22 C 0.56 4.75 8.05 -12.33 -0.10 4.65 16 23 N -0.85 -3.60 8.82 30.53 0.27 -3.33 16 24 O -0.54 -6.75 17.18 5.32 0.09 -6.66 16 25 C -0.09 -0.49 9.54 -39.19 -0.37 -0.87 16 26 C -0.11 -0.68 9.68 -39.64 -0.38 -1.07 16 27 H 0.02 0.36 7.13 -51.93 -0.37 -0.02 16 28 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 29 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.86 2.25 -51.92 -0.12 0.74 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.39 5.37 6.27 -40.82 -0.26 5.12 16 37 H 0.39 3.52 8.48 -40.82 -0.35 3.18 16 38 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 42 H 0.40 0.58 6.86 -40.82 -0.28 0.30 16 43 H 0.41 1.27 8.93 -40.82 -0.36 0.91 16 44 H 0.13 0.31 6.41 -52.48 -0.34 -0.02 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -35.04 360.80 -7.52 -42.55 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.12 Total: 6.88 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.49 Total: -3.47 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.35 Total: -49.87 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.18 Total: -18.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -3.87 Total: 17.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.04 -7.52 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457754338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.504 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds