Wall clock time and date at job start Tue Mar 31 2020 12:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47081 * 2 1 4 4 C 1.53000 * 109.47396 * 239.99658 * 2 1 3 5 5 N 1.46499 * 109.46752 * 119.99856 * 2 1 3 6 6 C 1.34776 * 120.00470 * 60.00037 * 5 2 1 7 7 O 1.21550 * 119.99626 * 0.02562 * 6 5 2 8 8 C 1.47859 * 120.00668 * 179.97438 * 6 5 2 9 9 C 1.39613 * 120.10680 * 359.97438 * 8 6 5 10 10 C 1.37976 * 119.99426 * 179.97438 * 9 8 6 11 11 C 1.38260 * 120.22259 * 0.07002 * 10 9 8 12 12 C 1.38945 * 120.22315 * 359.95424 * 11 10 9 13 13 N 1.39974 * 119.99733 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00019 * 144.89026 * 13 12 11 15 15 O 1.21593 * 119.99545 * 4.61278 * 14 13 12 16 16 N 1.34777 * 120.00296 * 184.61713 * 14 13 12 17 17 C 1.46503 * 119.99852 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46833 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99671 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00245 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47098 * 90.00057 * 22 20 18 24 24 H 1.48504 * 109.46977 * 209.99995 * 22 20 18 25 25 H 1.48501 * 109.47161 * 329.99838 * 22 20 18 26 26 C 1.38630 * 119.99860 * 0.02562 * 12 11 10 27 27 H 1.08992 * 109.47109 * 300.00601 * 1 2 3 28 28 H 1.09007 * 109.46390 * 60.00178 * 1 2 3 29 29 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47206 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47357 * 299.99226 * 3 2 1 32 32 H 1.08996 * 109.47387 * 60.00178 * 3 2 1 33 33 H 1.09000 * 109.47327 * 300.00474 * 4 2 1 34 34 H 1.08997 * 109.47036 * 59.99902 * 4 2 1 35 35 H 1.08999 * 109.47575 * 180.02562 * 4 2 1 36 36 H 0.97008 * 120.00149 * 240.00066 * 5 2 1 37 37 H 1.08001 * 120.00598 * 0.04761 * 9 8 6 38 38 H 1.08006 * 119.89146 * 180.02562 * 10 9 8 39 39 H 1.08002 * 119.89140 * 179.97438 * 11 10 9 40 40 H 0.96998 * 120.00011 * 324.87980 * 13 12 11 41 41 H 0.96995 * 119.99721 * 359.97438 * 16 14 13 42 42 H 1.09002 * 109.47169 * 300.00128 * 17 16 14 43 43 H 1.08998 * 109.47086 * 60.00043 * 17 16 14 44 44 H 0.97000 * 120.00273 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.10651 * 179.74903 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9809 1.4096 7 8 0.9943 -2.5718 0.6092 8 6 2.1859 -2.6781 2.6166 9 6 2.9896 -2.0021 3.5366 10 6 3.4481 -2.6548 4.6624 11 6 3.1157 -3.9786 4.8832 12 6 2.3169 -4.6603 3.9734 13 7 1.9829 -6.0002 4.2019 14 6 0.7718 -6.4647 3.8359 15 8 0.0012 -5.7435 3.2322 16 7 0.4149 -7.7285 4.1390 17 6 -0.9018 -8.2331 3.7415 18 6 -1.0507 -9.6618 4.1973 19 1 -0.2452 -10.1453 4.7302 20 6 -2.2151 -10.3516 3.9342 21 7 -3.1961 -9.7627 3.2858 22 14 -2.3999 -12.1223 4.4998 23 1 -2.9864 -12.1476 5.8638 24 1 -3.2934 -12.8504 3.5633 25 1 -1.0670 -12.7766 4.5218 26 6 1.8508 -4.0133 2.8394 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6768 -0.2076 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 2.5760 -0.2192 1.8348 37 1 3.2513 -0.9680 3.3677 38 1 4.0693 -2.1301 5.3732 39 1 3.4779 -4.4844 5.7661 40 1 2.6231 -6.5945 4.6236 41 1 1.0298 -8.3039 4.6203 42 1 -1.6789 -7.6225 4.2014 43 1 -0.9968 -8.1857 2.6567 44 1 -4.0155 -10.2478 3.1009 45 1 1.2331 -4.5427 2.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488381095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:01 Heat of formation + Delta-G solvation = -43.711967 kcal Electronic energy + Delta-G solvation = -26144.029831 eV Core-core repulsion = 22354.362796 eV Total energy + Delta-G solvation = -3789.667035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64178 -39.85093 -38.21707 -36.49299 -34.70392 -34.11868 -32.52477 -32.24740 -30.78485 -29.40118 -27.63017 -27.37375 -26.98283 -24.25767 -23.34638 -22.05022 -21.06604 -20.30575 -19.62215 -18.34412 -18.17201 -16.37722 -16.23331 -16.03366 -15.87165 -15.15253 -14.98823 -14.86935 -14.44223 -14.24057 -14.16001 -13.85904 -13.70830 -13.62870 -13.13161 -12.74415 -12.66072 -12.28616 -12.26863 -11.99909 -11.97523 -11.86345 -11.76447 -11.56654 -11.31954 -11.19194 -10.97434 -10.91173 -10.31606 -10.19452 -9.63960 -9.45184 -9.39733 -9.20482 -8.90118 -8.75890 -8.19303 -7.77442 -6.16269 -4.23598 0.84761 1.38687 2.86419 2.95787 3.16277 3.24546 3.31094 3.33661 3.69164 4.00393 4.31420 4.44441 4.69754 4.70886 4.76355 4.84570 4.93042 5.00456 5.16006 5.19801 5.26788 5.39211 5.44998 5.51602 5.57140 5.59549 5.61402 5.78028 5.81187 5.87590 6.16993 6.22685 6.26048 6.31919 6.40840 6.46812 6.58413 7.00897 7.10503 7.39930 7.46178 7.49070 7.53238 7.81074 7.98656 8.24312 8.67846 8.82939 9.18268 9.43323 10.93863 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.002530 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.133731 B =11064.744478 C =12344.681514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.169 3.831 3 C -0.154 4.154 4 C -0.165 4.165 5 N -0.724 5.724 6 C 0.561 3.439 7 O -0.520 6.520 8 C -0.121 4.121 9 C -0.116 4.116 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.173 3.827 13 N -0.696 5.696 14 C 0.688 3.312 15 O -0.576 6.576 16 N -0.721 5.721 17 C 0.265 3.735 18 C -0.544 4.544 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.061 4.061 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.397 0.603 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.404 0.596 41 H 0.388 0.612 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.266 0.734 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.032 20.805 -0.505 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.084 3.916 3 C -0.212 4.212 4 C -0.223 4.223 5 N -0.378 5.378 6 C 0.349 3.651 7 O -0.396 6.396 8 C -0.124 4.124 9 C -0.135 4.135 10 C -0.128 4.128 11 C -0.152 4.152 12 C 0.077 3.923 13 N -0.344 5.344 14 C 0.388 3.612 15 O -0.453 6.453 16 N -0.372 5.372 17 C 0.145 3.855 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.082 4.082 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.232 0.768 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.239 0.761 41 H 0.221 0.779 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 15.487 20.887 -1.743 26.061 hybrid contribution 0.691 -1.257 1.186 1.862 sum 16.178 19.629 -0.557 25.443 Atomic orbital electron populations 1.22248 0.94089 1.04480 1.01598 1.20327 0.94602 0.91558 0.85141 1.22082 1.01456 0.94601 1.03029 1.22236 1.00781 1.03097 0.96168 1.46065 1.54372 1.11991 1.25352 1.18268 0.79890 0.81375 0.85545 1.90761 1.36728 1.66053 1.46041 1.19780 1.01550 0.95016 0.96092 1.21112 0.98277 0.99337 0.94819 1.20766 1.00481 0.93998 0.97508 1.21083 1.01143 0.94792 0.98210 1.17462 0.97143 0.84336 0.93373 1.42821 1.16630 1.09270 1.65707 1.16206 0.81028 0.83491 0.80494 1.90929 1.51828 1.57077 1.45499 1.45773 1.21184 1.10357 1.59908 1.19070 0.76777 0.93476 0.96214 1.21195 1.01759 0.96794 1.38492 0.91885 1.24948 0.95430 0.98808 0.94828 1.69979 1.05615 1.37292 1.39215 0.86396 0.78149 0.83721 0.78512 1.20467 1.20976 1.19772 1.21572 0.97262 0.93488 0.95919 0.92710 0.91951 0.89974 0.92014 0.90827 0.91965 0.90076 0.91940 0.92805 0.76791 0.86117 0.85350 0.85403 0.76052 0.77916 0.95477 0.95389 0.92380 0.82436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 8.40 37.16 0.31 -1.47 16 2 C 0.17 1.59 1.06 -131.82 -0.14 1.45 16 3 C -0.15 -0.93 8.59 37.16 0.32 -0.61 16 4 C -0.16 -1.67 8.40 37.16 0.31 -1.36 16 5 N -0.72 -7.28 5.06 -48.54 -0.25 -7.53 16 6 C 0.56 8.03 7.19 -12.32 -0.09 7.94 16 7 O -0.52 -9.49 12.55 5.32 0.07 -9.42 16 8 C -0.12 -1.68 5.87 -104.99 -0.62 -2.29 16 9 C -0.12 -1.16 9.54 -39.16 -0.37 -1.53 16 10 C -0.11 -1.02 10.02 -39.67 -0.40 -1.41 16 11 C -0.13 -1.44 9.96 -39.31 -0.39 -1.83 16 12 C 0.17 2.56 6.29 -83.73 -0.53 2.04 16 13 N -0.70 -10.59 5.34 -14.25 -0.08 -10.67 16 14 C 0.69 14.21 8.41 -86.92 -0.73 13.48 16 15 O -0.58 -14.46 13.78 5.28 0.07 -14.38 16 16 N -0.72 -15.23 5.55 -66.41 -0.37 -15.60 16 17 C 0.27 7.10 5.43 -5.19 -0.03 7.07 16 18 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 19 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.88 -26.26 13.29 55.43 0.74 -25.52 16 22 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.06 -1.03 8.23 -38.98 -0.32 -1.36 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.17 6.17 -51.93 -0.32 0.85 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.40 2.80 6.50 -40.82 -0.27 2.53 16 37 H 0.12 0.79 6.40 -52.49 -0.34 0.45 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.40 4.54 8.84 -40.82 -0.36 4.18 16 41 H 0.39 6.85 8.34 -40.82 -0.34 6.51 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.16 3.31 5.82 -52.49 -0.31 3.00 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -35.37 372.08 -8.75 -44.12 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.43 Total: 10.82 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -3.09 Total: 6.70 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.05 Total: -59.31 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.14 Total: -23.80 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.37 -8.75 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488381095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.407 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds