Wall clock time and date at job start Tue Mar 31 2020 12:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47081 * 2 1 4 4 C 1.53000 * 109.47396 * 239.99658 * 2 1 3 5 5 N 1.46499 * 109.46752 * 119.99856 * 2 1 3 6 6 C 1.34776 * 120.00470 * 60.00037 * 5 2 1 7 7 O 1.21550 * 119.99626 * 0.02562 * 6 5 2 8 8 C 1.47859 * 120.00668 * 179.97438 * 6 5 2 9 9 C 1.39613 * 120.10680 * 359.97438 * 8 6 5 10 10 C 1.37976 * 119.99426 * 179.97438 * 9 8 6 11 11 C 1.38260 * 120.22259 * 0.07002 * 10 9 8 12 12 C 1.38945 * 120.22315 * 359.95424 * 11 10 9 13 13 N 1.39974 * 119.99733 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00019 * 144.89026 * 13 12 11 15 15 O 1.21593 * 119.99545 * 4.61278 * 14 13 12 16 16 N 1.34777 * 120.00296 * 184.61713 * 14 13 12 17 17 C 1.46503 * 119.99852 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46833 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99671 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00245 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47098 * 90.00057 * 22 20 18 24 24 H 1.48504 * 109.46977 * 209.99995 * 22 20 18 25 25 H 1.48501 * 109.47161 * 329.99838 * 22 20 18 26 26 C 1.38630 * 119.99860 * 0.02562 * 12 11 10 27 27 H 1.08992 * 109.47109 * 300.00601 * 1 2 3 28 28 H 1.09007 * 109.46390 * 60.00178 * 1 2 3 29 29 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47206 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47357 * 299.99226 * 3 2 1 32 32 H 1.08996 * 109.47387 * 60.00178 * 3 2 1 33 33 H 1.09000 * 109.47327 * 300.00474 * 4 2 1 34 34 H 1.08997 * 109.47036 * 59.99902 * 4 2 1 35 35 H 1.08999 * 109.47575 * 180.02562 * 4 2 1 36 36 H 0.97008 * 120.00149 * 240.00066 * 5 2 1 37 37 H 1.08001 * 120.00598 * 0.04761 * 9 8 6 38 38 H 1.08006 * 119.89146 * 180.02562 * 10 9 8 39 39 H 1.08002 * 119.89140 * 179.97438 * 11 10 9 40 40 H 0.96998 * 120.00011 * 324.87980 * 13 12 11 41 41 H 0.96995 * 119.99721 * 359.97438 * 16 14 13 42 42 H 1.09002 * 109.47169 * 300.00128 * 17 16 14 43 43 H 1.08998 * 109.47086 * 60.00043 * 17 16 14 44 44 H 0.97000 * 120.00273 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.10651 * 179.74903 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9809 1.4096 7 8 0.9943 -2.5718 0.6092 8 6 2.1859 -2.6781 2.6166 9 6 2.9896 -2.0021 3.5366 10 6 3.4481 -2.6548 4.6624 11 6 3.1157 -3.9786 4.8832 12 6 2.3169 -4.6603 3.9734 13 7 1.9829 -6.0002 4.2019 14 6 0.7718 -6.4647 3.8359 15 8 0.0012 -5.7435 3.2322 16 7 0.4149 -7.7285 4.1390 17 6 -0.9018 -8.2331 3.7415 18 6 -1.0507 -9.6618 4.1973 19 1 -0.2452 -10.1453 4.7302 20 6 -2.2151 -10.3516 3.9342 21 7 -3.1961 -9.7627 3.2858 22 14 -2.3999 -12.1223 4.4998 23 1 -2.9864 -12.1476 5.8638 24 1 -3.2934 -12.8504 3.5633 25 1 -1.0670 -12.7766 4.5218 26 6 1.8508 -4.0133 2.8394 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6768 -0.2076 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 2.5760 -0.2192 1.8348 37 1 3.2513 -0.9680 3.3677 38 1 4.0693 -2.1301 5.3732 39 1 3.4779 -4.4844 5.7661 40 1 2.6231 -6.5945 4.6236 41 1 1.0298 -8.3039 4.6203 42 1 -1.6789 -7.6225 4.2014 43 1 -0.9968 -8.1857 2.6567 44 1 -4.0155 -10.2478 3.1009 45 1 1.2331 -4.5427 2.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488381095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:01 Heat of formation + Delta-G solvation = -71.323824 kcal Electronic energy + Delta-G solvation = -26145.227171 eV Core-core repulsion = 22354.362796 eV Total energy + Delta-G solvation = -3790.864375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82466 -41.15056 -39.41403 -37.47578 -36.35496 -35.79959 -34.41911 -33.38463 -31.75529 -30.66761 -28.90413 -28.24927 -28.23789 -25.29265 -25.08817 -23.49081 -22.03601 -21.89502 -20.59482 -19.88584 -19.38901 -18.10050 -17.49480 -17.18382 -16.90211 -16.67241 -16.57290 -16.04516 -15.95643 -15.41706 -15.15422 -15.05947 -14.97124 -14.61670 -14.51807 -14.16910 -14.06308 -13.65016 -13.28463 -13.05781 -13.03377 -12.92169 -12.75093 -12.72513 -12.66270 -12.55446 -12.23149 -12.13640 -12.00172 -11.53410 -11.50725 -11.11755 -10.83321 -10.72572 -10.20261 -9.98634 -9.87134 -9.11689 -8.30663 -6.48157 -0.14484 0.36803 1.41727 1.45538 1.55992 1.66647 1.81552 2.08909 2.17029 2.37548 2.92196 3.04381 3.36626 3.63956 3.90773 3.98079 3.98344 4.11090 4.14766 4.25782 4.44409 4.56357 4.68434 4.69546 4.75481 4.83672 4.89591 4.95296 4.98936 5.02984 5.20561 5.21652 5.28035 5.32031 5.32973 5.37091 5.40362 5.43715 5.49747 5.59503 5.63206 5.79610 5.98938 6.14996 6.60521 6.63123 7.14151 7.22786 7.26468 7.56874 8.81896 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.002530 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.133731 B =11064.744478 C =12344.681514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.163 3.837 3 C -0.144 4.144 4 C -0.163 4.163 5 N -0.702 5.702 6 C 0.553 3.447 7 O -0.575 6.575 8 C -0.139 4.139 9 C -0.094 4.094 10 C -0.094 4.094 11 C -0.112 4.112 12 C 0.141 3.859 13 N -0.672 5.672 14 C 0.687 3.313 15 O -0.628 6.628 16 N -0.713 5.713 17 C 0.285 3.715 18 C -0.555 4.555 19 H 0.088 0.912 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.990 3.010 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.254 1.254 26 C -0.101 4.101 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.165 0.835 40 H 0.426 0.574 41 H 0.409 0.591 42 H -0.013 1.013 43 H -0.016 1.016 44 H 0.269 0.731 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.860 22.654 2.401 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.078 3.922 3 C -0.202 4.202 4 C -0.221 4.221 5 N -0.356 5.356 6 C 0.341 3.659 7 O -0.456 6.456 8 C -0.143 4.143 9 C -0.113 4.113 10 C -0.112 4.112 11 C -0.132 4.132 12 C 0.046 3.954 13 N -0.322 5.322 14 C 0.387 3.613 15 O -0.509 6.509 16 N -0.367 5.367 17 C 0.162 3.838 18 C -0.593 4.593 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.812 3.188 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.177 1.177 26 C -0.123 4.123 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.254 0.746 37 H 0.184 0.816 38 H 0.199 0.801 39 H 0.182 0.818 40 H 0.265 0.735 41 H 0.245 0.755 42 H 0.004 0.996 43 H 0.002 0.998 44 H 0.078 0.922 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.443 22.793 1.218 29.984 hybrid contribution -0.426 -1.644 0.248 1.716 sum 19.017 21.149 1.466 28.479 Atomic orbital electron populations 1.22227 0.95574 1.01783 1.02766 1.20518 0.93607 0.93725 0.84335 1.22032 1.02473 0.91355 1.04312 1.22202 1.01398 1.00897 0.97584 1.45927 1.53412 1.10457 1.25797 1.18589 0.79416 0.82549 0.85356 1.90751 1.39313 1.67583 1.47914 1.19867 1.03094 0.94136 0.97209 1.21611 0.95344 1.00986 0.93347 1.21406 0.99251 0.93112 0.97431 1.21513 0.98483 0.95482 0.97741 1.17733 0.99405 0.84032 0.94265 1.42377 1.14799 1.10279 1.64783 1.16369 0.82281 0.82777 0.79889 1.90917 1.54096 1.58353 1.47518 1.45285 1.19826 1.11123 1.60472 1.18459 0.78476 0.93728 0.93168 1.21590 1.02649 0.96580 1.38433 0.89432 1.26130 0.94844 1.04286 0.94553 1.70161 1.06460 1.39714 1.40765 0.85089 0.78843 0.76871 0.77978 1.19416 1.21061 1.17728 1.21265 0.99008 0.95333 0.96648 0.92128 0.90175 0.94548 0.90302 0.89631 0.90671 0.94362 0.90265 0.91636 0.74612 0.81642 0.80117 0.81770 0.73503 0.75541 0.99553 0.99835 0.92209 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 8.40 71.98 0.60 -3.11 16 2 C 0.16 2.95 1.06 3.60 0.00 2.95 16 3 C -0.14 -1.26 8.59 71.98 0.62 -0.65 16 4 C -0.16 -3.38 8.40 71.98 0.60 -2.77 16 5 N -0.70 -13.55 5.06 -425.75 -2.15 -15.70 16 6 C 0.55 16.86 7.19 86.79 0.62 17.48 16 7 O -0.58 -23.89 12.55 -3.87 -0.05 -23.94 16 8 C -0.14 -3.97 5.87 -20.11 -0.12 -4.09 16 9 C -0.09 -1.53 9.54 22.54 0.21 -1.32 16 10 C -0.09 -1.24 10.02 22.21 0.22 -1.01 16 11 C -0.11 -2.04 9.96 22.44 0.22 -1.82 16 12 C 0.14 4.19 6.29 38.10 0.24 4.43 16 13 N -0.67 -20.93 5.34 -317.27 -1.70 -22.63 16 14 C 0.69 30.43 8.41 179.06 1.51 31.94 16 15 O -0.63 -34.98 13.78 -4.01 -0.06 -35.03 16 16 N -0.71 -31.75 5.55 -482.28 -2.68 -34.42 16 17 C 0.28 16.36 5.43 85.63 0.46 16.82 16 18 C -0.55 -30.82 9.28 25.60 0.24 -30.58 16 19 H 0.09 4.33 7.60 -2.91 -0.02 4.31 16 20 C 0.00 0.08 5.46 84.65 0.46 0.54 16 21 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 22 Si 0.99 43.01 29.54 68.60 2.03 45.04 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 26 C -0.10 -3.71 8.23 22.66 0.19 -3.52 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.04 1.16 6.17 -2.39 -0.01 1.15 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.04 1.14 6.16 -2.39 -0.01 1.12 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.42 4.50 6.50 -92.70 -0.60 3.90 16 37 H 0.17 1.17 6.40 -2.91 -0.02 1.15 16 38 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.43 9.11 8.84 -92.71 -0.82 8.29 16 41 H 0.41 14.51 8.34 -92.71 -0.77 13.73 16 42 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.10 4.78 5.82 -2.91 -0.02 4.77 16 Total: -1.00 -90.91 372.08 0.62 -90.28 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -1.15 Total: 28.76 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.09 Total: 25.31 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -6.24 Total: -130.42 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -0.10 Total: -58.97 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -90.91 0.62 -90.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488381095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.959 kcal (2) G-P(sol) polarization free energy of solvation -90.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds