Wall clock time and date at job start Tue Mar 31 2020 14:02:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52996 * 109.47358 * 2 1
4 4 N 1.46509 * 109.46564 * 119.99619 * 2 1 3
5 5 C 1.46504 * 119.99738 * 119.92576 * 4 2 1
6 6 C 1.50706 * 109.46778 * 269.99546 * 5 4 2
7 7 H 1.07996 * 119.99996 * 0.02562 * 6 5 4
8 8 C 1.37871 * 119.99462 * 180.02562 * 6 5 4
9 9 N 1.31515 * 120.00302 * 359.97438 * 8 6 5
10 10 Si 1.86805 * 119.99707 * 180.02562 * 8 6 5
11 11 H 1.48501 * 109.47218 * 89.99753 * 10 8 6
12 12 H 1.48503 * 109.47171 * 209.99928 * 10 8 6
13 13 H 1.48500 * 109.47013 * 329.99592 * 10 8 6
14 14 C 1.34775 * 119.99867 * 299.92123 * 4 2 1
15 15 O 1.21272 * 120.00059 * 5.29156 * 14 4 2
16 16 C 1.50698 * 119.99669 * 185.29584 * 14 4 2
17 17 C 1.53783 * 113.61647 * 158.12261 * 16 14 4
18 18 C 1.53780 * 87.08426 * 89.19644 * 17 16 14
19 19 C 1.50698 * 113.61503 * 139.98283 * 18 17 16
20 20 C 1.38267 * 119.98604 * 119.99815 * 19 18 17
21 21 C 1.38222 * 120.05156 * 180.02562 * 20 19 18
22 22 C 1.38223 * 120.02331 * 359.97438 * 21 20 19
23 23 C 1.38440 * 119.97510 * 0.02562 * 22 21 20
24 24 F 1.35093 * 120.02517 * 179.97438 * 23 22 21
25 25 C 1.38172 * 119.98600 * 300.02408 * 19 18 17
26 26 C 1.53786 * 87.08115 * 25.43228 * 18 17 16
27 27 H 1.09004 * 109.47470 * 306.82631 * 1 2 3
28 28 H 1.09005 * 109.46939 * 66.82473 * 1 2 3
29 29 H 1.09001 * 109.47686 * 186.82304 * 1 2 3
30 30 H 1.09004 * 109.47351 * 239.99051 * 2 1 3
31 31 H 1.08999 * 109.47256 * 174.66606 * 3 2 1
32 32 H 1.09003 * 109.46872 * 294.66184 * 3 2 1
33 33 H 1.08995 * 109.47209 * 54.65972 * 3 2 1
34 34 H 1.09001 * 109.46971 * 29.99641 * 5 4 2
35 35 H 1.08998 * 109.46891 * 149.99787 * 5 4 2
36 36 H 0.97009 * 119.99809 * 180.02562 * 9 8 6
37 37 H 1.08999 * 112.85328 * 26.92247 * 16 14 4
38 38 H 1.09004 * 113.61183 * 334.64633 * 17 16 14
39 39 H 1.09002 * 113.69336 * 203.75984 * 17 16 14
40 40 H 1.09000 * 113.61471 * 270.80532 * 18 17 16
41 41 H 1.07998 * 119.97570 * 0.02562 * 20 19 18
42 42 H 1.07997 * 119.98710 * 179.70083 * 21 20 19
43 43 H 1.07997 * 120.00904 * 179.97438 * 22 21 20
44 44 H 1.08001 * 120.01580 * 359.97438 * 25 19 18
45 45 H 1.09000 * 113.60958 * 89.11003 * 26 18 17
46 46 H 1.08991 * 113.61506 * 220.01814 * 26 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0182 -0.6906 1.1963
5 6 2.8591 -1.8827 1.0620
6 6 1.9863 -3.1105 1.0171
7 1 0.9127 -3.0125 1.0817
8 6 2.5585 -4.3588 0.8935
9 7 3.8659 -4.4780 0.8143
10 14 1.4767 -5.8807 0.8371
11 1 1.1162 -6.1798 -0.5721
12 1 2.2134 -7.0334 1.4149
13 1 0.2406 -5.6387 1.6237
14 6 1.6938 -0.2291 2.4203
15 8 0.9210 0.6986 2.5334
16 6 2.2916 -0.8659 3.6484
17 6 2.2750 0.0470 4.8859
18 6 0.8857 -0.5336 5.1983
19 6 0.6575 -0.7976 6.6644
20 6 -0.3733 -0.1594 7.3292
21 6 -0.5834 -0.4002 8.6740
22 6 0.2366 -1.2797 9.3555
23 6 1.2690 -1.9192 8.6909
24 9 2.0714 -2.7786 9.3561
25 6 1.4789 -1.6768 7.3437
26 6 1.3155 -1.7804 4.4074
27 1 -0.3634 0.6160 0.8226
28 1 -0.3633 0.4045 -0.9448
29 1 -0.3634 -1.0204 0.1221
30 1 1.8934 -0.5140 -0.8899
31 1 3.1258 1.4439 0.0955
32 1 1.7568 1.9279 -0.9340
33 1 1.6008 1.9831 0.8383
34 1 3.4399 -1.8159 0.1420
35 1 3.5351 -1.9485 1.9145
36 1 4.2684 -5.3563 0.7270
37 1 3.2615 -1.3252 3.4576
38 1 2.2598 1.1098 4.6442
39 1 3.0316 -0.2075 5.6281
40 1 0.0676 0.0182 4.7353
41 1 -1.0147 0.5276 6.7974
42 1 -1.3858 0.1025 9.1934
43 1 0.0725 -1.4673 10.4063
44 1 2.2840 -2.1751 6.8242
45 1 1.8102 -2.5357 5.0181
46 1 0.5258 -2.1929 3.7796
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000522590592.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:02:23
Heat of formation + Delta-G solvation = -44.390899 kcal
Electronic energy + Delta-G solvation = -27304.298032 eV
Core-core repulsion = 23494.681595 eV
Total energy + Delta-G solvation = -3809.616437 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.169 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-48.89537 -40.46852 -39.02203 -37.15106 -35.13319 -33.15734 -31.71126 -30.94488
-30.52589 -27.04946 -26.62198 -25.88949 -25.34836 -23.35895 -22.81628 -22.33968
-21.09232 -19.66729 -17.65602 -17.35747 -16.49982 -16.29093 -16.11987 -15.99885
-15.59798 -15.48626 -14.62348 -14.59500 -14.26411 -14.06363 -13.80437 -13.31323
-13.11582 -12.96584 -12.63403 -12.51788 -12.24209 -12.07221 -11.95901 -11.80337
-11.64078 -11.50715 -11.36927 -11.28933 -10.98255 -10.91948 -10.77626 -10.65473
-10.41629 -10.12918 -10.09404 -9.82302 -9.63175 -8.92814 -8.74686 -8.62978
-8.51073 -7.68524 -6.18276 -4.24798 1.13561 1.17390 3.21915 3.29419
3.30751 3.37549 3.54060 3.88845 4.20420 4.33150 4.64731 4.71912
4.95179 5.00490 5.09272 5.14627 5.16750 5.22749 5.32173 5.35487
5.48557 5.69438 5.71812 5.85437 5.90732 5.95955 5.99418 6.03355
6.07264 6.15691 6.18019 6.21148 6.27599 6.31588 6.34699 6.45030
6.46557 6.59690 6.73299 6.77949 6.82198 6.87616 6.87690 7.20744
7.60246 7.77519 8.06605 8.38898 8.81005 9.06698 9.42990 10.88446
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.010791 B = 0.004278 C = 0.003379
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2594.130194 B = 6544.270101 C = 8284.913929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.148 3.852
3 C -0.164 4.164
4 N -0.589 5.589
5 C 0.236 3.764
6 C -0.531 4.531
7 H 0.060 0.940
8 C 0.066 3.934
9 N -0.892 5.892
10 Si 0.892 3.108
11 H -0.280 1.280
12 H -0.285 1.285
13 H -0.273 1.273
14 C 0.538 3.462
15 O -0.569 6.569
16 C -0.131 4.131
17 C -0.108 4.108
18 C -0.078 4.078
19 C -0.030 4.030
20 C -0.128 4.128
21 C -0.092 4.092
22 C -0.167 4.167
23 C 0.098 3.902
24 F -0.143 7.143
25 C -0.152 4.152
26 C -0.101 4.101
27 H 0.073 0.927
28 H 0.048 0.952
29 H 0.056 0.944
30 H 0.082 0.918
31 H 0.049 0.951
32 H 0.054 0.946
33 H 0.071 0.929
34 H 0.033 0.967
35 H 0.041 0.959
36 H 0.264 0.736
37 H 0.103 0.897
38 H 0.075 0.925
39 H 0.083 0.917
40 H 0.111 0.889
41 H 0.129 0.871
42 H 0.129 0.871
43 H 0.130 0.870
44 H 0.138 0.862
45 H 0.088 0.912
46 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.761 8.218 10.364 14.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.044 3.956
3 C -0.222 4.222
4 N -0.319 5.319
5 C 0.116 3.884
6 C -0.569 4.569
7 H 0.078 0.922
8 C -0.137 4.137
9 N -0.531 5.531
10 Si 0.720 3.280
11 H -0.206 1.206
12 H -0.211 1.211
13 H -0.198 1.198
14 C 0.326 3.674
15 O -0.450 6.450
16 C -0.152 4.152
17 C -0.145 4.145
18 C -0.096 4.096
19 C -0.030 4.030
20 C -0.146 4.146
21 C -0.110 4.110
22 C -0.186 4.186
23 C 0.079 3.921
24 F -0.121 7.121
25 C -0.170 4.170
26 C -0.138 4.138
27 H 0.092 0.908
28 H 0.067 0.933
29 H 0.075 0.925
30 H 0.100 0.900
31 H 0.069 0.931
32 H 0.073 0.927
33 H 0.090 0.910
34 H 0.051 0.949
35 H 0.059 0.941
36 H 0.074 0.926
37 H 0.121 0.879
38 H 0.094 0.906
39 H 0.101 0.899
40 H 0.129 0.871
41 H 0.146 0.854
42 H 0.147 0.853
43 H 0.148 0.852
44 H 0.156 0.844
45 H 0.106 0.894
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -4.953 8.505 10.386 14.309
hybrid contribution -0.233 -1.411 -0.054 1.431
sum -5.186 7.095 10.333 13.564
Atomic orbital electron populations
1.22167 0.95651 1.02555 1.01659 1.20822 0.94264 0.92180 0.88325
1.22176 1.00819 0.97031 1.02157 1.48305 1.50481 1.28979 1.04150
1.19505 0.89905 0.80684 0.98313 1.21461 0.93652 0.90715 1.51114
0.92173 1.24907 0.94951 0.98965 0.94867 1.69919 1.09291 1.24293
1.49588 0.86578 0.80594 0.82448 0.78376 1.20579 1.21078 1.19764
1.19788 0.80826 0.82464 0.84320 1.90505 1.36623 1.30990 1.86908
1.22330 1.01731 0.98309 0.92816 1.22850 0.95608 0.99921 0.96169
1.21766 0.99274 0.99060 0.89466 1.19797 0.93412 0.93828 0.95947
1.21187 0.98315 1.00632 0.94466 1.20971 0.98596 0.97007 0.94389
1.21074 0.96573 1.00073 1.00840 1.17705 0.91531 0.92121 0.90769
1.91490 1.72112 1.67897 1.80638 1.21101 1.02306 1.01074 0.92545
1.22789 0.98729 0.95081 0.97236 0.90767 0.93287 0.92517 0.90018
0.93141 0.92705 0.91049 0.94925 0.94145 0.92581 0.87869 0.90591
0.89858 0.87123 0.85350 0.85292 0.85200 0.84400 0.89356 0.90434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.82 8.99 37.16 0.33 -2.49 16
2 C 0.15 2.69 3.28 -67.93 -0.22 2.46 16
3 C -0.16 -2.61 9.04 37.16 0.34 -2.27 16
4 N -0.59 -11.93 2.41 -167.46 -0.40 -12.33 16
5 C 0.24 5.43 5.02 -5.19 -0.03 5.40 16
6 C -0.53 -13.41 9.39 -34.44 -0.32 -13.73 16
7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16
8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16
9 N -0.89 -24.19 13.29 55.43 0.74 -23.46 16
10 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16
11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
14 C 0.54 10.46 6.42 -10.99 -0.07 10.39 16
15 O -0.57 -11.43 11.63 5.56 0.06 -11.36 16
16 C -0.13 -2.26 3.64 -90.96 -0.33 -2.59 16
17 C -0.11 -1.56 6.89 -25.92 -0.18 -1.74 16
18 C -0.08 -1.12 3.57 -90.96 -0.33 -1.44 16
19 C -0.03 -0.39 5.29 -104.64 -0.55 -0.94 16
20 C -0.13 -1.46 9.71 -39.58 -0.38 -1.84 16
21 C -0.09 -0.92 10.04 -39.59 -0.40 -1.32 16
22 C -0.17 -1.81 10.03 -39.51 -0.40 -2.21 16
23 C 0.10 1.25 7.30 -39.42 -0.29 0.96 16
24 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16
25 C -0.15 -1.99 8.59 -39.52 -0.34 -2.32 16
26 C -0.10 -1.65 7.04 -25.91 -0.18 -1.83 16
27 H 0.07 1.37 6.24 -51.93 -0.32 1.04 16
28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
30 H 0.08 1.49 7.79 -51.93 -0.40 1.09 16
31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.07 1.23 6.50 -51.93 -0.34 0.89 16
34 H 0.03 0.80 7.92 -51.93 -0.41 0.39 16
35 H 0.04 0.96 5.76 -51.93 -0.30 0.66 16
36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16
37 H 0.10 1.87 6.06 -51.93 -0.31 1.56 16
38 H 0.08 1.14 7.81 -51.93 -0.41 0.73 16
39 H 0.08 1.08 7.72 -51.93 -0.40 0.68 16
40 H 0.11 1.72 7.32 -51.93 -0.38 1.34 16
41 H 0.13 1.29 8.05 -52.49 -0.42 0.87 16
42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
43 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16
44 H 0.14 1.77 6.66 -52.49 -0.35 1.42 16
45 H 0.09 1.36 6.31 -51.93 -0.33 1.03 16
46 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16
LS Contribution 372.18 15.07 5.61 5.61
Total: -1.00 -27.32 372.18 -9.30 -36.63
By element:
Atomic # 1 Polarization: 12.21 SS G_CDS: -6.88 Total: 5.33 kcal
Atomic # 6 Polarization: -10.46 SS G_CDS: -3.45 Total: -13.91 kcal
Atomic # 7 Polarization: -36.12 SS G_CDS: 0.33 Total: -35.79 kcal
Atomic # 8 Polarization: -11.43 SS G_CDS: 0.06 Total: -11.36 kcal
Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal
Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -27.32 -9.30 -36.63 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000522590592.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.765 kcal
(2) G-P(sol) polarization free energy of solvation -27.325 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.090 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.391 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds