Wall clock time and date at job start Tue Mar 31 2020 14:02:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52996 * 109.47358 * 2 1
4 4 N 1.46509 * 109.46564 * 119.99619 * 2 1 3
5 5 C 1.46504 * 119.99738 * 119.92576 * 4 2 1
6 6 C 1.50706 * 109.46778 * 269.99546 * 5 4 2
7 7 H 1.07996 * 119.99996 * 0.02562 * 6 5 4
8 8 C 1.37871 * 119.99462 * 180.02562 * 6 5 4
9 9 N 1.31515 * 120.00302 * 359.97438 * 8 6 5
10 10 Si 1.86805 * 119.99707 * 180.02562 * 8 6 5
11 11 H 1.48501 * 109.47218 * 89.99753 * 10 8 6
12 12 H 1.48503 * 109.47171 * 209.99928 * 10 8 6
13 13 H 1.48500 * 109.47013 * 329.99592 * 10 8 6
14 14 C 1.34775 * 119.99867 * 299.92123 * 4 2 1
15 15 O 1.21272 * 120.00059 * 5.29156 * 14 4 2
16 16 C 1.50698 * 119.99669 * 185.29584 * 14 4 2
17 17 C 1.53783 * 113.61647 * 158.12261 * 16 14 4
18 18 C 1.53780 * 87.08426 * 89.19644 * 17 16 14
19 19 C 1.50698 * 113.61503 * 139.98283 * 18 17 16
20 20 C 1.38267 * 119.98604 * 119.99815 * 19 18 17
21 21 C 1.38222 * 120.05156 * 180.02562 * 20 19 18
22 22 C 1.38223 * 120.02331 * 359.97438 * 21 20 19
23 23 C 1.38440 * 119.97510 * 0.02562 * 22 21 20
24 24 F 1.35093 * 120.02517 * 179.97438 * 23 22 21
25 25 C 1.38172 * 119.98600 * 300.02408 * 19 18 17
26 26 C 1.53786 * 87.08115 * 25.43228 * 18 17 16
27 27 H 1.09004 * 109.47470 * 306.82631 * 1 2 3
28 28 H 1.09005 * 109.46939 * 66.82473 * 1 2 3
29 29 H 1.09001 * 109.47686 * 186.82304 * 1 2 3
30 30 H 1.09004 * 109.47351 * 239.99051 * 2 1 3
31 31 H 1.08999 * 109.47256 * 174.66606 * 3 2 1
32 32 H 1.09003 * 109.46872 * 294.66184 * 3 2 1
33 33 H 1.08995 * 109.47209 * 54.65972 * 3 2 1
34 34 H 1.09001 * 109.46971 * 29.99641 * 5 4 2
35 35 H 1.08998 * 109.46891 * 149.99787 * 5 4 2
36 36 H 0.97009 * 119.99809 * 180.02562 * 9 8 6
37 37 H 1.08999 * 112.85328 * 26.92247 * 16 14 4
38 38 H 1.09004 * 113.61183 * 334.64633 * 17 16 14
39 39 H 1.09002 * 113.69336 * 203.75984 * 17 16 14
40 40 H 1.09000 * 113.61471 * 270.80532 * 18 17 16
41 41 H 1.07998 * 119.97570 * 0.02562 * 20 19 18
42 42 H 1.07997 * 119.98710 * 179.70083 * 21 20 19
43 43 H 1.07997 * 120.00904 * 179.97438 * 22 21 20
44 44 H 1.08001 * 120.01580 * 359.97438 * 25 19 18
45 45 H 1.09000 * 113.60958 * 89.11003 * 26 18 17
46 46 H 1.08991 * 113.61506 * 220.01814 * 26 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0182 -0.6906 1.1963
5 6 2.8591 -1.8827 1.0620
6 6 1.9863 -3.1105 1.0171
7 1 0.9127 -3.0125 1.0817
8 6 2.5585 -4.3588 0.8935
9 7 3.8659 -4.4780 0.8143
10 14 1.4767 -5.8807 0.8371
11 1 1.1162 -6.1798 -0.5721
12 1 2.2134 -7.0334 1.4149
13 1 0.2406 -5.6387 1.6237
14 6 1.6938 -0.2291 2.4203
15 8 0.9210 0.6986 2.5334
16 6 2.2916 -0.8659 3.6484
17 6 2.2750 0.0470 4.8859
18 6 0.8857 -0.5336 5.1983
19 6 0.6575 -0.7976 6.6644
20 6 -0.3733 -0.1594 7.3292
21 6 -0.5834 -0.4002 8.6740
22 6 0.2366 -1.2797 9.3555
23 6 1.2690 -1.9192 8.6909
24 9 2.0714 -2.7786 9.3561
25 6 1.4789 -1.6768 7.3437
26 6 1.3155 -1.7804 4.4074
27 1 -0.3634 0.6160 0.8226
28 1 -0.3633 0.4045 -0.9448
29 1 -0.3634 -1.0204 0.1221
30 1 1.8934 -0.5140 -0.8899
31 1 3.1258 1.4439 0.0955
32 1 1.7568 1.9279 -0.9340
33 1 1.6008 1.9831 0.8383
34 1 3.4399 -1.8159 0.1420
35 1 3.5351 -1.9485 1.9145
36 1 4.2684 -5.3563 0.7270
37 1 3.2615 -1.3252 3.4576
38 1 2.2598 1.1098 4.6442
39 1 3.0316 -0.2075 5.6281
40 1 0.0676 0.0182 4.7353
41 1 -1.0147 0.5276 6.7974
42 1 -1.3858 0.1025 9.1934
43 1 0.0725 -1.4673 10.4063
44 1 2.2840 -2.1751 6.8242
45 1 1.8102 -2.5357 5.0181
46 1 0.5258 -2.1929 3.7796
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000522590592.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:02:22
Heat of formation + Delta-G solvation = -55.014119 kcal
Electronic energy + Delta-G solvation = -27304.758689 eV
Core-core repulsion = 23494.681595 eV
Total energy + Delta-G solvation = -3810.077095 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.169 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-49.88158 -41.81952 -40.20909 -38.38725 -36.73948 -34.98642 -33.27320 -32.05229
-31.43850 -28.91667 -28.00201 -27.14429 -26.63297 -24.90005 -24.25213 -23.42629
-22.31830 -20.97236 -19.05062 -18.62083 -18.40167 -17.57744 -17.23318 -17.02474
-16.96662 -16.58556 -16.35557 -16.00764 -15.71272 -15.37480 -14.74052 -14.62046
-14.41636 -14.32274 -14.06806 -13.87799 -13.70437 -13.52451 -13.34193 -13.19848
-12.89869 -12.87392 -12.73356 -12.67449 -12.55167 -12.36519 -12.18530 -12.10004
-12.00192 -11.68644 -11.63076 -11.40146 -11.06766 -10.59899 -10.21173 -9.85216
-9.57269 -9.37338 -8.18775 -6.31783 0.21397 0.27685 1.38639 1.41588
1.49897 1.79965 2.31200 2.45304 2.62513 3.11581 3.26398 3.58457
3.60821 3.81681 3.83186 3.89628 4.02474 4.11307 4.18916 4.29679
4.31120 4.40533 4.42832 4.49495 4.67547 4.75384 4.76107 4.80089
4.90389 4.95853 4.97828 5.03355 5.03915 5.07467 5.09602 5.16803
5.20219 5.24985 5.31916 5.36541 5.44618 5.47878 5.67994 5.69891
5.98095 5.98536 6.09519 6.63605 6.88338 7.36260 7.49907 8.86485
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.010791 B = 0.004278 C = 0.003379
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2594.130194 B = 6544.270101 C = 8284.913929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.136 3.864
3 C -0.151 4.151
4 N -0.596 5.596
5 C 0.251 3.749
6 C -0.534 4.534
7 H 0.049 0.951
8 C 0.025 3.975
9 N -0.920 5.920
10 Si 0.947 3.053
11 H -0.275 1.275
12 H -0.281 1.281
13 H -0.272 1.272
14 C 0.534 3.466
15 O -0.574 6.574
16 C -0.140 4.140
17 C -0.094 4.094
18 C -0.060 4.060
19 C -0.044 4.044
20 C -0.130 4.130
21 C -0.083 4.083
22 C -0.161 4.161
23 C 0.078 3.922
24 F -0.151 7.151
25 C -0.162 4.162
26 C -0.101 4.101
27 H 0.063 0.937
28 H 0.078 0.922
29 H 0.034 0.966
30 H 0.078 0.922
31 H 0.048 0.952
32 H 0.083 0.917
33 H 0.058 0.942
34 H 0.016 0.984
35 H 0.032 0.968
36 H 0.266 0.734
37 H 0.090 0.910
38 H 0.074 0.926
39 H 0.100 0.900
40 H 0.100 0.900
41 H 0.142 0.858
42 H 0.164 0.836
43 H 0.154 0.846
44 H 0.132 0.868
45 H 0.095 0.905
46 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.117 9.039 11.537 15.882
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.033 3.967
3 C -0.209 4.209
4 N -0.326 5.326
5 C 0.130 3.870
6 C -0.572 4.572
7 H 0.067 0.933
8 C -0.175 4.175
9 N -0.560 5.560
10 Si 0.773 3.227
11 H -0.201 1.201
12 H -0.207 1.207
13 H -0.197 1.197
14 C 0.323 3.677
15 O -0.456 6.456
16 C -0.161 4.161
17 C -0.131 4.131
18 C -0.078 4.078
19 C -0.044 4.044
20 C -0.148 4.148
21 C -0.101 4.101
22 C -0.179 4.179
23 C 0.059 3.941
24 F -0.130 7.130
25 C -0.181 4.181
26 C -0.139 4.139
27 H 0.082 0.918
28 H 0.097 0.903
29 H 0.053 0.947
30 H 0.096 0.904
31 H 0.067 0.933
32 H 0.102 0.898
33 H 0.077 0.923
34 H 0.034 0.966
35 H 0.050 0.950
36 H 0.075 0.925
37 H 0.108 0.892
38 H 0.093 0.907
39 H 0.119 0.881
40 H 0.118 0.882
41 H 0.160 0.840
42 H 0.182 0.818
43 H 0.172 0.828
44 H 0.150 0.850
45 H 0.114 0.886
46 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -6.320 9.344 11.556 16.149
hybrid contribution 0.155 -1.629 -0.417 1.689
sum -6.165 7.715 11.140 14.887
Atomic orbital electron populations
1.22062 0.94952 1.01102 1.02846 1.21075 0.94866 0.93357 0.87410
1.22060 1.00462 0.95254 1.03161 1.48314 1.50466 1.28484 1.05346
1.19130 0.89656 0.81250 0.96961 1.21603 0.93271 0.91757 1.50603
0.93255 1.25544 0.95937 1.01394 0.94663 1.70002 1.10526 1.24921
1.50521 0.85712 0.79061 0.79480 0.78411 1.20099 1.20678 1.19708
1.20100 0.80631 0.82342 0.84579 1.90492 1.36865 1.31211 1.87022
1.22375 1.01062 0.99540 0.93168 1.22807 0.96351 0.99141 0.94813
1.21496 0.98689 0.97210 0.90445 1.19651 0.94707 0.95083 0.94946
1.21434 0.97679 1.00341 0.95326 1.21345 0.98819 0.96166 0.93740
1.21417 0.95412 0.99090 1.02006 1.17928 0.92452 0.92857 0.90825
1.91465 1.72539 1.68314 1.80707 1.21091 1.02506 1.01475 0.93038
1.22783 0.97871 0.95998 0.97269 0.91840 0.90271 0.94666 0.90362
0.93328 0.89793 0.92274 0.96595 0.95002 0.92455 0.89152 0.90748
0.88124 0.88189 0.83984 0.81801 0.82840 0.85030 0.88636 0.92933
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.20 8.99 71.98 0.65 -4.55 16
2 C 0.14 4.92 3.28 44.99 0.15 5.07 16
3 C -0.15 -4.66 9.04 71.98 0.65 -4.01 16
4 N -0.60 -24.67 2.41 -802.12 -1.93 -26.60 16
5 C 0.25 11.93 5.02 85.63 0.43 12.36 16
6 C -0.53 -27.58 9.39 25.60 0.24 -27.34 16
7 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16
8 C 0.02 1.30 5.46 84.65 0.46 1.76 16
9 N -0.92 -50.56 13.29 21.44 0.28 -50.27 16
10 Si 0.95 42.08 29.54 68.60 2.03 44.11 16
11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
14 C 0.53 21.19 6.42 87.66 0.56 21.75 16
15 O -0.57 -23.17 11.63 -3.01 -0.03 -23.20 16
16 C -0.14 -4.98 3.64 -11.01 -0.04 -5.02 16
17 C -0.09 -2.69 6.89 31.12 0.21 -2.48 16
18 C -0.06 -1.72 3.57 -11.01 -0.04 -1.76 16
19 C -0.04 -1.09 5.29 -19.87 -0.11 -1.20 16
20 C -0.13 -2.66 9.71 22.27 0.22 -2.45 16
21 C -0.08 -1.38 10.04 22.26 0.22 -1.16 16
22 C -0.16 -3.04 10.03 22.31 0.22 -2.81 16
23 C 0.08 1.90 7.30 22.38 0.16 2.07 16
24 F -0.15 -3.98 17.27 44.97 0.78 -3.21 16
25 C -0.16 -4.16 8.59 22.31 0.19 -3.97 16
26 C -0.10 -3.41 7.04 31.12 0.22 -3.19 16
27 H 0.06 2.31 6.24 -2.39 -0.01 2.29 16
28 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16
29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
30 H 0.08 2.86 7.79 -2.39 -0.02 2.84 16
31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
33 H 0.06 1.98 6.50 -2.39 -0.02 1.96 16
34 H 0.02 0.81 7.92 -2.39 -0.02 0.79 16
35 H 0.03 1.57 5.76 -2.39 -0.01 1.56 16
36 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16
37 H 0.09 3.42 6.06 -2.39 -0.01 3.40 16
38 H 0.07 2.18 7.81 -2.39 -0.02 2.16 16
39 H 0.10 2.54 7.72 -2.39 -0.02 2.52 16
40 H 0.10 3.09 7.32 -2.39 -0.02 3.07 16
41 H 0.14 2.49 8.05 -2.91 -0.02 2.47 16
42 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16
43 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16
44 H 0.13 3.41 6.66 -2.91 -0.02 3.40 16
45 H 0.10 3.03 6.31 -2.39 -0.02 3.02 16
46 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16
Total: -1.00 -58.78 372.18 6.51 -52.28
By element:
Atomic # 1 Polarization: 22.86 SS G_CDS: 0.98 Total: 23.83 kcal
Atomic # 6 Polarization: -21.35 SS G_CDS: 4.41 Total: -16.94 kcal
Atomic # 7 Polarization: -75.22 SS G_CDS: -1.65 Total: -76.87 kcal
Atomic # 8 Polarization: -23.17 SS G_CDS: -0.03 Total: -23.20 kcal
Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.21 kcal
Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal
Total: -58.78 6.51 -52.28 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000522590592.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.735 kcal
(2) G-P(sol) polarization free energy of solvation -58.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.505 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds