Wall clock time and date at job start Tue Mar 31 2020 13:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47476 * 2 1 4 4 H 1.08994 * 109.47311 * 180.42985 * 3 2 1 5 5 C 1.50707 * 109.47016 * 300.42522 * 3 2 1 6 6 H 1.08005 * 119.99688 * 120.00296 * 5 3 2 7 7 C 1.37875 * 120.00316 * 299.99845 * 5 3 2 8 8 N 1.31513 * 119.99625 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00383 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46947 * 89.99850 * 9 7 5 11 11 H 1.48496 * 109.47443 * 210.00380 * 9 7 5 12 12 H 1.48510 * 109.46839 * 330.00225 * 9 7 5 13 13 N 1.46898 * 109.47282 * 60.42404 * 3 2 1 14 14 C 1.46894 * 110.99746 * 80.56448 * 13 3 2 15 15 H 1.09002 * 109.47474 * 329.52223 * 14 13 3 16 16 C 1.52998 * 109.47367 * 89.52069 * 14 13 3 17 17 C 1.50704 * 109.47314 * 209.52149 * 14 13 3 18 18 O 1.21233 * 119.99559 * 0.02562 * 17 14 13 19 19 N 1.34772 * 120.00244 * 179.97438 * 17 14 13 20 20 C 1.34777 * 120.00194 * 180.02562 * 19 17 14 21 21 O 1.21545 * 120.00042 * 0.02562 * 20 19 17 22 22 N 1.34772 * 120.00194 * 179.97438 * 20 19 17 23 23 C 1.39938 * 120.00101 * 185.12689 * 22 20 19 24 24 C 1.38865 * 120.06865 * 214.15632 * 23 22 20 25 25 C 1.38116 * 119.92633 * 179.79471 * 24 23 22 26 26 C 1.38278 * 120.07041 * 0.45527 * 25 24 23 27 27 C 1.38278 * 120.14174 * 359.79847 * 26 25 24 28 28 C 1.38110 * 120.06988 * 359.96837 * 27 26 25 29 29 H 1.09005 * 109.46452 * 295.14590 * 1 2 3 30 30 H 1.08997 * 109.47072 * 55.14199 * 1 2 3 31 31 H 1.08993 * 109.47716 * 175.14919 * 1 2 3 32 32 H 1.09004 * 109.46188 * 240.00114 * 2 1 3 33 33 H 1.08997 * 109.47402 * 120.00817 * 2 1 3 34 34 H 0.97000 * 120.00048 * 180.02562 * 8 7 5 35 35 H 1.00900 * 111.00311 * 204.51800 * 13 3 2 36 36 H 1.08994 * 109.47133 * 300.00152 * 16 14 13 37 37 H 1.09005 * 109.46625 * 60.00205 * 16 14 13 38 38 H 1.09003 * 109.47247 * 179.97438 * 16 14 13 39 39 H 0.97004 * 120.00427 * 0.02562 * 19 17 14 40 40 H 0.96996 * 120.00303 * 5.12785 * 22 20 19 41 41 H 1.08000 * 120.04261 * 0.02562 * 24 23 22 42 42 H 1.08000 * 119.96678 * 180.25226 * 25 24 23 43 43 H 1.07999 * 119.93365 * 179.77149 * 26 25 24 44 44 H 1.08003 * 119.96771 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.03497 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 -0.0077 5 6 1.5292 2.1559 -1.2252 6 1 0.9091 3.0338 -1.1196 7 6 1.8534 1.6880 -2.4810 8 7 2.6082 0.6187 -2.6095 9 14 1.2196 2.5719 -3.9996 10 1 2.1945 3.6149 -4.4082 11 1 1.0470 1.5953 -5.1049 12 1 -0.0867 3.2082 -3.6928 13 7 1.5589 2.1320 1.2045 14 6 2.3902 1.7993 2.3690 15 1 2.7875 0.7906 2.2556 16 6 3.5475 2.7948 2.4706 17 6 1.5538 1.8719 3.6205 18 8 0.3810 2.1708 3.5493 19 7 2.1093 1.6037 4.8188 20 6 1.3611 1.6681 5.9380 21 8 0.1854 1.9678 5.8667 22 7 1.9165 1.3994 7.1362 23 6 1.1179 1.3610 8.2848 24 6 1.6302 1.7874 9.5030 25 6 0.8381 1.7522 10.6339 26 6 -0.4607 1.2842 10.5557 27 6 -0.9721 0.8539 9.3452 28 6 -0.1867 0.8911 8.2097 29 1 -0.3632 0.4367 0.9304 30 1 -0.3633 0.5873 -0.8432 31 1 -0.3634 -1.0239 -0.0869 32 1 1.8932 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8367 0.2897 -3.4930 35 1 1.5222 3.1299 1.0596 36 1 4.1525 2.7423 1.5655 37 1 3.1502 3.8035 2.5841 38 1 4.1641 2.5482 3.3350 39 1 3.0475 1.3642 4.8758 40 1 2.8697 1.2325 7.2026 41 1 2.6457 2.1497 9.5654 42 1 1.2346 2.0875 11.5808 43 1 -1.0769 1.2542 11.4422 44 1 -1.9868 0.4885 9.2875 45 1 -0.5866 0.5545 7.2646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:41 Heat of formation + Delta-G solvation = -28.646705 kcal Electronic energy + Delta-G solvation = -26510.314017 eV Core-core repulsion = 22721.300261 eV Total energy + Delta-G solvation = -3789.013756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38872 -39.65361 -38.13400 -36.36101 -34.96745 -34.41443 -33.30201 -31.15103 -31.12075 -29.72456 -28.68679 -25.94954 -24.98975 -23.35925 -23.11959 -22.69543 -21.22771 -20.31564 -19.21094 -18.73634 -17.96524 -16.95508 -16.39549 -16.04115 -15.91374 -15.21520 -15.08267 -14.71948 -14.32259 -14.22946 -14.05864 -13.69998 -13.58574 -13.47818 -12.98439 -12.96947 -12.45079 -12.17722 -11.93236 -11.91874 -11.80786 -11.50528 -11.16695 -10.93216 -10.79814 -10.74223 -10.54079 -10.36518 -10.09189 -9.99832 -9.88716 -9.41617 -9.28309 -9.12104 -8.83915 -8.50459 -8.36804 -7.33393 -6.05822 -4.10263 1.05670 1.19528 2.19157 2.29406 3.27140 3.28545 3.36054 3.40961 3.64681 3.69773 4.38521 4.64888 4.73036 4.79263 4.94233 5.04372 5.17342 5.25056 5.27181 5.29824 5.35231 5.41357 5.72779 5.79305 5.90303 5.97238 6.08804 6.20544 6.24258 6.27469 6.35809 6.48651 6.55464 6.66531 6.81931 6.85918 7.18153 7.24943 7.35017 7.44270 7.70982 7.76249 7.80381 8.19242 8.21430 8.29774 8.32164 8.56867 8.97031 9.54514 11.00426 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.033370 B = 0.002377 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.870325 B =11776.650110 C =12075.696836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.662 5.662 14 C 0.074 3.926 15 H 0.104 0.896 16 C -0.176 4.176 17 C 0.515 3.485 18 O -0.439 6.439 19 N -0.692 5.692 20 C 0.693 3.307 21 O -0.513 6.513 22 N -0.685 5.685 23 C 0.165 3.835 24 C -0.148 4.148 25 C -0.102 4.102 26 C -0.139 4.139 27 C -0.099 4.099 28 C -0.119 4.119 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.089 0.911 33 H 0.007 0.993 34 H 0.261 0.739 35 H 0.340 0.660 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.407 0.593 40 H 0.407 0.593 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -0.449 23.705 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.293 5.293 14 C -0.041 4.041 15 H 0.122 0.878 16 C -0.235 4.235 17 C 0.300 3.700 18 O -0.302 6.302 19 N -0.360 5.360 20 C 0.393 3.607 21 O -0.383 6.383 22 N -0.335 5.335 23 C 0.071 3.929 24 C -0.169 4.169 25 C -0.121 4.121 26 C -0.158 4.158 27 C -0.118 4.118 28 C -0.140 4.140 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.107 0.893 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.241 0.759 40 H 0.243 0.757 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.341 -0.569 23.404 23.527 hybrid contribution 1.661 0.642 -0.936 2.012 sum 4.002 0.073 22.467 22.821 Atomic orbital electron populations 1.21465 0.97213 0.97491 1.01783 1.21488 0.95424 0.98057 0.99309 1.19203 0.92995 0.91485 0.85083 0.97940 1.21103 1.31620 1.12080 0.89983 0.92083 1.24862 0.95043 0.95000 0.98912 1.69873 1.36953 1.22751 1.23274 0.86545 0.79377 0.79305 0.82503 1.20827 1.21265 1.19785 1.60315 1.51553 1.14046 1.03424 1.21440 0.91168 1.01267 0.90273 0.87835 1.22476 0.98424 0.99725 1.02863 1.21567 0.89153 0.76129 0.83146 1.90800 1.15690 1.38683 1.85061 1.44468 1.15359 1.69083 1.07052 1.16223 0.85610 0.78618 0.80215 1.91093 1.13654 1.48681 1.84827 1.42776 1.11641 1.74050 1.04999 1.17511 0.91894 0.98311 0.85230 1.20851 1.01011 1.03063 0.91953 1.20913 0.94055 0.99319 0.97794 1.21140 0.95870 1.00895 0.97878 1.21077 0.99727 0.98867 0.92097 1.21254 0.93393 0.99503 0.99813 0.93639 0.92322 0.96822 0.89295 0.97462 0.92937 0.84070 0.90479 0.92043 0.92737 0.75851 0.75695 0.85734 0.85731 0.86023 0.85649 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.53 37.16 0.35 -2.50 16 2 C -0.10 -2.47 5.51 -26.73 -0.15 -2.61 16 3 C 0.22 5.16 2.14 -68.87 -0.15 5.01 16 4 H 0.00 0.07 7.48 -51.93 -0.39 -0.31 16 5 C -0.51 -13.31 7.23 -34.44 -0.25 -13.56 16 6 H 0.06 1.62 7.69 -52.48 -0.40 1.21 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.66 -13.61 4.89 -102.18 -0.50 -14.11 16 14 C 0.07 1.18 2.79 -68.87 -0.19 0.99 16 15 H 0.10 1.61 6.80 -51.93 -0.35 1.26 16 16 C -0.18 -2.22 9.05 37.16 0.34 -1.88 16 17 C 0.52 8.57 7.16 -10.99 -0.08 8.49 16 18 O -0.44 -9.64 14.83 -18.21 -0.27 -9.91 16 19 N -0.69 -8.30 5.13 -15.78 -0.08 -8.38 16 20 C 0.69 9.56 8.24 -86.92 -0.72 8.85 16 21 O -0.51 -9.76 12.50 -18.48 -0.23 -9.99 16 22 N -0.68 -6.57 5.35 -14.23 -0.08 -6.64 16 23 C 0.17 1.78 6.26 -83.69 -0.52 1.25 16 24 C -0.15 -1.25 9.97 -39.39 -0.39 -1.64 16 25 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 26 C -0.14 -1.17 10.04 -39.55 -0.40 -1.56 16 27 C -0.10 -1.00 10.04 -39.61 -0.40 -1.39 16 28 C -0.12 -1.46 8.65 -39.39 -0.34 -1.80 16 29 H 0.04 1.07 7.77 -51.93 -0.40 0.67 16 30 H 0.06 1.46 7.04 -51.93 -0.37 1.10 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 2.32 6.08 -51.93 -0.32 2.01 16 33 H 0.01 0.15 7.16 -51.93 -0.37 -0.22 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.34 7.01 8.00 -39.29 -0.31 6.70 16 36 H 0.08 1.07 7.72 -51.93 -0.40 0.67 16 37 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.05 0.48 7.56 -51.93 -0.39 0.09 16 39 H 0.41 2.88 8.13 -40.82 -0.33 2.55 16 40 H 0.41 2.18 8.84 -40.82 -0.36 1.82 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.14 1.96 6.49 -52.48 -0.34 1.62 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -34.53 370.38 -9.77 -44.29 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.41 Total: 8.91 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.38 Total: -1.95 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.03 Total: -52.85 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.50 Total: -19.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.53 -9.77 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.648 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds