Wall clock time and date at job start Tue Mar 31 2020 13:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47476 * 2 1 4 4 H 1.08994 * 109.47311 * 180.42985 * 3 2 1 5 5 C 1.50707 * 109.47016 * 300.42522 * 3 2 1 6 6 H 1.08005 * 119.99688 * 120.00296 * 5 3 2 7 7 C 1.37875 * 120.00316 * 299.99845 * 5 3 2 8 8 N 1.31513 * 119.99625 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00383 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46947 * 89.99850 * 9 7 5 11 11 H 1.48496 * 109.47443 * 210.00380 * 9 7 5 12 12 H 1.48510 * 109.46839 * 330.00225 * 9 7 5 13 13 N 1.46898 * 109.47282 * 60.42404 * 3 2 1 14 14 C 1.46894 * 110.99746 * 80.56448 * 13 3 2 15 15 H 1.09002 * 109.47474 * 329.52223 * 14 13 3 16 16 C 1.52998 * 109.47367 * 89.52069 * 14 13 3 17 17 C 1.50704 * 109.47314 * 209.52149 * 14 13 3 18 18 O 1.21233 * 119.99559 * 0.02562 * 17 14 13 19 19 N 1.34772 * 120.00244 * 179.97438 * 17 14 13 20 20 C 1.34777 * 120.00194 * 180.02562 * 19 17 14 21 21 O 1.21545 * 120.00042 * 0.02562 * 20 19 17 22 22 N 1.34772 * 120.00194 * 179.97438 * 20 19 17 23 23 C 1.39938 * 120.00101 * 185.12689 * 22 20 19 24 24 C 1.38865 * 120.06865 * 214.15632 * 23 22 20 25 25 C 1.38116 * 119.92633 * 179.79471 * 24 23 22 26 26 C 1.38278 * 120.07041 * 0.45527 * 25 24 23 27 27 C 1.38278 * 120.14174 * 359.79847 * 26 25 24 28 28 C 1.38110 * 120.06988 * 359.96837 * 27 26 25 29 29 H 1.09005 * 109.46452 * 295.14590 * 1 2 3 30 30 H 1.08997 * 109.47072 * 55.14199 * 1 2 3 31 31 H 1.08993 * 109.47716 * 175.14919 * 1 2 3 32 32 H 1.09004 * 109.46188 * 240.00114 * 2 1 3 33 33 H 1.08997 * 109.47402 * 120.00817 * 2 1 3 34 34 H 0.97000 * 120.00048 * 180.02562 * 8 7 5 35 35 H 1.00900 * 111.00311 * 204.51800 * 13 3 2 36 36 H 1.08994 * 109.47133 * 300.00152 * 16 14 13 37 37 H 1.09005 * 109.46625 * 60.00205 * 16 14 13 38 38 H 1.09003 * 109.47247 * 179.97438 * 16 14 13 39 39 H 0.97004 * 120.00427 * 0.02562 * 19 17 14 40 40 H 0.96996 * 120.00303 * 5.12785 * 22 20 19 41 41 H 1.08000 * 120.04261 * 0.02562 * 24 23 22 42 42 H 1.08000 * 119.96678 * 180.25226 * 25 24 23 43 43 H 1.07999 * 119.93365 * 179.77149 * 26 25 24 44 44 H 1.08003 * 119.96771 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.03497 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 -0.0077 5 6 1.5292 2.1559 -1.2252 6 1 0.9091 3.0338 -1.1196 7 6 1.8534 1.6880 -2.4810 8 7 2.6082 0.6187 -2.6095 9 14 1.2196 2.5719 -3.9996 10 1 2.1945 3.6149 -4.4082 11 1 1.0470 1.5953 -5.1049 12 1 -0.0867 3.2082 -3.6928 13 7 1.5589 2.1320 1.2045 14 6 2.3902 1.7993 2.3690 15 1 2.7875 0.7906 2.2556 16 6 3.5475 2.7948 2.4706 17 6 1.5538 1.8719 3.6205 18 8 0.3810 2.1708 3.5493 19 7 2.1093 1.6037 4.8188 20 6 1.3611 1.6681 5.9380 21 8 0.1854 1.9678 5.8667 22 7 1.9165 1.3994 7.1362 23 6 1.1179 1.3610 8.2848 24 6 1.6302 1.7874 9.5030 25 6 0.8381 1.7522 10.6339 26 6 -0.4607 1.2842 10.5557 27 6 -0.9721 0.8539 9.3452 28 6 -0.1867 0.8911 8.2097 29 1 -0.3632 0.4367 0.9304 30 1 -0.3633 0.5873 -0.8432 31 1 -0.3634 -1.0239 -0.0869 32 1 1.8932 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8367 0.2897 -3.4930 35 1 1.5222 3.1299 1.0596 36 1 4.1525 2.7423 1.5655 37 1 3.1502 3.8035 2.5841 38 1 4.1641 2.5482 3.3350 39 1 3.0475 1.3642 4.8758 40 1 2.8697 1.2325 7.2026 41 1 2.6457 2.1497 9.5654 42 1 1.2346 2.0875 11.5808 43 1 -1.0769 1.2542 11.4422 44 1 -1.9868 0.4885 9.2875 45 1 -0.5866 0.5545 7.2646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:40 Heat of formation + Delta-G solvation = -52.373730 kcal Electronic energy + Delta-G solvation = -26511.342898 eV Core-core repulsion = 22721.300261 eV Total energy + Delta-G solvation = -3790.042637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50257 -40.65214 -39.23779 -37.98972 -36.07604 -35.55773 -34.97939 -33.01887 -31.82536 -30.70868 -30.10780 -27.74239 -26.19100 -25.16697 -24.13154 -23.54413 -22.25331 -21.57801 -20.80098 -19.94212 -19.03001 -18.31097 -17.64316 -17.32682 -16.85472 -16.80449 -16.38705 -16.00534 -15.67509 -15.47257 -15.11691 -14.96509 -14.88406 -14.71522 -14.27493 -13.93559 -13.87622 -13.76217 -13.49609 -13.33510 -12.82308 -12.66947 -12.60520 -12.54311 -12.29684 -12.19800 -11.96865 -11.87161 -11.73575 -11.39644 -11.36714 -11.24647 -10.81944 -10.66522 -10.49297 -9.85555 -9.14476 -8.96897 -8.09113 -6.18465 0.28740 0.47756 1.08097 1.18116 1.41542 1.44927 1.53943 2.14667 2.43798 2.76172 2.91275 3.20567 3.60135 3.69407 3.99619 4.08094 4.10392 4.17569 4.32194 4.50030 4.55415 4.60848 4.62203 4.73065 4.75314 4.80693 4.94717 4.95277 5.13373 5.19957 5.26562 5.30679 5.34896 5.38021 5.52984 5.55797 5.59482 5.65341 5.73410 5.79521 5.86652 6.09752 6.29627 6.45950 6.51761 6.78136 6.99804 7.11622 7.21783 7.49294 8.96019 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.033370 B = 0.002377 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.870325 B =11776.650110 C =12075.696836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C 0.230 3.770 4 H -0.011 1.011 5 C -0.521 4.521 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.074 3.926 15 H 0.113 0.887 16 C -0.166 4.166 17 C 0.525 3.475 18 O -0.499 6.499 19 N -0.669 5.669 20 C 0.691 3.309 21 O -0.568 6.568 22 N -0.660 5.660 23 C 0.142 3.858 24 C -0.140 4.140 25 C -0.100 4.100 26 C -0.137 4.137 27 C -0.114 4.114 28 C -0.150 4.150 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.337 0.663 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.433 0.567 40 H 0.430 0.570 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.131 0.869 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.623 -0.113 26.306 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C 0.122 3.878 4 H 0.006 0.994 5 C -0.560 4.560 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.307 5.307 14 C -0.040 4.040 15 H 0.130 0.870 16 C -0.225 4.225 17 C 0.311 3.689 18 O -0.367 6.367 19 N -0.338 5.338 20 C 0.392 3.608 21 O -0.442 6.442 22 N -0.311 5.311 23 C 0.047 3.953 24 C -0.160 4.160 25 C -0.118 4.118 26 C -0.156 4.156 27 C -0.132 4.132 28 C -0.171 4.171 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.270 0.730 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.165 0.835 44 H 0.149 0.851 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.466 -0.259 26.064 26.445 hybrid contribution 1.039 0.513 -1.576 1.956 sum 5.506 0.254 24.488 25.101 Atomic orbital electron populations 1.21317 0.97075 0.98034 1.00288 1.21390 0.95403 0.98136 0.98991 1.18929 0.91849 0.91430 0.85606 0.99369 1.21344 1.31310 1.11936 0.91374 0.93187 1.25487 0.95341 0.95667 1.01228 1.69968 1.37754 1.23625 1.23709 0.85693 0.78685 0.78418 0.79625 1.20025 1.21095 1.20187 1.60125 1.53296 1.13606 1.03704 1.21518 0.91515 1.02735 0.88277 0.86958 1.22379 0.97193 0.98432 1.04471 1.21598 0.88203 0.74785 0.84334 1.90790 1.18179 1.41689 1.86052 1.43990 1.16484 1.67886 1.05434 1.16395 0.84963 0.78157 0.81315 1.91074 1.16305 1.51111 1.85684 1.42457 1.12642 1.72628 1.03391 1.17736 0.91699 0.99563 0.86256 1.21206 1.02442 1.01576 0.90766 1.21390 0.93565 0.97903 0.98969 1.21495 0.96677 0.99597 0.97798 1.21252 1.00068 0.99496 0.92425 1.21176 0.94975 1.01732 0.99189 0.94354 0.94562 0.95076 0.91653 0.95570 0.92947 0.84455 0.91565 0.92293 0.87999 0.72729 0.72981 0.82567 0.82335 0.83457 0.85123 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.18 9.53 71.98 0.69 -4.49 16 2 C -0.10 -4.78 5.51 30.59 0.17 -4.62 16 3 C 0.23 10.94 2.14 44.17 0.09 11.03 16 4 H -0.01 -0.56 7.48 -2.39 -0.02 -0.58 16 5 C -0.52 -27.71 7.23 25.60 0.19 -27.53 16 6 H 0.05 2.71 7.69 -2.91 -0.02 2.69 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -50.27 11.32 21.45 0.24 -50.02 16 9 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.68 -28.18 4.89 -477.18 -2.33 -30.51 16 14 C 0.07 2.31 2.79 44.17 0.12 2.43 16 15 H 0.11 3.32 6.80 -2.39 -0.02 3.30 16 16 C -0.17 -3.84 9.05 71.98 0.65 -3.19 16 17 C 0.52 17.30 7.16 87.66 0.63 17.93 16 18 O -0.50 -22.67 14.83 19.88 0.29 -22.38 16 19 N -0.67 -15.10 5.13 -440.53 -2.26 -17.36 16 20 C 0.69 18.86 8.24 179.06 1.47 20.34 16 21 O -0.57 -22.59 12.50 18.90 0.24 -22.35 16 22 N -0.66 -11.62 5.35 -317.23 -1.70 -13.32 16 23 C 0.14 2.89 6.26 38.15 0.24 3.13 16 24 C -0.14 -1.90 9.97 22.39 0.22 -1.68 16 25 C -0.10 -1.20 10.04 22.25 0.22 -0.98 16 26 C -0.14 -1.98 10.04 22.29 0.22 -1.76 16 27 C -0.11 -2.29 10.04 22.25 0.22 -2.07 16 28 C -0.15 -3.82 8.65 22.39 0.19 -3.63 16 29 H 0.04 1.83 7.77 -2.38 -0.02 1.81 16 30 H 0.04 1.83 7.04 -2.39 -0.02 1.82 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 3.45 6.08 -2.38 -0.01 3.43 16 33 H 0.03 1.11 7.16 -2.39 -0.02 1.09 16 34 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.34 14.23 8.00 -89.69 -0.72 13.51 16 36 H 0.07 1.73 7.72 -2.39 -0.02 1.71 16 37 H 0.06 1.42 8.12 -2.38 -0.02 1.40 16 38 H 0.10 1.37 7.56 -2.39 -0.02 1.35 16 39 H 0.43 4.75 8.13 -92.71 -0.75 3.99 16 40 H 0.43 3.26 8.84 -92.71 -0.82 2.44 16 41 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.10 3.22 6.49 -2.91 -0.02 3.20 16 Total: -1.00 -79.66 370.38 1.04 -78.61 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -1.25 Total: 25.40 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.79 Total: 6.58 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -6.05 Total: -111.21 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: 0.53 Total: -44.73 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -79.66 1.04 -78.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.239 kcal (2) G-P(sol) polarization free energy of solvation -79.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds