Wall clock time and date at job start Tue Mar 31 2020 12:19:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53010 * 109.47083 * 2 1
4 4 C 1.53000 * 109.47472 * 119.99773 * 2 1 3
5 5 C 1.50695 * 109.47171 * 300.00106 * 4 2 1
6 6 O 1.21288 * 120.00047 * 359.97438 * 5 4 2
7 7 N 1.34778 * 120.00026 * 179.97438 * 5 4 2
8 8 C 1.46493 * 119.99978 * 4.74059 * 7 5 4
9 9 C 1.50696 * 109.47312 * 269.99842 * 8 7 5
10 10 H 1.07994 * 120.00224 * 0.02562 * 9 8 7
11 11 C 1.37880 * 120.00002 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00040 * 179.97438 * 11 9 8
13 13 Si 1.86806 * 119.99907 * 0.02562 * 11 9 8
14 14 H 1.48501 * 109.47305 * 89.99545 * 13 11 9
15 15 H 1.48502 * 109.46675 * 209.99586 * 13 11 9
16 16 H 1.48499 * 109.46947 * 329.99515 * 13 11 9
17 17 C 1.40034 * 120.00068 * 184.74431 * 7 5 4
18 18 C 1.38847 * 120.04780 * 67.63749 * 17 7 5
19 19 C 1.38117 * 119.95566 * 179.74534 * 18 17 7
20 20 C 1.38476 * 120.04292 * 0.50911 * 19 18 17
21 21 F 1.35093 * 119.95316 * 179.74495 * 20 19 18
22 22 C 1.38473 * 120.08678 * 359.77058 * 20 19 18
23 23 C 1.38105 * 120.04848 * 359.97438 * 22 20 19
24 24 C 1.53001 * 109.47303 * 240.00324 * 2 1 3
25 25 C 1.52996 * 117.50147 * 128.74393 * 24 2 1
26 26 C 1.52996 * 117.49899 * 60.08053 * 24 2 1
27 27 H 1.09006 * 109.46982 * 300.00006 * 1 2 3
28 28 H 1.08995 * 109.47263 * 59.99532 * 1 2 3
29 29 H 1.08999 * 109.46996 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.46507 * 180.02562 * 3 2 1
31 31 H 1.08999 * 109.46773 * 300.00135 * 3 2 1
32 32 H 1.08995 * 109.46813 * 59.99846 * 3 2 1
33 33 H 1.08994 * 109.47233 * 179.97438 * 4 2 1
34 34 H 1.09007 * 109.46669 * 59.99845 * 4 2 1
35 35 H 1.09000 * 109.47236 * 30.00242 * 8 7 5
36 36 H 1.09001 * 109.47090 * 149.99669 * 8 7 5
37 37 H 0.97002 * 120.00103 * 180.02562 * 12 11 9
38 38 H 1.07999 * 120.02031 * 0.02562 * 18 17 7
39 39 H 1.07993 * 119.97640 * 180.23361 * 19 18 17
40 40 H 1.08011 * 119.97170 * 179.97438 * 22 20 19
41 41 H 1.08006 * 120.02202 * 179.97438 * 23 22 20
42 42 H 1.09005 * 115.54476 * 274.41964 * 24 2 1
43 43 H 1.08991 * 117.50001 * 0.02562 * 25 24 2
44 44 H 1.08999 * 117.49631 * 145.02245 * 25 24 2
45 45 H 1.08999 * 117.50091 * 214.98304 * 26 24 2
46 46 H 1.08992 * 117.50197 * 0.02562 * 26 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.5378 -0.0108 2.4797
6 8 0.8408 0.9756 2.3684
7 7 1.8630 -0.4715 3.7038
8 6 2.7882 -1.5991 3.8400
9 6 2.0106 -2.8900 3.8374
10 1 0.9350 -2.8723 3.7432
11 6 2.6727 -4.0938 3.9542
12 7 1.9941 -5.2203 3.9523
13 14 4.5334 -4.1245 4.1164
14 1 4.9062 -4.0636 5.5526
15 1 5.0615 -5.3781 3.5206
16 1 5.1116 -2.9563 3.4049
17 6 1.3165 0.1277 4.8454
18 6 -0.0417 0.0112 5.1092
19 6 -0.5777 0.5984 6.2385
20 6 0.2365 1.3120 7.1019
21 9 -0.2907 1.8900 8.2032
22 6 1.5903 1.4342 6.8375
23 6 2.1311 0.8440 5.7121
24 6 2.0400 -0.7212 -1.2493
25 6 3.0763 0.0040 -2.1101
26 6 1.6373 -0.1483 -2.6096
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9564 -0.8900
32 1 1.6766 1.9564 0.8899
33 1 3.1300 -0.7216 1.2490
34 1 1.6767 -1.7489 1.2492
35 1 3.4901 -1.5960 3.0061
36 1 3.3371 -1.5075 4.7773
37 1 2.4598 -6.0672 4.0349
38 1 -0.6777 -0.5421 4.4341
39 1 -1.6334 0.5049 6.4460
40 1 2.2236 1.9915 7.5120
41 1 3.1870 0.9399 5.5061
42 1 2.1253 -1.8046 -1.1647
43 1 3.3950 0.9947 -1.7863
44 1 3.8431 -0.6023 -2.5922
45 1 1.4581 -0.8547 -3.4201
46 1 1.0094 0.7426 -2.6146
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000580727999.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:11
Heat of formation + Delta-G solvation = -28.968796 kcal
Electronic energy + Delta-G solvation = -27548.544367 eV
Core-core repulsion = 23739.596682 eV
Total energy + Delta-G solvation = -3808.947685 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.169 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-48.67377 -40.35118 -38.90691 -37.58332 -35.21948 -33.33349 -32.59981 -30.91906
-29.84123 -28.07105 -27.06550 -27.00302 -23.52745 -23.11643 -22.38247 -22.13169
-21.93346 -19.12421 -17.97714 -17.46757 -17.20139 -16.87227 -16.20925 -15.97961
-15.58297 -15.33759 -14.80396 -14.63607 -14.22691 -14.02698 -13.60920 -13.34034
-13.29257 -13.09384 -12.97643 -12.78631 -12.47932 -12.15057 -11.97677 -11.87749
-11.66802 -11.40578 -11.27784 -10.98636 -10.87827 -10.85063 -10.72428 -10.64538
-10.45506 -10.34446 -10.07072 -9.73636 -9.66963 -9.03869 -8.85684 -8.79203
-8.61294 -7.74998 -6.29065 -4.31632 1.37381 1.49885 3.12051 3.13237
3.18360 3.21360 3.55738 3.85531 3.94674 4.19340 4.49125 4.77340
4.97522 4.99189 5.01185 5.05469 5.06409 5.17205 5.39284 5.41815
5.49359 5.59395 5.65215 5.70481 5.75070 5.79132 5.95531 5.99538
6.04340 6.11223 6.17628 6.21490 6.29483 6.30893 6.32658 6.39897
6.41650 6.43868 6.48284 6.60561 6.74386 6.78605 6.82213 6.94993
7.32272 7.42309 7.91866 8.27450 8.72252 8.79792 9.28975 10.83261
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.008853 B = 0.005352 C = 0.003726
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3162.031395 B = 5230.256511 C = 7512.025557
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.014 4.014
3 C -0.154 4.154
4 C -0.124 4.124
5 C 0.528 3.472
6 O -0.545 6.545
7 N -0.558 5.558
8 C 0.210 3.790
9 C -0.542 4.542
10 H 0.080 0.920
11 C 0.079 3.921
12 N -0.887 5.887
13 Si 0.869 3.131
14 H -0.273 1.273
15 H -0.282 1.282
16 H -0.263 1.263
17 C 0.167 3.833
18 C -0.074 4.074
19 C -0.143 4.143
20 C 0.081 3.919
21 F -0.146 7.146
22 C -0.145 4.145
23 C -0.100 4.100
24 C -0.139 4.139
25 C -0.187 4.187
26 C -0.179 4.179
27 H 0.083 0.917
28 H 0.045 0.955
29 H 0.048 0.952
30 H 0.047 0.953
31 H 0.046 0.954
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.110 0.890
35 H 0.041 0.959
36 H 0.031 0.969
37 H 0.267 0.733
38 H 0.132 0.868
39 H 0.134 0.866
40 H 0.133 0.867
41 H 0.131 0.869
42 H 0.105 0.895
43 H 0.099 0.901
44 H 0.087 0.913
45 H 0.088 0.912
46 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.195 10.674 -4.380 11.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.015 4.015
3 C -0.211 4.211
4 C -0.164 4.164
5 C 0.319 3.681
6 O -0.425 6.425
7 N -0.285 5.285
8 C 0.090 3.910
9 C -0.580 4.580
10 H 0.098 0.902
11 C -0.125 4.125
12 N -0.524 5.524
13 Si 0.695 3.305
14 H -0.199 1.199
15 H -0.207 1.207
16 H -0.188 1.188
17 C 0.075 3.925
18 C -0.094 4.094
19 C -0.162 4.162
20 C 0.061 3.939
21 F -0.125 7.125
22 C -0.165 4.165
23 C -0.120 4.120
24 C -0.157 4.157
25 C -0.224 4.224
26 C -0.216 4.216
27 H 0.102 0.898
28 H 0.064 0.936
29 H 0.067 0.933
30 H 0.066 0.934
31 H 0.065 0.935
32 H 0.103 0.897
33 H 0.107 0.893
34 H 0.128 0.872
35 H 0.059 0.941
36 H 0.049 0.951
37 H 0.078 0.922
38 H 0.150 0.850
39 H 0.152 0.848
40 H 0.151 0.849
41 H 0.149 0.851
42 H 0.123 0.877
43 H 0.117 0.883
44 H 0.106 0.894
45 H 0.107 0.893
46 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 0.862 10.968 -4.420 11.856
hybrid contribution 1.014 -0.513 0.353 1.190
sum 1.876 10.455 -4.068 11.374
Atomic orbital electron populations
1.22046 0.93996 1.01628 1.02849 1.19766 0.96005 0.94521 0.91186
1.22211 0.99881 0.95903 1.03063 1.21715 1.02157 1.01575 0.90915
1.20648 0.79621 0.83541 0.84335 1.90518 1.39120 1.26549 1.86279
1.45719 1.46501 1.33217 1.03111 1.19963 0.88938 0.84339 0.97794
1.21280 0.95961 0.88396 1.52404 0.90227 1.24837 0.98117 0.95371
0.94154 1.69876 1.35973 0.97737 1.48825 0.86969 0.86074 0.78331
0.79139 1.19850 1.20740 1.18789 1.17587 0.91842 0.94278 0.88775
1.21128 0.94882 0.97393 0.95951 1.20955 1.00286 0.99830 0.95131
1.17629 0.92248 0.98585 0.85401 1.91455 1.87010 1.82736 1.51318
1.20867 0.93401 1.03087 0.99099 1.21045 1.00363 0.96269 0.94282
1.22394 1.02970 0.99177 0.91177 1.23129 0.92321 1.02572 1.04376
1.22891 0.98081 1.03185 0.97448 0.89791 0.93590 0.93294 0.93430
0.93523 0.89681 0.89300 0.87189 0.94144 0.95069 0.92250 0.84984
0.84840 0.84900 0.85121 0.87681 0.88287 0.89407 0.89316 0.88993
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.22 8.02 37.16 0.30 -1.92 16
2 C -0.01 -0.21 0.62 -154.50 -0.10 -0.30 16
3 C -0.15 -2.14 6.78 37.16 0.25 -1.89 16
4 C -0.12 -2.05 3.41 -27.89 -0.10 -2.15 16
5 C 0.53 9.77 6.94 -10.99 -0.08 9.70 16
6 O -0.55 -10.57 11.10 5.55 0.06 -10.51 16
7 N -0.56 -10.80 2.51 -114.73 -0.29 -11.09 16
8 C 0.21 4.38 3.95 -5.20 -0.02 4.36 16
9 C -0.54 -13.58 9.71 -34.44 -0.33 -13.91 16
10 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16
11 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16
12 N -0.89 -24.95 13.96 55.43 0.77 -24.17 16
13 Si 0.87 19.09 27.47 -169.99 -4.67 14.42 16
14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
16 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16
17 C 0.17 3.08 4.76 -83.66 -0.40 2.68 16
18 C -0.07 -1.31 9.53 -39.40 -0.38 -1.69 16
19 C -0.14 -2.23 10.02 -39.54 -0.40 -2.62 16
20 C 0.08 1.24 7.30 -39.41 -0.29 0.95 16
21 F -0.15 -2.19 17.26 2.25 0.04 -2.15 16
22 C -0.15 -2.12 10.02 -39.54 -0.40 -2.51 16
23 C -0.10 -1.61 9.69 -39.40 -0.38 -1.99 16
24 C -0.14 -1.80 5.14 -90.62 -0.47 -2.26 16
25 C -0.19 -2.12 9.57 -26.69 -0.26 -2.37 16
26 C -0.18 -2.01 9.39 -26.69 -0.25 -2.26 16
27 H 0.08 1.43 5.51 -51.93 -0.29 1.14 16
28 H 0.05 0.62 7.29 -51.93 -0.38 0.24 16
29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.05 0.62 6.97 -51.93 -0.36 0.26 16
31 H 0.05 0.59 7.07 -51.93 -0.37 0.22 16
32 H 0.08 1.37 5.51 -51.93 -0.29 1.09 16
33 H 0.09 1.39 7.26 -51.93 -0.38 1.02 16
34 H 0.11 1.99 7.91 -51.93 -0.41 1.58 16
35 H 0.04 0.81 5.53 -51.93 -0.29 0.52 16
36 H 0.03 0.65 7.29 -51.93 -0.38 0.27 16
37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16
38 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16
39 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16
40 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16
41 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16
42 H 0.11 1.40 8.11 -51.93 -0.42 0.98 16
43 H 0.10 1.10 5.85 -51.93 -0.30 0.80 16
44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
46 H 0.09 1.02 7.07 -51.93 -0.37 0.65 16
LS Contribution 367.77 15.07 5.54 5.54
Total: -1.00 -27.44 367.77 -8.69 -36.13
By element:
Atomic # 1 Polarization: 14.83 SS G_CDS: -6.78 Total: 8.05 kcal
Atomic # 6 Polarization: -12.85 SS G_CDS: -3.38 Total: -16.23 kcal
Atomic # 7 Polarization: -35.75 SS G_CDS: 0.49 Total: -35.26 kcal
Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.51 kcal
Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal
Atomic # 14 Polarization: 19.09 SS G_CDS: -4.67 Total: 14.42 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -27.44 -8.69 -36.13 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000580727999.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.165 kcal
(2) G-P(sol) polarization free energy of solvation -27.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds