Wall clock time and date at job start Tue Mar 31 2020 12:19:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53010 * 109.47083 * 2 1
4 4 C 1.53000 * 109.47472 * 119.99773 * 2 1 3
5 5 C 1.50695 * 109.47171 * 300.00106 * 4 2 1
6 6 O 1.21288 * 120.00047 * 359.97438 * 5 4 2
7 7 N 1.34778 * 120.00026 * 179.97438 * 5 4 2
8 8 C 1.46493 * 119.99978 * 4.74059 * 7 5 4
9 9 C 1.50696 * 109.47312 * 269.99842 * 8 7 5
10 10 H 1.07994 * 120.00224 * 0.02562 * 9 8 7
11 11 C 1.37880 * 120.00002 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00040 * 179.97438 * 11 9 8
13 13 Si 1.86806 * 119.99907 * 0.02562 * 11 9 8
14 14 H 1.48501 * 109.47305 * 89.99545 * 13 11 9
15 15 H 1.48502 * 109.46675 * 209.99586 * 13 11 9
16 16 H 1.48499 * 109.46947 * 329.99515 * 13 11 9
17 17 C 1.40034 * 120.00068 * 184.74431 * 7 5 4
18 18 C 1.38847 * 120.04780 * 67.63749 * 17 7 5
19 19 C 1.38117 * 119.95566 * 179.74534 * 18 17 7
20 20 C 1.38476 * 120.04292 * 0.50911 * 19 18 17
21 21 F 1.35093 * 119.95316 * 179.74495 * 20 19 18
22 22 C 1.38473 * 120.08678 * 359.77058 * 20 19 18
23 23 C 1.38105 * 120.04848 * 359.97438 * 22 20 19
24 24 C 1.53001 * 109.47303 * 240.00324 * 2 1 3
25 25 C 1.52996 * 117.50147 * 128.74393 * 24 2 1
26 26 C 1.52996 * 117.49899 * 60.08053 * 24 2 1
27 27 H 1.09006 * 109.46982 * 300.00006 * 1 2 3
28 28 H 1.08995 * 109.47263 * 59.99532 * 1 2 3
29 29 H 1.08999 * 109.46996 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.46507 * 180.02562 * 3 2 1
31 31 H 1.08999 * 109.46773 * 300.00135 * 3 2 1
32 32 H 1.08995 * 109.46813 * 59.99846 * 3 2 1
33 33 H 1.08994 * 109.47233 * 179.97438 * 4 2 1
34 34 H 1.09007 * 109.46669 * 59.99845 * 4 2 1
35 35 H 1.09000 * 109.47236 * 30.00242 * 8 7 5
36 36 H 1.09001 * 109.47090 * 149.99669 * 8 7 5
37 37 H 0.97002 * 120.00103 * 180.02562 * 12 11 9
38 38 H 1.07999 * 120.02031 * 0.02562 * 18 17 7
39 39 H 1.07993 * 119.97640 * 180.23361 * 19 18 17
40 40 H 1.08011 * 119.97170 * 179.97438 * 22 20 19
41 41 H 1.08006 * 120.02202 * 179.97438 * 23 22 20
42 42 H 1.09005 * 115.54476 * 274.41964 * 24 2 1
43 43 H 1.08991 * 117.50001 * 0.02562 * 25 24 2
44 44 H 1.08999 * 117.49631 * 145.02245 * 25 24 2
45 45 H 1.08999 * 117.50091 * 214.98304 * 26 24 2
46 46 H 1.08992 * 117.50197 * 0.02562 * 26 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.5378 -0.0108 2.4797
6 8 0.8408 0.9756 2.3684
7 7 1.8630 -0.4715 3.7038
8 6 2.7882 -1.5991 3.8400
9 6 2.0106 -2.8900 3.8374
10 1 0.9350 -2.8723 3.7432
11 6 2.6727 -4.0938 3.9542
12 7 1.9941 -5.2203 3.9523
13 14 4.5334 -4.1245 4.1164
14 1 4.9062 -4.0636 5.5526
15 1 5.0615 -5.3781 3.5206
16 1 5.1116 -2.9563 3.4049
17 6 1.3165 0.1277 4.8454
18 6 -0.0417 0.0112 5.1092
19 6 -0.5777 0.5984 6.2385
20 6 0.2365 1.3120 7.1019
21 9 -0.2907 1.8900 8.2032
22 6 1.5903 1.4342 6.8375
23 6 2.1311 0.8440 5.7121
24 6 2.0400 -0.7212 -1.2493
25 6 3.0763 0.0040 -2.1101
26 6 1.6373 -0.1483 -2.6096
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9564 -0.8900
32 1 1.6766 1.9564 0.8899
33 1 3.1300 -0.7216 1.2490
34 1 1.6767 -1.7489 1.2492
35 1 3.4901 -1.5960 3.0061
36 1 3.3371 -1.5075 4.7773
37 1 2.4598 -6.0672 4.0349
38 1 -0.6777 -0.5421 4.4341
39 1 -1.6334 0.5049 6.4460
40 1 2.2236 1.9915 7.5120
41 1 3.1870 0.9399 5.5061
42 1 2.1253 -1.8046 -1.1647
43 1 3.3950 0.9947 -1.7863
44 1 3.8431 -0.6023 -2.5922
45 1 1.4581 -0.8547 -3.4201
46 1 1.0094 0.7426 -2.6146
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000580727999.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:10
Heat of formation + Delta-G solvation = -40.471369 kcal
Electronic energy + Delta-G solvation = -27549.043156 eV
Core-core repulsion = 23739.596682 eV
Total energy + Delta-G solvation = -3809.446474 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.169 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-49.88967 -41.73832 -40.09626 -38.80927 -36.75045 -34.66105 -34.34286 -32.17691
-31.26536 -29.72308 -28.40492 -28.21842 -24.79936 -24.59182 -23.85851 -23.22602
-22.99166 -20.47276 -19.18005 -19.11299 -18.73364 -18.22500 -17.67289 -17.33444
-16.67999 -16.54414 -16.30429 -16.03332 -15.60146 -15.38541 -14.83462 -14.66019
-14.55318 -14.48822 -14.29572 -14.22564 -13.86702 -13.73925 -13.32035 -13.18046
-13.05202 -12.68155 -12.57867 -12.47724 -12.20283 -12.15007 -12.00543 -11.89281
-11.78319 -11.68085 -11.59496 -11.08368 -10.80148 -10.68512 -10.42630 -10.11380
-10.04209 -9.19330 -8.29312 -6.36875 0.07108 0.23853 1.40854 1.41385
1.50632 1.66580 2.13395 2.34485 2.55699 2.99886 3.04987 3.24457
3.63736 3.76794 3.80646 3.89229 4.03823 4.09311 4.23003 4.23650
4.34469 4.37483 4.40122 4.44100 4.59533 4.75379 4.79796 4.82214
4.87169 4.88397 4.89594 4.91262 5.07354 5.08089 5.12538 5.16685
5.18189 5.20149 5.36247 5.36421 5.42333 5.47249 5.54343 5.61163
5.67040 5.98578 6.19900 6.51612 6.68239 7.23810 7.34034 8.86758
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.008853 B = 0.005352 C = 0.003726
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3162.031395 B = 5230.256511 C = 7512.025557
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.010 4.010
3 C -0.145 4.145
4 C -0.120 4.120
5 C 0.522 3.478
6 O -0.555 6.555
7 N -0.562 5.562
8 C 0.218 3.782
9 C -0.537 4.537
10 H 0.031 0.969
11 C 0.021 3.979
12 N -0.941 5.941
13 Si 0.935 3.065
14 H -0.268 1.268
15 H -0.285 1.285
16 H -0.230 1.230
17 C 0.135 3.865
18 C -0.097 4.097
19 C -0.142 4.142
20 C 0.079 3.921
21 F -0.141 7.141
22 C -0.133 4.133
23 C -0.101 4.101
24 C -0.158 4.158
25 C -0.175 4.175
26 C -0.171 4.171
27 H 0.059 0.941
28 H 0.062 0.938
29 H 0.037 0.963
30 H 0.059 0.941
31 H 0.060 0.940
32 H 0.061 0.939
33 H 0.102 0.898
34 H 0.087 0.913
35 H 0.058 0.942
36 H 0.044 0.956
37 H 0.268 0.732
38 H 0.112 0.888
39 H 0.152 0.848
40 H 0.168 0.832
41 H 0.152 0.848
42 H 0.096 0.904
43 H 0.104 0.896
44 H 0.099 0.901
45 H 0.100 0.900
46 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.733 12.596 -4.612 13.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.010 4.010
3 C -0.202 4.202
4 C -0.159 4.159
5 C 0.314 3.686
6 O -0.435 6.435
7 N -0.289 5.289
8 C 0.097 3.903
9 C -0.576 4.576
10 H 0.049 0.951
11 C -0.178 4.178
12 N -0.581 5.581
13 Si 0.758 3.242
14 H -0.193 1.193
15 H -0.211 1.211
16 H -0.153 1.153
17 C 0.044 3.956
18 C -0.117 4.117
19 C -0.162 4.162
20 C 0.060 3.940
21 F -0.120 7.120
22 C -0.152 4.152
23 C -0.121 4.121
24 C -0.176 4.176
25 C -0.212 4.212
26 C -0.207 4.207
27 H 0.078 0.922
28 H 0.081 0.919
29 H 0.056 0.944
30 H 0.078 0.922
31 H 0.079 0.921
32 H 0.080 0.920
33 H 0.120 0.880
34 H 0.105 0.895
35 H 0.076 0.924
36 H 0.062 0.938
37 H 0.077 0.923
38 H 0.130 0.870
39 H 0.169 0.831
40 H 0.186 0.814
41 H 0.169 0.831
42 H 0.114 0.886
43 H 0.123 0.877
44 H 0.118 0.882
45 H 0.118 0.882
46 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 3.387 12.928 -4.653 14.151
hybrid contribution 0.049 -1.074 0.467 1.172
sum 3.436 11.855 -4.186 13.033
Atomic orbital electron populations
1.21976 0.94911 1.00748 1.02427 1.19714 0.95255 0.95050 0.91025
1.22106 1.00546 0.94988 1.02575 1.21718 1.02818 1.00236 0.91162
1.21022 0.79411 0.83496 0.84681 1.90516 1.39402 1.27145 1.86433
1.45698 1.46517 1.32880 1.03852 1.19780 0.88841 0.82780 0.98856
1.21422 0.94106 0.90721 1.51341 0.95110 1.25745 1.03612 0.94670
0.93761 1.70047 1.38359 0.98594 1.51063 0.85895 0.79416 0.79310
0.79580 1.19294 1.21096 1.15318 1.17952 0.92458 0.95802 0.89416
1.21095 0.95024 0.98652 0.96888 1.21111 1.01435 0.99246 0.94360
1.17730 0.92714 0.98287 0.85308 1.91471 1.87030 1.82556 1.50957
1.21218 0.93321 1.01940 0.98692 1.21272 1.01125 0.95653 0.94011
1.22263 1.05387 0.98721 0.91271 1.23204 0.92444 1.02577 1.02980
1.22968 0.98250 1.03213 0.96305 0.92191 0.91879 0.94391 0.92217
0.92067 0.92009 0.88006 0.89495 0.92379 0.93840 0.92320 0.86998
0.83056 0.81403 0.83067 0.88562 0.87727 0.88222 0.88193 0.88649
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.40 8.02 71.98 0.58 -3.82 16
2 C -0.01 -0.28 0.62 -52.18 -0.03 -0.32 16
3 C -0.15 -3.84 6.78 71.99 0.49 -3.35 16
4 C -0.12 -4.00 3.41 29.85 0.10 -3.90 16
5 C 0.52 19.74 6.94 87.66 0.61 20.35 16
6 O -0.56 -22.09 11.10 -3.05 -0.03 -22.12 16
7 N -0.56 -21.98 2.51 -635.27 -1.59 -23.57 16
8 C 0.22 8.99 3.95 85.63 0.34 9.33 16
9 C -0.54 -27.79 9.71 25.60 0.25 -27.54 16
10 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16
11 C 0.02 1.12 5.47 84.66 0.46 1.58 16
12 N -0.94 -54.98 13.96 21.45 0.30 -54.68 16
13 Si 0.94 38.60 27.47 68.60 1.88 40.49 16
14 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16
15 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16
16 H -0.23 -8.23 6.54 99.48 0.65 -7.58 16
17 C 0.13 5.00 4.76 38.12 0.18 5.18 16
18 C -0.10 -3.57 9.53 22.39 0.21 -3.36 16
19 C -0.14 -4.43 10.02 22.30 0.22 -4.21 16
20 C 0.08 2.29 7.30 22.38 0.16 2.45 16
21 F -0.14 -3.92 17.26 44.97 0.78 -3.14 16
22 C -0.13 -3.51 10.02 22.29 0.22 -3.29 16
23 C -0.10 -3.07 9.69 22.38 0.22 -2.85 16
24 C -0.16 -3.89 5.14 -10.80 -0.06 -3.94 16
25 C -0.18 -3.49 9.57 30.62 0.29 -3.19 16
26 C -0.17 -3.44 9.39 30.62 0.29 -3.15 16
27 H 0.06 2.13 5.51 -2.38 -0.01 2.12 16
28 H 0.06 1.67 7.29 -2.39 -0.02 1.65 16
29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16
30 H 0.06 1.42 6.97 -2.39 -0.02 1.40 16
31 H 0.06 1.42 7.07 -2.39 -0.02 1.40 16
32 H 0.06 1.95 5.51 -2.39 -0.01 1.94 16
33 H 0.10 3.08 7.26 -2.39 -0.02 3.06 16
34 H 0.09 3.30 7.91 -2.38 -0.02 3.28 16
35 H 0.06 2.21 5.53 -2.39 -0.01 2.19 16
36 H 0.04 1.71 7.29 -2.39 -0.02 1.69 16
37 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16
38 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16
39 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16
40 H 0.17 3.24 8.06 -2.90 -0.02 3.22 16
41 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16
42 H 0.10 2.53 8.11 -2.38 -0.02 2.51 16
43 H 0.10 1.98 5.85 -2.39 -0.01 1.96 16
44 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16
45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
46 H 0.10 1.87 7.07 -2.39 -0.02 1.85 16
Total: -1.00 -61.75 367.77 6.80 -54.95
By element:
Atomic # 1 Polarization: 31.19 SS G_CDS: 0.92 Total: 32.11 kcal
Atomic # 6 Polarization: -28.57 SS G_CDS: 4.54 Total: -24.03 kcal
Atomic # 7 Polarization: -76.96 SS G_CDS: -1.29 Total: -78.25 kcal
Atomic # 8 Polarization: -22.09 SS G_CDS: -0.03 Total: -22.12 kcal
Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal
Atomic # 14 Polarization: 38.60 SS G_CDS: 1.88 Total: 40.49 kcal
Total: -61.75 6.80 -54.95 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000580727999.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.481 kcal
(2) G-P(sol) polarization free energy of solvation -61.748 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds