Wall clock time and date at job start Tue Mar 31 2020 13:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 C 1.38219 * 120.01454 * 105.00148 * 6 5 4 8 8 C 1.38226 * 120.03060 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.04495 * 0.02562 * 8 7 6 10 10 C 1.38175 * 120.03013 * 359.97438 * 9 8 7 11 11 C 1.38437 * 120.01634 * 284.72505 * 6 5 4 12 12 F 1.35107 * 120.02466 * 359.97438 * 11 6 5 13 13 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 14 14 O 1.21283 * 120.00062 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00216 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.47172 * 179.97438 * 15 13 4 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47003 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47222 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00266 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99997 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99804 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47261 * 90.00444 * 23 21 19 25 25 H 1.48504 * 109.47274 * 210.00471 * 23 21 19 26 26 H 1.48500 * 109.47158 * 329.99919 * 23 21 19 27 27 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 31 31 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 32 32 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 33 33 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 34 34 H 1.07999 * 119.98668 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.97626 * 179.97438 * 8 7 6 36 36 H 1.08006 * 119.98389 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.01003 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47357 * 300.00116 * 15 13 4 39 39 H 1.08998 * 109.46869 * 60.00030 * 15 13 4 40 40 H 1.09000 * 109.47535 * 299.99991 * 16 15 13 41 41 H 1.08998 * 109.47172 * 60.00248 * 16 15 13 42 42 H 1.08995 * 109.47557 * 299.99708 * 17 16 15 43 43 H 1.09007 * 109.47215 * 60.00822 * 17 16 15 44 44 H 1.09000 * 109.46984 * 300.00591 * 18 17 16 45 45 H 1.08999 * 109.46611 * 60.00077 * 18 17 16 46 46 H 0.97001 * 119.99562 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 6 6.1419 2.5229 1.4231 8 6 6.9703 3.5520 1.0165 9 6 6.9189 4.0079 -0.2878 10 6 6.0396 3.4348 -1.1865 11 6 5.2133 2.3999 -0.7817 12 9 4.3575 1.8347 -1.6612 13 6 2.5936 1.8222 2.3214 14 8 3.3639 1.8448 3.2579 15 6 1.1891 2.3425 2.4882 16 6 0.9953 2.8364 3.9233 17 6 -0.4304 3.3652 4.0924 18 6 -0.6245 3.8586 5.5276 19 6 -2.0289 4.3788 5.6944 20 1 -2.7147 4.3590 4.8603 21 6 -2.4387 4.8789 6.9122 22 7 -1.6038 4.9025 7.9280 23 14 -4.1799 5.5231 7.1191 24 1 -5.0687 4.4162 7.5550 25 1 -4.1913 6.5993 8.1424 26 1 -4.6639 6.0662 5.8245 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.7141 0.4278 1.9201 33 1 4.3666 0.0352 0.2191 34 1 6.1826 2.1678 2.4423 35 1 7.6576 4.0008 1.7184 36 1 7.5664 4.8123 -0.6043 37 1 5.9994 3.7914 -2.2051 38 1 1.0219 3.1662 1.7943 39 1 0.4784 1.5426 2.2806 40 1 1.1623 2.0124 4.6169 41 1 1.7061 3.6362 4.1313 42 1 -0.5970 4.1893 3.3989 43 1 -1.1416 2.5656 3.8842 44 1 -0.4580 3.0341 6.2209 45 1 0.0866 4.6579 5.7362 46 1 -1.8923 5.2541 8.7848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588302915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:30 Heat of formation + Delta-G solvation = -54.570971 kcal Electronic energy + Delta-G solvation = -26257.582429 eV Core-core repulsion = 22447.524551 eV Total energy + Delta-G solvation = -3810.057879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.31050 -40.22736 -39.03665 -36.44817 -34.96652 -33.79744 -32.57637 -31.77212 -30.78600 -29.70467 -27.17784 -26.36991 -24.99285 -23.07007 -22.55647 -21.59112 -20.41678 -19.98381 -18.92053 -17.95983 -17.17866 -16.65247 -16.41953 -16.37709 -16.10762 -15.65362 -15.49427 -14.91555 -14.59855 -14.42872 -14.24120 -13.72504 -13.54389 -13.41844 -13.37687 -12.83180 -12.65075 -12.47551 -12.14179 -11.99325 -11.80107 -11.64290 -11.58060 -11.42755 -11.29487 -10.96239 -10.50941 -10.48405 -10.36931 -9.93616 -9.61899 -9.56333 -9.31719 -9.17527 -9.03387 -8.94138 -8.81489 -8.28418 -5.93286 -3.95598 0.78857 0.90956 1.95737 2.71796 2.97968 3.35289 3.40557 3.41275 3.44548 3.90855 4.34923 4.37603 4.50442 4.59978 4.66405 4.72681 4.83599 4.93548 4.98067 5.13940 5.20329 5.34109 5.37466 5.38227 5.42105 5.53500 5.56562 5.70137 5.76494 5.81397 5.90564 6.04711 6.13290 6.17955 6.27495 6.35295 6.38135 6.45659 6.57582 6.59056 6.87754 7.04765 7.22272 7.31283 7.76532 7.92970 8.08448 8.23247 8.50414 9.12131 9.67874 11.18086 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002580 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.173300 B =10848.512857 C =11858.892486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.178 4.178 3 C 0.120 3.880 4 N -0.611 5.611 5 C 0.155 3.845 6 C -0.137 4.137 7 C -0.067 4.067 8 C -0.130 4.130 9 C -0.090 4.090 10 C -0.158 4.158 11 C 0.106 3.894 12 F -0.136 7.136 13 C 0.518 3.482 14 O -0.531 6.531 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.109 4.109 18 C 0.020 3.980 19 C -0.519 4.519 20 H 0.054 0.946 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.551 -8.168 -22.430 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C -0.002 4.002 4 N -0.344 5.344 5 C 0.033 3.967 6 C -0.139 4.139 7 C -0.085 4.085 8 C -0.148 4.148 9 C -0.109 4.109 10 C -0.177 4.177 11 C 0.086 3.914 12 F -0.115 7.115 13 C 0.307 3.693 14 O -0.407 6.407 15 C -0.178 4.178 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.017 4.017 19 C -0.558 4.558 20 H 0.072 0.928 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.939 -8.122 -21.753 28.742 hybrid contribution -1.160 0.263 -0.110 1.194 sum 15.779 -7.859 -21.863 28.085 Atomic orbital electron populations 1.23961 0.95755 1.02457 0.98893 1.23275 0.96295 0.98791 1.01372 1.21039 0.92784 0.95915 0.90467 1.48078 1.11329 1.63525 1.11492 1.20215 0.80772 0.92741 1.03008 1.20345 1.00044 1.01183 0.92322 1.21122 0.93301 0.94698 0.99417 1.21284 0.99925 0.97347 0.96294 1.21053 0.97546 0.99091 0.93170 1.21119 0.97934 0.97228 1.01390 1.17554 0.91546 0.95224 0.87040 1.91376 1.67899 1.83928 1.68270 1.21130 0.90499 0.76360 0.81278 1.90672 1.55812 1.54935 1.39252 1.21850 0.92588 1.01855 1.01462 1.21453 0.98996 1.01085 0.92499 1.21643 0.93080 0.99050 1.00943 1.19089 0.96486 0.96210 0.89879 1.21286 0.97806 1.40418 0.96273 0.92776 1.25041 0.97302 0.96106 0.96125 1.69977 1.34979 1.46717 1.01820 0.86618 0.85082 0.78611 0.77816 1.20714 1.21264 1.19919 0.88154 0.88028 0.87298 0.89616 0.88213 0.88419 0.89604 0.84485 0.85163 0.85048 0.84809 0.89417 0.89061 0.91836 0.91906 0.93560 0.93511 0.96616 0.96623 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 13.86 29.01 0.40 -1.05 16 2 C -0.18 -1.56 9.74 -36.03 -0.35 -1.91 16 3 C 0.12 1.13 5.63 -5.19 -0.03 1.10 16 4 N -0.61 -7.03 2.44 -176.43 -0.43 -7.46 16 5 C 0.16 1.59 5.27 -5.20 -0.03 1.56 16 6 C -0.14 -1.41 5.47 -104.56 -0.57 -1.98 16 7 C -0.07 -0.67 9.67 -39.59 -0.38 -1.06 16 8 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 9 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 10 C -0.16 -1.32 10.03 -39.52 -0.40 -1.72 16 11 C 0.11 1.03 7.25 -39.42 -0.29 0.75 16 12 F -0.14 -1.31 13.84 2.25 0.03 -1.28 16 13 C 0.52 7.63 7.67 -10.99 -0.08 7.55 16 14 O -0.53 -9.55 15.56 5.55 0.09 -9.46 16 15 C -0.14 -1.98 4.25 -27.88 -0.12 -2.10 16 16 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 17 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 18 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 19 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 20 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 23 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.10 0.76 8.06 -52.48 -0.42 0.33 16 28 H 0.10 0.82 7.84 -52.49 -0.41 0.41 16 29 H 0.11 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.09 0.78 6.09 -51.93 -0.32 0.46 16 31 H 0.10 0.88 4.95 -51.93 -0.26 0.62 16 32 H 0.10 1.07 7.23 -51.93 -0.38 0.69 16 33 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 34 H 0.14 1.40 8.00 -52.49 -0.42 0.98 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.09 1.13 7.40 -51.93 -0.38 0.74 16 39 H 0.09 1.19 7.53 -51.93 -0.39 0.80 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -33.65 386.28 -9.38 -43.04 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.16 Total: -1.28 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -3.45 Total: -19.42 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.31 Total: -34.46 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.03 Total: -1.28 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.65 -9.38 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588302915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.535 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds