Wall clock time and date at job start Tue Mar 31 2020 13:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46496 * 119.99759 * 90.00349 * 4 3 2 6 6 C 1.50695 * 109.47390 * 89.99689 * 5 4 3 7 7 C 1.38219 * 120.01454 * 105.00148 * 6 5 4 8 8 C 1.38226 * 120.03060 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.04495 * 0.02562 * 8 7 6 10 10 C 1.38175 * 120.03013 * 359.97438 * 9 8 7 11 11 C 1.38437 * 120.01634 * 284.72505 * 6 5 4 12 12 F 1.35107 * 120.02466 * 359.97438 * 11 6 5 13 13 C 1.34771 * 120.00084 * 270.00021 * 4 3 2 14 14 O 1.21283 * 120.00062 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00216 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.47172 * 179.97438 * 15 13 4 17 17 C 1.53001 * 109.46762 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.47003 * 179.97438 * 17 16 15 19 19 C 1.50692 * 109.47222 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00266 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99997 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99804 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00020 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47261 * 90.00444 * 23 21 19 25 25 H 1.48504 * 109.47274 * 210.00471 * 23 21 19 26 26 H 1.48500 * 109.47158 * 329.99919 * 23 21 19 27 27 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 31 31 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 32 32 H 1.09001 * 109.47057 * 210.00204 * 5 4 3 33 33 H 1.08999 * 109.47333 * 329.99764 * 5 4 3 34 34 H 1.07999 * 119.98668 * 359.97438 * 7 6 5 35 35 H 1.07996 * 119.97626 * 179.97438 * 8 7 6 36 36 H 1.08006 * 119.98389 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.01003 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47357 * 300.00116 * 15 13 4 39 39 H 1.08998 * 109.46869 * 60.00030 * 15 13 4 40 40 H 1.09000 * 109.47535 * 299.99991 * 16 15 13 41 41 H 1.08998 * 109.47172 * 60.00248 * 16 15 13 42 42 H 1.08995 * 109.47557 * 299.99708 * 17 16 15 43 43 H 1.09007 * 109.47215 * 60.00822 * 17 16 15 44 44 H 1.09000 * 109.46984 * 300.00591 * 18 17 16 45 45 H 1.08999 * 109.46611 * 60.00077 * 18 17 16 46 46 H 0.97001 * 119.99562 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3589 0.8257 0.9695 6 6 5.2615 1.9480 0.5260 7 6 6.1419 2.5229 1.4231 8 6 6.9703 3.5520 1.0165 9 6 6.9189 4.0079 -0.2878 10 6 6.0396 3.4348 -1.1865 11 6 5.2133 2.3999 -0.7817 12 9 4.3575 1.8347 -1.6612 13 6 2.5936 1.8222 2.3214 14 8 3.3639 1.8448 3.2579 15 6 1.1891 2.3425 2.4882 16 6 0.9953 2.8364 3.9233 17 6 -0.4304 3.3652 4.0924 18 6 -0.6245 3.8586 5.5276 19 6 -2.0289 4.3788 5.6944 20 1 -2.7147 4.3590 4.8603 21 6 -2.4387 4.8789 6.9122 22 7 -1.6038 4.9025 7.9280 23 14 -4.1799 5.5231 7.1191 24 1 -5.0687 4.4162 7.5550 25 1 -4.1913 6.5993 8.1424 26 1 -4.6639 6.0662 5.8245 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.7141 0.4278 1.9201 33 1 4.3666 0.0352 0.2191 34 1 6.1826 2.1678 2.4423 35 1 7.6576 4.0008 1.7184 36 1 7.5664 4.8123 -0.6043 37 1 5.9994 3.7914 -2.2051 38 1 1.0219 3.1662 1.7943 39 1 0.4784 1.5426 2.2806 40 1 1.1623 2.0124 4.6169 41 1 1.7061 3.6362 4.1313 42 1 -0.5970 4.1893 3.3989 43 1 -1.1416 2.5656 3.8842 44 1 -0.4580 3.0341 6.2209 45 1 0.0866 4.6579 5.7362 46 1 -1.8923 5.2541 8.7848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588302915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:29 Heat of formation + Delta-G solvation = -71.339529 kcal Electronic energy + Delta-G solvation = -26258.309568 eV Core-core repulsion = 22447.524551 eV Total energy + Delta-G solvation = -3810.785018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02306 -41.24007 -39.80277 -37.42760 -36.66575 -34.82189 -34.34629 -32.63723 -31.54660 -31.29445 -28.24911 -27.51186 -26.40444 -24.09005 -23.74245 -22.61699 -21.73055 -21.18763 -19.87149 -18.69873 -18.42339 -18.09365 -17.54561 -17.23704 -17.14686 -16.68125 -16.51900 -16.32446 -15.75904 -15.60581 -15.10849 -14.75536 -14.54966 -14.51430 -14.23826 -14.17381 -13.76263 -13.60039 -13.49563 -13.38072 -13.13750 -12.82980 -12.63451 -12.49666 -12.35525 -12.26125 -12.16952 -12.10772 -11.96953 -11.39886 -11.34813 -11.16764 -10.88196 -10.54866 -10.31442 -9.99235 -9.85991 -9.62317 -8.18497 -6.30636 0.09615 0.22374 1.26694 1.40380 1.42716 1.53776 1.59185 2.11053 2.42119 2.67667 3.14190 3.21710 3.55661 3.62637 3.78091 3.95072 3.99251 4.02558 4.10533 4.11791 4.22849 4.35058 4.45833 4.47952 4.54554 4.61361 4.65381 4.77397 4.81431 4.86582 4.89630 5.07672 5.08772 5.16544 5.16964 5.30936 5.34136 5.36958 5.43987 5.46332 5.55969 5.71930 5.77447 5.77892 5.87677 5.91695 6.25440 6.31213 6.87525 7.13212 7.38892 8.93827 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002580 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.173300 B =10848.512857 C =11858.892486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.186 4.186 3 C 0.118 3.882 4 N -0.601 5.601 5 C 0.154 3.846 6 C -0.150 4.150 7 C -0.087 4.087 8 C -0.135 4.135 9 C -0.087 4.087 10 C -0.159 4.159 11 C 0.095 3.905 12 F -0.137 7.137 13 C 0.514 3.486 14 O -0.574 6.574 15 C -0.128 4.128 16 C -0.093 4.093 17 C -0.094 4.094 18 C 0.020 3.980 19 C -0.542 4.542 20 H 0.066 0.934 21 C -0.006 4.006 22 N -0.938 5.938 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.259 1.259 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.060 0.940 44 H -0.015 1.015 45 H -0.015 1.015 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.527 -7.705 -25.064 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.205 4.205 3 C -0.003 4.003 4 N -0.333 5.333 5 C 0.032 3.968 6 C -0.152 4.152 7 C -0.105 4.105 8 C -0.153 4.153 9 C -0.104 4.104 10 C -0.178 4.178 11 C 0.075 3.925 12 F -0.115 7.115 13 C 0.304 3.696 14 O -0.454 6.454 15 C -0.167 4.167 16 C -0.131 4.131 17 C -0.132 4.132 18 C -0.017 4.017 19 C -0.580 4.580 20 H 0.084 0.916 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.183 1.183 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.003 0.997 45 H 0.003 0.997 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.912 -7.680 -24.447 30.163 hybrid contribution -0.769 0.113 0.692 1.041 sum 15.143 -7.567 -23.754 29.169 Atomic orbital electron populations 1.24129 0.95666 1.03202 0.97845 1.23250 0.96496 0.98525 1.02262 1.21206 0.92668 0.96685 0.89764 1.48070 1.12156 1.62024 1.11004 1.20293 0.80155 0.93433 1.02939 1.20332 1.00455 1.01534 0.92897 1.21179 0.94421 0.95845 0.99082 1.21553 0.99692 0.96740 0.97313 1.21420 0.97317 0.99261 0.92449 1.21450 0.97250 0.96469 1.02583 1.17680 0.92140 0.95890 0.86784 1.91366 1.67988 1.84040 1.68144 1.21154 0.90277 0.76407 0.81766 1.90661 1.56825 1.56975 1.40897 1.21715 0.93108 1.03191 0.98700 1.21231 0.96867 0.99748 0.95238 1.21438 0.94894 0.99775 0.97087 1.19036 0.95310 0.94194 0.93122 1.21745 0.98738 1.40552 0.96919 0.91623 1.26088 1.02343 0.96217 0.95698 1.70134 1.37547 1.47629 1.02497 0.85389 0.78911 0.78056 0.78335 1.19693 1.20900 1.18311 0.87302 0.87486 0.86940 0.88941 0.87418 0.89804 0.87647 0.85739 0.83544 0.82082 0.82667 0.87152 0.87113 0.93755 0.93809 0.92221 0.92169 0.99700 0.99688 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 13.86 67.78 0.94 -1.51 16 2 C -0.19 -2.88 9.74 25.65 0.25 -2.63 16 3 C 0.12 1.99 5.63 85.63 0.48 2.47 16 4 N -0.60 -13.41 2.44 -830.51 -2.03 -15.43 16 5 C 0.15 3.16 5.27 85.63 0.45 3.61 16 6 C -0.15 -3.07 5.47 -19.82 -0.11 -3.18 16 7 C -0.09 -1.79 9.67 22.26 0.22 -1.57 16 8 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 9 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 10 C -0.16 -2.31 10.03 22.31 0.22 -2.09 16 11 C 0.09 1.73 7.25 22.37 0.16 1.89 16 12 F -0.14 -2.40 13.84 44.97 0.62 -1.78 16 13 C 0.51 15.14 7.67 87.66 0.67 15.81 16 14 O -0.57 -21.51 15.56 -3.04 -0.05 -21.56 16 15 C -0.13 -3.53 4.25 29.85 0.13 -3.40 16 16 C -0.09 -3.49 4.50 30.59 0.14 -3.36 16 17 C -0.09 -3.96 5.15 30.60 0.16 -3.81 16 18 C 0.02 1.14 4.97 29.85 0.15 1.29 16 19 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 20 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 21 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 22 N -0.94 -59.37 13.29 21.45 0.28 -59.09 16 23 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 27 H 0.11 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.11 1.42 7.84 -2.91 -0.02 1.40 16 29 H 0.11 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.09 1.44 6.09 -2.38 -0.01 1.43 16 31 H 0.11 1.68 4.95 -2.39 -0.01 1.67 16 32 H 0.08 1.94 7.23 -2.39 -0.02 1.93 16 33 H 0.11 1.69 8.00 -2.39 -0.02 1.67 16 34 H 0.12 2.78 8.00 -2.91 -0.02 2.76 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.11 2.57 7.40 -2.39 -0.02 2.56 16 39 H 0.11 2.65 7.53 -2.39 -0.02 2.63 16 40 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 41 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 44 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 45 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 46 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -74.54 386.28 6.81 -67.73 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.95 Total: 13.79 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 5.00 Total: -30.74 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -1.74 Total: -74.52 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.62 Total: -1.78 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.54 6.81 -67.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588302915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.614 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds