Wall clock time and date at job start Tue Mar 31 2020 13:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47457 * 2 1 4 4 H 1.09004 * 110.05970 * 306.38586 * 3 2 1 5 5 C 1.54267 * 110.03321 * 67.80094 * 3 2 1 6 6 C 1.54886 * 104.19676 * 142.89382 * 5 3 2 7 7 C 1.54966 * 102.77874 * 322.08374 * 6 5 3 8 8 C 1.53881 * 110.03270 * 184.96920 * 3 2 1 9 9 H 1.08996 * 110.03430 * 121.38570 * 8 3 2 10 10 C 1.50694 * 110.03421 * 359.97438 * 8 3 2 11 11 O 1.21282 * 120.00122 * 274.20293 * 10 8 3 12 12 N 1.34779 * 119.99788 * 94.19596 * 10 8 3 13 13 C 1.37123 * 120.00177 * 354.91213 * 12 10 8 14 14 H 1.08006 * 119.99926 * 5.05343 * 13 12 10 15 15 C 1.38880 * 120.00207 * 185.05441 * 13 12 10 16 16 N 1.31426 * 119.99892 * 5.61062 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 185.61493 * 15 13 12 18 18 H 1.48501 * 109.47176 * 59.99851 * 17 15 13 19 19 H 1.48501 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46920 * 299.99581 * 17 15 13 21 21 C 1.39840 * 119.99814 * 174.91242 * 12 10 8 22 22 C 1.38977 * 120.04998 * 90.02750 * 21 12 10 23 23 C 1.38050 * 119.94555 * 179.97438 * 22 21 12 24 24 C 1.38544 * 120.05211 * 359.97304 * 23 22 21 25 25 F 1.35097 * 119.94516 * 180.02562 * 24 23 22 26 26 C 1.38498 * 120.10397 * 0.04425 * 24 23 22 27 27 C 1.38087 * 120.05087 * 359.95855 * 26 24 23 28 28 C 1.50704 * 120.02368 * 180.29431 * 27 26 24 29 29 H 1.08997 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46644 * 300.00112 * 1 2 3 31 31 H 1.08998 * 109.47223 * 59.99634 * 1 2 3 32 32 H 1.09006 * 109.47128 * 239.99815 * 2 1 3 33 33 H 1.08998 * 109.47223 * 120.00366 * 2 1 3 34 34 H 1.09000 * 110.48799 * 261.57376 * 5 3 2 35 35 H 1.08995 * 110.48461 * 24.21572 * 5 3 2 36 36 H 1.08998 * 110.76078 * 80.37325 * 6 5 3 37 37 H 1.09004 * 110.75647 * 203.56031 * 6 5 3 38 38 H 1.09001 * 110.47932 * 279.23378 * 7 6 5 39 39 H 1.08997 * 110.52994 * 156.56684 * 7 6 5 40 40 H 0.96999 * 119.99601 * 185.00188 * 16 15 13 41 41 H 1.07998 * 120.03009 * 359.97438 * 22 21 12 42 42 H 1.07994 * 119.97107 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.97517 * 179.97438 * 26 24 23 44 44 H 1.09001 * 109.47579 * 269.72535 * 28 27 26 45 45 H 1.09004 * 109.46874 * 29.72678 * 28 27 26 46 46 H 1.09003 * 109.46792 * 149.72398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5920 1.9974 -0.8243 5 6 1.6999 2.1232 1.3419 6 6 2.9282 3.0202 1.6348 7 6 4.1129 2.1500 1.1444 8 6 3.5736 1.4592 -0.1252 9 1 3.8698 2.0216 -1.0107 10 6 4.1003 0.0497 -0.2086 11 8 4.3259 -0.5744 0.8065 12 7 4.3204 -0.5173 -1.4113 13 6 3.9680 0.1475 -2.5576 14 1 3.5898 1.1577 -2.5015 15 6 4.0973 -0.4779 -3.7909 16 7 4.4518 -1.7420 -3.8526 17 14 3.7674 0.4774 -5.3618 18 1 4.6994 1.6305 -5.4449 19 1 3.9738 -0.4108 -6.5339 20 1 2.3672 0.9720 -5.3555 21 6 4.9082 -1.7837 -1.4902 22 6 4.1112 -2.9222 -1.4898 23 6 4.6937 -4.1713 -1.5682 24 6 6.0718 -4.2904 -1.6478 25 9 6.6395 -5.5138 -1.7250 26 6 6.8681 -3.1573 -1.6480 27 6 6.2899 -1.9057 -1.5697 28 6 7.1566 -0.6729 -1.5766 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.7993 2.7294 1.2447 35 1 1.5761 1.3776 2.1273 36 1 2.8718 3.9495 1.0680 37 1 3.0113 3.2250 2.7022 38 1 4.3793 1.4089 1.8980 39 1 4.9722 2.7754 0.9026 40 1 4.6127 -2.1590 -4.7135 41 1 3.0369 -2.8298 -1.4282 42 1 4.0748 -5.0562 -1.5675 43 1 7.9421 -3.2525 -1.7098 44 1 7.4217 -0.4092 -0.5527 45 1 8.0640 -0.8699 -2.1476 46 1 6.6111 0.1522 -2.0347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602392182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:05 Heat of formation + Delta-G solvation = -63.823321 kcal Electronic energy + Delta-G solvation = -28833.905581 eV Core-core repulsion = 25023.446490 eV Total energy + Delta-G solvation = -3810.459091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.04031 -40.07909 -38.32315 -36.36031 -34.71063 -32.67961 -31.86443 -31.52448 -29.55291 -28.04002 -27.16664 -26.18601 -24.85821 -22.57520 -22.16764 -21.03919 -20.20162 -19.95776 -18.70499 -17.36087 -16.28429 -16.27693 -15.72826 -15.29402 -14.85784 -14.73208 -14.65305 -14.14631 -14.07850 -13.56703 -13.28287 -12.90307 -12.84951 -12.68727 -12.58362 -12.40135 -12.06693 -11.98531 -11.63639 -11.38308 -11.23558 -11.16056 -11.04075 -10.84323 -10.73508 -10.68947 -10.57503 -10.48412 -10.29003 -10.20713 -10.20110 -9.97082 -9.78021 -9.44249 -8.52585 -8.10497 -7.86016 -7.56579 -6.11985 -4.05944 2.27768 2.33712 3.05801 3.14455 3.16255 3.70725 3.97559 4.51966 4.66718 4.95184 4.97388 5.11863 5.18977 5.19764 5.55644 5.66327 5.67238 5.71113 5.73440 5.92592 5.96999 5.97561 6.01247 6.02878 6.06272 6.14780 6.23240 6.25670 6.30209 6.37535 6.40979 6.43517 6.45622 6.57540 6.63045 6.66557 6.78763 6.80227 6.89735 6.99909 7.02416 7.10797 7.24060 7.31953 7.54531 7.67706 7.89829 8.37376 8.96123 9.32627 9.74820 10.57945 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.005905 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.832441 B = 4740.757544 C = 5583.499169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.067 4.067 4 H 0.071 0.929 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.097 4.097 9 H 0.090 0.910 10 C 0.485 3.515 11 O -0.591 6.591 12 N -0.420 5.420 13 C -0.338 4.338 14 H 0.106 0.894 15 C 0.039 3.961 16 N -0.856 5.856 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.255 3.745 22 C -0.046 4.046 23 C -0.154 4.154 24 C 0.063 3.937 25 F -0.160 7.160 26 C -0.151 4.151 27 C -0.062 4.062 28 C -0.103 4.103 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.272 0.728 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 4.968 3.800 6.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.087 4.087 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.118 4.118 9 H 0.108 0.892 10 C 0.275 3.725 11 O -0.476 6.476 12 N -0.136 5.136 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.167 4.167 16 N -0.493 5.493 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.163 3.837 22 C -0.066 4.066 23 C -0.174 4.174 24 C 0.044 3.956 25 F -0.139 7.139 26 C -0.170 4.170 27 C -0.064 4.064 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.215 4.450 4.082 6.432 hybrid contribution -0.068 0.112 -1.399 1.405 sum -2.283 4.562 2.684 5.765 Atomic orbital electron populations 1.21748 0.96759 1.00884 1.00897 1.21810 0.94863 0.96255 1.03686 1.21562 0.93420 0.96524 0.97146 0.91089 1.22444 0.97204 0.98285 0.97479 1.22472 0.95428 0.97944 1.00171 1.22355 0.96981 0.98406 0.97312 1.21814 0.95733 0.94776 0.99463 0.89190 1.19876 0.81414 0.88716 0.82510 1.90558 1.57291 1.64890 1.34855 1.41372 1.52999 1.13589 1.05684 1.19670 1.44742 0.98986 0.82981 0.87614 1.25199 0.96738 0.95452 0.99261 1.69888 1.43872 1.09487 1.26063 0.86106 0.79005 0.79180 0.81159 1.19930 1.20877 1.19845 1.16783 0.89664 0.84963 0.92244 1.20610 0.98811 0.90851 0.96290 1.20572 0.92482 0.97981 1.06317 1.17408 0.91508 0.79109 1.07546 1.91371 1.85676 1.42299 1.94578 1.20456 0.98680 0.91175 1.06733 1.19516 0.93532 0.93775 0.99584 1.20609 0.98076 0.96508 1.00772 0.93393 0.93386 0.93185 0.90229 0.91428 0.92322 0.91585 0.92001 0.92079 0.89965 0.92260 0.91574 0.87051 0.86673 0.86644 0.92565 0.92925 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.77 37.16 0.36 -1.74 16 2 C -0.13 -2.25 4.12 -26.74 -0.11 -2.36 16 3 C -0.07 -1.08 2.93 -89.50 -0.26 -1.35 16 4 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 5 C -0.12 -1.60 5.53 -25.07 -0.14 -1.74 16 6 C -0.12 -1.60 6.91 -24.70 -0.17 -1.77 16 7 C -0.11 -1.79 6.32 -25.03 -0.16 -1.95 16 8 C -0.10 -1.73 2.55 -90.65 -0.23 -1.96 16 9 H 0.09 1.60 6.21 -51.93 -0.32 1.28 16 10 C 0.48 10.51 4.45 -10.99 -0.05 10.46 16 11 O -0.59 -14.38 14.98 5.56 0.08 -14.30 16 12 N -0.42 -9.53 1.38 -58.97 -0.08 -9.61 16 13 C -0.34 -7.65 8.17 -14.95 -0.12 -7.77 16 14 H 0.11 2.25 5.76 -52.48 -0.30 1.95 16 15 C 0.04 0.90 5.42 -17.49 -0.09 0.81 16 16 N -0.86 -20.82 9.40 55.49 0.52 -20.30 16 17 Si 0.92 18.50 29.56 -169.99 -5.02 13.48 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 C 0.25 5.96 2.24 -83.67 -0.19 5.77 16 22 C -0.05 -1.05 8.51 -39.38 -0.33 -1.38 16 23 C -0.15 -3.26 10.02 -39.54 -0.40 -3.65 16 24 C 0.06 1.34 7.30 -39.37 -0.29 1.06 16 25 F -0.16 -3.22 17.26 2.25 0.04 -3.18 16 26 C -0.15 -3.17 9.67 -39.54 -0.38 -3.56 16 27 C -0.06 -1.39 5.54 -104.42 -0.58 -1.96 16 28 C -0.10 -2.05 9.77 36.01 0.35 -1.69 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.62 7.51 -51.93 -0.39 0.23 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.63 6.43 -51.93 -0.33 1.29 16 33 H 0.07 1.31 7.08 -51.93 -0.37 0.94 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.48 6.89 -51.93 -0.36 1.12 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 41 H 0.11 2.53 8.06 -52.49 -0.42 2.11 16 42 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 43 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 46 H 0.08 1.66 6.92 -51.93 -0.36 1.30 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -25.91 363.38 -8.82 -34.73 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.04 Total: 8.50 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.79 Total: -14.79 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.44 Total: -29.91 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.08 Total: -14.30 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -25.91 -8.82 -34.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.096 kcal (2) G-P(sol) polarization free energy of solvation -25.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds