Wall clock time and date at job start Tue Mar 31 2020 13:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47457 * 2 1 4 4 H 1.09004 * 110.05970 * 306.38586 * 3 2 1 5 5 C 1.54267 * 110.03321 * 67.80094 * 3 2 1 6 6 C 1.54886 * 104.19676 * 142.89382 * 5 3 2 7 7 C 1.54966 * 102.77874 * 322.08374 * 6 5 3 8 8 C 1.53881 * 110.03270 * 184.96920 * 3 2 1 9 9 H 1.08996 * 110.03430 * 121.38570 * 8 3 2 10 10 C 1.50694 * 110.03421 * 359.97438 * 8 3 2 11 11 O 1.21282 * 120.00122 * 274.20293 * 10 8 3 12 12 N 1.34779 * 119.99788 * 94.19596 * 10 8 3 13 13 C 1.37123 * 120.00177 * 354.91213 * 12 10 8 14 14 H 1.08006 * 119.99926 * 5.05343 * 13 12 10 15 15 C 1.38880 * 120.00207 * 185.05441 * 13 12 10 16 16 N 1.31426 * 119.99892 * 5.61062 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 185.61493 * 15 13 12 18 18 H 1.48501 * 109.47176 * 59.99851 * 17 15 13 19 19 H 1.48501 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46920 * 299.99581 * 17 15 13 21 21 C 1.39840 * 119.99814 * 174.91242 * 12 10 8 22 22 C 1.38977 * 120.04998 * 90.02750 * 21 12 10 23 23 C 1.38050 * 119.94555 * 179.97438 * 22 21 12 24 24 C 1.38544 * 120.05211 * 359.97304 * 23 22 21 25 25 F 1.35097 * 119.94516 * 180.02562 * 24 23 22 26 26 C 1.38498 * 120.10397 * 0.04425 * 24 23 22 27 27 C 1.38087 * 120.05087 * 359.95855 * 26 24 23 28 28 C 1.50704 * 120.02368 * 180.29431 * 27 26 24 29 29 H 1.08997 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46644 * 300.00112 * 1 2 3 31 31 H 1.08998 * 109.47223 * 59.99634 * 1 2 3 32 32 H 1.09006 * 109.47128 * 239.99815 * 2 1 3 33 33 H 1.08998 * 109.47223 * 120.00366 * 2 1 3 34 34 H 1.09000 * 110.48799 * 261.57376 * 5 3 2 35 35 H 1.08995 * 110.48461 * 24.21572 * 5 3 2 36 36 H 1.08998 * 110.76078 * 80.37325 * 6 5 3 37 37 H 1.09004 * 110.75647 * 203.56031 * 6 5 3 38 38 H 1.09001 * 110.47932 * 279.23378 * 7 6 5 39 39 H 1.08997 * 110.52994 * 156.56684 * 7 6 5 40 40 H 0.96999 * 119.99601 * 185.00188 * 16 15 13 41 41 H 1.07998 * 120.03009 * 359.97438 * 22 21 12 42 42 H 1.07994 * 119.97107 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.97517 * 179.97438 * 26 24 23 44 44 H 1.09001 * 109.47579 * 269.72535 * 28 27 26 45 45 H 1.09004 * 109.46874 * 29.72678 * 28 27 26 46 46 H 1.09003 * 109.46792 * 149.72398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5920 1.9974 -0.8243 5 6 1.6999 2.1232 1.3419 6 6 2.9282 3.0202 1.6348 7 6 4.1129 2.1500 1.1444 8 6 3.5736 1.4592 -0.1252 9 1 3.8698 2.0216 -1.0107 10 6 4.1003 0.0497 -0.2086 11 8 4.3259 -0.5744 0.8065 12 7 4.3204 -0.5173 -1.4113 13 6 3.9680 0.1475 -2.5576 14 1 3.5898 1.1577 -2.5015 15 6 4.0973 -0.4779 -3.7909 16 7 4.4518 -1.7420 -3.8526 17 14 3.7674 0.4774 -5.3618 18 1 4.6994 1.6305 -5.4449 19 1 3.9738 -0.4108 -6.5339 20 1 2.3672 0.9720 -5.3555 21 6 4.9082 -1.7837 -1.4902 22 6 4.1112 -2.9222 -1.4898 23 6 4.6937 -4.1713 -1.5682 24 6 6.0718 -4.2904 -1.6478 25 9 6.6395 -5.5138 -1.7250 26 6 6.8681 -3.1573 -1.6480 27 6 6.2899 -1.9057 -1.5697 28 6 7.1566 -0.6729 -1.5766 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.7993 2.7294 1.2447 35 1 1.5761 1.3776 2.1273 36 1 2.8718 3.9495 1.0680 37 1 3.0113 3.2250 2.7022 38 1 4.3793 1.4089 1.8980 39 1 4.9722 2.7754 0.9026 40 1 4.6127 -2.1590 -4.7135 41 1 3.0369 -2.8298 -1.4282 42 1 4.0748 -5.0562 -1.5675 43 1 7.9421 -3.2525 -1.7098 44 1 7.4217 -0.4092 -0.5527 45 1 8.0640 -0.8699 -2.1476 46 1 6.6111 0.1522 -2.0347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602392182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:04 Heat of formation + Delta-G solvation = -72.683818 kcal Electronic energy + Delta-G solvation = -28834.289801 eV Core-core repulsion = 25023.446490 eV Total energy + Delta-G solvation = -3810.843311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.69312 -41.69616 -39.85266 -37.90423 -36.47005 -33.95685 -33.58383 -33.25338 -31.08256 -29.52484 -28.37878 -27.84129 -26.61553 -24.08362 -23.60132 -22.66097 -21.67393 -21.32343 -20.34345 -18.97408 -17.95349 -17.84705 -17.40772 -16.66747 -16.59732 -16.38239 -16.16094 -15.60682 -15.45537 -15.08756 -14.90934 -14.40687 -14.40058 -14.18974 -14.06521 -14.02741 -13.68329 -13.29384 -13.26310 -12.87864 -12.79046 -12.74917 -12.46770 -12.35858 -12.26098 -12.14040 -12.02972 -11.91353 -11.78841 -11.58259 -11.37667 -11.32671 -11.20159 -11.08833 -10.24990 -9.87674 -9.58181 -9.27971 -7.87902 -5.85896 0.56445 0.61669 1.45483 1.49901 1.56692 2.03634 2.30504 2.89389 2.94446 3.25624 3.50402 3.73227 3.82948 3.92335 3.99895 4.07945 4.32523 4.36622 4.38226 4.49912 4.56996 4.63712 4.69628 4.74743 4.77493 4.79884 4.80771 4.89866 4.91757 4.95638 5.00441 5.08566 5.13826 5.20903 5.27871 5.31557 5.33330 5.37515 5.41883 5.49245 5.52803 5.57434 5.58118 5.65168 5.82439 5.95300 6.18179 6.61019 7.18887 7.60120 8.02054 8.80196 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.005905 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.832441 B = 4740.757544 C = 5583.499169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C -0.067 4.067 4 H 0.084 0.916 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.098 4.098 9 H 0.091 0.909 10 C 0.481 3.519 11 O -0.626 6.626 12 N -0.425 5.425 13 C -0.341 4.341 14 H 0.117 0.883 15 C 0.000 4.000 16 N -0.878 5.878 17 Si 0.977 3.023 18 H -0.267 1.267 19 H -0.294 1.294 20 H -0.267 1.267 21 C 0.237 3.763 22 C -0.066 4.066 23 C -0.155 4.155 24 C 0.057 3.943 25 F -0.153 7.153 26 C -0.151 4.151 27 C -0.083 4.083 28 C -0.094 4.094 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.264 0.736 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 6.963 3.736 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.086 4.086 4 H 0.103 0.897 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.119 4.119 9 H 0.109 0.891 10 C 0.273 3.727 11 O -0.513 6.513 12 N -0.142 5.142 13 C -0.467 4.467 14 H 0.135 0.865 15 C -0.202 4.202 16 N -0.516 5.516 17 Si 0.802 3.198 18 H -0.192 1.192 19 H -0.220 1.220 20 H -0.192 1.192 21 C 0.146 3.854 22 C -0.086 4.086 23 C -0.174 4.174 24 C 0.038 3.962 25 F -0.132 7.132 26 C -0.170 4.170 27 C -0.085 4.085 28 C -0.151 4.151 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.706 6.460 4.024 8.078 hybrid contribution 0.099 -0.589 -1.340 1.467 sum -2.607 5.872 2.683 6.962 Atomic orbital electron populations 1.21691 0.94162 1.01337 1.02373 1.21666 0.97114 0.96761 1.00428 1.21628 0.91894 0.95762 0.99332 0.89749 1.22421 0.98810 0.98285 0.95359 1.22461 0.93109 0.97860 1.01513 1.22348 0.98851 0.98279 0.95583 1.21922 0.97230 0.92184 1.00605 0.89060 1.20564 0.80458 0.89970 0.81684 1.90523 1.58667 1.66175 1.35884 1.41538 1.52974 1.13539 1.06101 1.19968 1.44320 0.99364 0.83041 0.86511 1.25873 0.96721 0.96080 1.01546 1.70053 1.45122 1.10625 1.25811 0.85204 0.79087 0.77902 0.77581 1.19209 1.22019 1.19217 1.17083 0.90484 0.85387 0.92457 1.20633 0.98305 0.91808 0.97835 1.20781 0.93072 0.98136 1.05422 1.17473 0.91554 0.79555 1.07620 1.91385 1.85496 1.41775 1.94530 1.20751 1.00065 0.90636 1.05557 1.19856 0.93563 0.95155 0.99917 1.20548 0.98341 0.94958 1.01266 0.93589 0.91275 0.92173 0.93902 0.94271 0.89447 0.92663 0.89804 0.90405 0.92667 0.91121 0.92437 0.88359 0.84614 0.84067 0.92086 0.90603 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.77 71.98 0.70 -3.13 16 2 C -0.12 -4.33 4.12 30.59 0.13 -4.20 16 3 C -0.07 -2.07 2.93 -10.07 -0.03 -2.10 16 4 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 5 C -0.11 -2.76 5.53 31.67 0.18 -2.58 16 6 C -0.11 -2.58 6.91 31.91 0.22 -2.36 16 7 C -0.11 -3.47 6.32 31.70 0.20 -3.27 16 8 C -0.10 -3.48 2.55 -10.81 -0.03 -3.51 16 9 H 0.09 3.17 6.21 -2.39 -0.01 3.16 16 10 C 0.48 21.48 4.45 87.65 0.39 21.87 16 11 O -0.63 -31.75 14.98 -3.04 -0.05 -31.79 16 12 N -0.43 -19.84 1.38 -458.88 -0.63 -20.48 16 13 C -0.34 -15.60 8.17 84.02 0.69 -14.91 16 14 H 0.12 4.93 5.76 -2.91 -0.02 4.92 16 15 C 0.00 0.02 5.42 84.91 0.46 0.48 16 16 N -0.88 -43.51 9.40 21.65 0.20 -43.31 16 17 Si 0.98 37.74 29.56 68.60 2.03 39.76 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 19 H -0.29 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 21 C 0.24 11.43 2.24 38.21 0.09 11.51 16 22 C -0.07 -3.14 8.51 22.40 0.19 -2.95 16 23 C -0.15 -6.66 10.02 22.30 0.22 -6.43 16 24 C 0.06 2.41 7.30 22.40 0.16 2.57 16 25 F -0.15 -6.01 17.26 44.97 0.78 -5.23 16 26 C -0.15 -6.28 9.67 22.30 0.22 -6.06 16 27 C -0.08 -3.73 5.54 -19.73 -0.11 -3.84 16 28 C -0.09 -3.74 9.77 71.24 0.70 -3.04 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.62 7.51 -2.39 -0.02 1.60 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.82 6.43 -2.38 -0.02 1.80 16 33 H 0.04 1.58 7.08 -2.39 -0.02 1.56 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.49 7.76 -2.39 -0.02 1.48 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 2.00 6.89 -2.39 -0.02 1.99 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.26 13.03 8.32 -92.71 -0.77 12.26 16 41 H 0.10 4.78 8.06 -2.91 -0.02 4.75 16 42 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 43 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.08 2.58 8.08 -2.38 -0.02 2.56 16 46 H 0.06 2.63 6.92 -2.39 -0.02 2.61 16 Total: -1.00 -57.33 363.38 7.67 -49.66 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.97 Total: 33.35 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.37 Total: -21.97 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -0.43 Total: -63.79 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.05 Total: -31.79 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.78 Total: -5.23 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.76 kcal Total: -57.33 7.67 -49.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.021 kcal (2) G-P(sol) polarization free energy of solvation -57.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds