Wall clock time and date at job start Tue Mar 31 2020 13:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.08994 * 110.01470 * 53.52794 * 3 2 1 5 5 C 1.54276 * 110.02893 * 292.13887 * 3 2 1 6 6 C 1.55010 * 104.13579 * 217.06483 * 5 3 2 7 7 C 1.54893 * 102.75287 * 37.95407 * 6 5 3 8 8 C 1.53871 * 110.03312 * 174.92439 * 3 2 1 9 9 H 1.08999 * 110.03100 * 238.61481 * 8 3 2 10 10 C 1.50699 * 110.03683 * 359.97438 * 8 3 2 11 11 O 1.21287 * 119.99508 * 85.98004 * 10 8 3 12 12 N 1.34768 * 120.00258 * 265.98910 * 10 8 3 13 13 C 1.37132 * 120.00061 * 3.60382 * 12 10 8 14 14 H 1.07993 * 119.99644 * 10.61932 * 13 12 10 15 15 C 1.38878 * 120.00136 * 190.62342 * 13 12 10 16 16 N 1.31427 * 119.99877 * 15.32155 * 15 13 12 17 17 Si 1.86798 * 119.99952 * 195.32649 * 15 13 12 18 18 H 1.48494 * 109.47252 * 94.94944 * 17 15 13 19 19 H 1.48500 * 109.46951 * 214.94919 * 17 15 13 20 20 H 1.48505 * 109.47247 * 334.94696 * 17 15 13 21 21 C 1.39841 * 120.00518 * 183.60626 * 12 10 8 22 22 C 1.38980 * 120.05073 * 83.51349 * 21 12 10 23 23 C 1.38038 * 119.94521 * 179.97438 * 22 21 12 24 24 C 1.38542 * 120.05376 * 359.97438 * 23 22 21 25 25 F 1.35102 * 119.94898 * 180.02562 * 24 23 22 26 26 C 1.38497 * 120.10503 * 0.02562 * 24 23 22 27 27 C 1.38083 * 120.05124 * 359.75003 * 26 24 23 28 28 C 1.50702 * 120.02725 * 180.24924 * 27 26 24 29 29 H 1.09002 * 109.47506 * 60.00439 * 1 2 3 30 30 H 1.09006 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47476 * 299.99761 * 1 2 3 32 32 H 1.09006 * 109.47401 * 239.99606 * 2 1 3 33 33 H 1.09002 * 109.47506 * 119.99561 * 2 1 3 34 34 H 1.09003 * 110.48537 * 335.73489 * 5 3 2 35 35 H 1.08997 * 110.48102 * 98.37739 * 5 3 2 36 36 H 1.08998 * 110.76595 * 279.63631 * 6 5 3 37 37 H 1.08999 * 110.74015 * 156.26030 * 6 5 3 38 38 H 1.09007 * 110.48382 * 203.36427 * 7 6 5 39 39 H 1.08999 * 110.49058 * 80.72767 * 7 6 5 40 40 H 0.97001 * 120.00055 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.02718 * 359.96009 * 22 21 12 42 42 H 1.08004 * 119.97274 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.97399 * 180.02562 * 26 24 23 44 44 H 1.08997 * 109.47018 * 263.96642 * 28 27 26 45 45 H 1.08995 * 109.47285 * 23.96990 * 28 27 26 46 46 H 1.08999 * 109.47115 * 143.96977 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5903 1.9971 0.8235 5 6 1.7011 2.1227 -1.3426 6 6 2.9307 3.0208 -1.6329 7 6 4.1137 2.1502 -1.1412 8 6 3.5732 1.4595 0.1279 9 1 3.8678 2.0224 1.0136 10 6 4.0998 0.0501 0.2143 11 8 4.3303 -0.5743 -0.7996 12 7 4.3143 -0.5165 1.4182 13 6 3.9842 0.1614 2.5636 14 1 3.3998 1.0677 2.5053 15 6 4.4016 -0.3175 3.7986 16 7 5.3473 -1.2277 3.8650 17 14 3.6187 0.3320 5.3653 18 1 2.5186 -0.5744 5.7816 19 1 4.6414 0.3954 6.4402 20 1 3.0739 1.6915 5.1197 21 6 4.8735 -1.7956 1.4994 22 6 6.2523 -1.9578 1.4352 23 6 6.8020 -3.2214 1.5161 24 6 5.9805 -4.3274 1.6617 25 9 6.5208 -5.5631 1.7412 26 6 4.6062 -4.1683 1.7258 27 6 4.0519 -2.9059 1.6500 28 6 2.5568 -2.7329 1.7255 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5789 1.3769 -2.1280 35 1 0.7998 2.7282 -1.2466 36 1 2.8732 3.9499 -1.0660 37 1 3.0176 3.2230 -2.7005 38 1 4.9728 2.7758 -0.8987 39 1 4.3810 1.4091 -1.8945 40 1 5.6391 -1.5619 4.7276 41 1 6.8932 -1.0959 1.3219 42 1 7.8735 -3.3479 1.4667 43 1 3.9677 -5.0320 1.8397 44 1 2.1467 -2.6724 0.7175 45 1 2.1183 -3.5845 2.2457 46 1 2.3240 -1.8167 2.2681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602392183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:09 Heat of formation + Delta-G solvation = -65.802215 kcal Electronic energy + Delta-G solvation = -28951.692528 eV Core-core repulsion = 25141.147626 eV Total energy + Delta-G solvation = -3810.544902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.09956 -40.09652 -38.31965 -36.38218 -34.70686 -32.76395 -31.83767 -31.59298 -29.55595 -28.06394 -27.16743 -26.26543 -24.84477 -22.71018 -22.04909 -21.07321 -20.20864 -20.01050 -18.68801 -17.34527 -16.37531 -16.21504 -15.78046 -15.30688 -14.90325 -14.78552 -14.64983 -14.16632 -14.10926 -13.56724 -13.32988 -12.91822 -12.83325 -12.65653 -12.59470 -12.48313 -12.12989 -11.99229 -11.63903 -11.51835 -11.28742 -11.09217 -10.99880 -10.85100 -10.80274 -10.67736 -10.55488 -10.48766 -10.32393 -10.20925 -10.19210 -9.91075 -9.74518 -9.43417 -8.51671 -8.08580 -7.96687 -7.51145 -6.24554 -4.05419 2.19903 2.27739 3.04409 3.15092 3.17123 3.71925 3.97496 4.52290 4.60775 4.94103 4.98470 5.10542 5.12977 5.19417 5.55206 5.60886 5.64761 5.66185 5.71446 5.93247 5.96048 5.97843 5.98105 6.02749 6.08311 6.14802 6.20467 6.24046 6.30441 6.37364 6.38228 6.39158 6.46653 6.54385 6.59618 6.65394 6.76377 6.80358 6.87786 6.95911 7.01832 7.06395 7.19995 7.31853 7.53631 7.62623 7.85560 8.36697 8.96547 9.33539 9.76877 10.55601 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.005992 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.748232 B = 4671.552230 C = 5527.611646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C -0.069 4.069 4 H 0.070 0.930 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.097 4.097 9 H 0.092 0.908 10 C 0.483 3.517 11 O -0.593 6.593 12 N -0.416 5.416 13 C -0.345 4.345 14 H 0.106 0.894 15 C 0.043 3.957 16 N -0.851 5.851 17 Si 0.914 3.086 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.239 3.761 22 C -0.037 4.037 23 C -0.157 4.157 24 C 0.068 3.932 25 F -0.159 7.159 26 C -0.156 4.156 27 C -0.063 4.063 28 C -0.107 4.107 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.271 0.729 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 3.337 -3.715 7.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.089 4.089 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.118 4.118 9 H 0.110 0.890 10 C 0.274 3.726 11 O -0.478 6.478 12 N -0.133 5.133 13 C -0.470 4.470 14 H 0.124 0.876 15 C -0.164 4.164 16 N -0.487 5.487 17 Si 0.741 3.259 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.148 3.852 22 C -0.056 4.056 23 C -0.176 4.176 24 C 0.049 3.951 25 F -0.138 7.138 26 C -0.175 4.175 27 C -0.065 4.065 28 C -0.163 4.163 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.802 2.883 -4.015 6.891 hybrid contribution -0.071 0.058 1.361 1.364 sum -4.872 2.941 -2.654 6.279 Atomic orbital electron populations 1.21757 0.96749 1.00898 1.00968 1.21996 0.94928 0.96423 1.04091 1.21587 0.93570 0.96499 0.97194 0.91129 1.22462 0.97190 0.98271 0.97438 1.22485 0.95428 0.97964 1.00148 1.22336 0.97000 0.98393 0.97285 1.21801 0.95507 0.94856 0.99628 0.88972 1.19920 0.81717 0.88453 0.82530 1.90554 1.57463 1.64790 1.34998 1.41345 1.54646 1.11643 1.05658 1.19625 1.34560 1.10188 0.82675 0.87601 1.25196 0.95211 0.96657 0.99289 1.69951 1.24255 1.28408 1.26061 0.86094 0.79034 0.79244 0.81529 1.20270 1.20920 1.19358 1.16896 0.90533 0.84391 0.93379 1.20661 0.94285 0.95349 0.95312 1.20616 0.98853 0.91830 1.06347 1.17452 0.91749 0.79042 1.06885 1.91381 1.86748 1.41125 1.94508 1.20519 0.92738 0.97318 1.06932 1.19604 0.95903 0.91600 0.99394 1.20767 0.91520 1.02692 1.01365 0.93359 0.93352 0.93175 0.91379 0.89604 0.91601 0.92337 0.91966 0.92098 0.92266 0.90018 0.91721 0.86775 0.86441 0.86464 0.92101 0.93068 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.77 37.15 0.36 -1.65 16 2 C -0.14 -2.31 3.99 -26.74 -0.11 -2.41 16 3 C -0.07 -1.10 2.92 -89.50 -0.26 -1.36 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 5 C -0.12 -1.59 5.54 -25.00 -0.14 -1.72 16 6 C -0.12 -1.62 6.91 -24.67 -0.17 -1.79 16 7 C -0.11 -1.82 6.32 -25.07 -0.16 -1.98 16 8 C -0.10 -1.75 2.46 -90.66 -0.22 -1.98 16 9 H 0.09 1.70 6.40 -51.93 -0.33 1.37 16 10 C 0.48 10.57 4.45 -10.99 -0.05 10.52 16 11 O -0.59 -14.48 14.99 5.55 0.08 -14.40 16 12 N -0.42 -9.48 1.56 -58.97 -0.09 -9.57 16 13 C -0.34 -7.83 7.56 -14.94 -0.11 -7.95 16 14 H 0.11 2.28 6.09 -52.49 -0.32 1.96 16 15 C 0.04 1.00 5.28 -17.49 -0.09 0.91 16 16 N -0.85 -20.79 9.97 55.49 0.55 -20.23 16 17 Si 0.91 18.50 29.58 -169.99 -5.03 13.47 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C 0.24 5.57 2.27 -83.67 -0.19 5.38 16 22 C -0.04 -0.84 8.48 -39.38 -0.33 -1.17 16 23 C -0.16 -3.29 10.02 -39.54 -0.40 -3.69 16 24 C 0.07 1.42 7.30 -39.37 -0.29 1.13 16 25 F -0.16 -3.14 17.27 2.25 0.04 -3.11 16 26 C -0.16 -3.23 9.65 -39.54 -0.38 -3.61 16 27 C -0.06 -1.39 5.81 -104.42 -0.61 -2.00 16 28 C -0.11 -2.08 8.62 36.01 0.31 -1.77 16 29 H 0.05 0.60 7.51 -51.93 -0.39 0.21 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.29 7.10 -51.93 -0.37 0.92 16 33 H 0.09 1.62 3.69 -51.93 -0.19 1.43 16 34 H 0.07 0.94 7.76 -51.93 -0.40 0.54 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.08 1.49 6.90 -51.93 -0.36 1.13 16 40 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.11 2.61 8.06 -52.49 -0.42 2.19 16 42 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 43 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.06 1.14 7.72 -51.93 -0.40 0.74 16 45 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 46 H 0.08 1.73 5.62 -51.93 -0.29 1.44 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -26.01 358.37 -8.72 -34.73 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.84 Total: 8.84 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -2.84 Total: -15.13 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 0.46 Total: -29.80 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.01 -8.72 -34.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.074 kcal (2) G-P(sol) polarization free energy of solvation -26.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds