Wall clock time and date at job start Tue Mar 31 2020 13:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.08994 * 110.01470 * 53.52794 * 3 2 1 5 5 C 1.54276 * 110.02893 * 292.13887 * 3 2 1 6 6 C 1.55010 * 104.13579 * 217.06483 * 5 3 2 7 7 C 1.54893 * 102.75287 * 37.95407 * 6 5 3 8 8 C 1.53871 * 110.03312 * 174.92439 * 3 2 1 9 9 H 1.08999 * 110.03100 * 238.61481 * 8 3 2 10 10 C 1.50699 * 110.03683 * 359.97438 * 8 3 2 11 11 O 1.21287 * 119.99508 * 85.98004 * 10 8 3 12 12 N 1.34768 * 120.00258 * 265.98910 * 10 8 3 13 13 C 1.37132 * 120.00061 * 3.60382 * 12 10 8 14 14 H 1.07993 * 119.99644 * 10.61932 * 13 12 10 15 15 C 1.38878 * 120.00136 * 190.62342 * 13 12 10 16 16 N 1.31427 * 119.99877 * 15.32155 * 15 13 12 17 17 Si 1.86798 * 119.99952 * 195.32649 * 15 13 12 18 18 H 1.48494 * 109.47252 * 94.94944 * 17 15 13 19 19 H 1.48500 * 109.46951 * 214.94919 * 17 15 13 20 20 H 1.48505 * 109.47247 * 334.94696 * 17 15 13 21 21 C 1.39841 * 120.00518 * 183.60626 * 12 10 8 22 22 C 1.38980 * 120.05073 * 83.51349 * 21 12 10 23 23 C 1.38038 * 119.94521 * 179.97438 * 22 21 12 24 24 C 1.38542 * 120.05376 * 359.97438 * 23 22 21 25 25 F 1.35102 * 119.94898 * 180.02562 * 24 23 22 26 26 C 1.38497 * 120.10503 * 0.02562 * 24 23 22 27 27 C 1.38083 * 120.05124 * 359.75003 * 26 24 23 28 28 C 1.50702 * 120.02725 * 180.24924 * 27 26 24 29 29 H 1.09002 * 109.47506 * 60.00439 * 1 2 3 30 30 H 1.09006 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47476 * 299.99761 * 1 2 3 32 32 H 1.09006 * 109.47401 * 239.99606 * 2 1 3 33 33 H 1.09002 * 109.47506 * 119.99561 * 2 1 3 34 34 H 1.09003 * 110.48537 * 335.73489 * 5 3 2 35 35 H 1.08997 * 110.48102 * 98.37739 * 5 3 2 36 36 H 1.08998 * 110.76595 * 279.63631 * 6 5 3 37 37 H 1.08999 * 110.74015 * 156.26030 * 6 5 3 38 38 H 1.09007 * 110.48382 * 203.36427 * 7 6 5 39 39 H 1.08999 * 110.49058 * 80.72767 * 7 6 5 40 40 H 0.97001 * 120.00055 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.02718 * 359.96009 * 22 21 12 42 42 H 1.08004 * 119.97274 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.97399 * 180.02562 * 26 24 23 44 44 H 1.08997 * 109.47018 * 263.96642 * 28 27 26 45 45 H 1.08995 * 109.47285 * 23.96990 * 28 27 26 46 46 H 1.08999 * 109.47115 * 143.96977 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5903 1.9971 0.8235 5 6 1.7011 2.1227 -1.3426 6 6 2.9307 3.0208 -1.6329 7 6 4.1137 2.1502 -1.1412 8 6 3.5732 1.4595 0.1279 9 1 3.8678 2.0224 1.0136 10 6 4.0998 0.0501 0.2143 11 8 4.3303 -0.5743 -0.7996 12 7 4.3143 -0.5165 1.4182 13 6 3.9842 0.1614 2.5636 14 1 3.3998 1.0677 2.5053 15 6 4.4016 -0.3175 3.7986 16 7 5.3473 -1.2277 3.8650 17 14 3.6187 0.3320 5.3653 18 1 2.5186 -0.5744 5.7816 19 1 4.6414 0.3954 6.4402 20 1 3.0739 1.6915 5.1197 21 6 4.8735 -1.7956 1.4994 22 6 6.2523 -1.9578 1.4352 23 6 6.8020 -3.2214 1.5161 24 6 5.9805 -4.3274 1.6617 25 9 6.5208 -5.5631 1.7412 26 6 4.6062 -4.1683 1.7258 27 6 4.0519 -2.9059 1.6500 28 6 2.5568 -2.7329 1.7255 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5789 1.3769 -2.1280 35 1 0.7998 2.7282 -1.2466 36 1 2.8732 3.9499 -1.0660 37 1 3.0176 3.2230 -2.7005 38 1 4.9728 2.7758 -0.8987 39 1 4.3810 1.4091 -1.8945 40 1 5.6391 -1.5619 4.7276 41 1 6.8932 -1.0959 1.3219 42 1 7.8735 -3.3479 1.4667 43 1 3.9677 -5.0320 1.8397 44 1 2.1467 -2.6724 0.7175 45 1 2.1183 -3.5845 2.2457 46 1 2.3240 -1.8167 2.2681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602392183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:08 Heat of formation + Delta-G solvation = -75.000566 kcal Electronic energy + Delta-G solvation = -28952.091398 eV Core-core repulsion = 25141.147626 eV Total energy + Delta-G solvation = -3810.943772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.72941 -41.70975 -39.83870 -37.91594 -36.46595 -34.04233 -33.49281 -33.31469 -31.08613 -29.53856 -28.35350 -27.90020 -26.60039 -24.19391 -23.44083 -22.67256 -21.73090 -21.31780 -20.32791 -18.94870 -18.01628 -17.78893 -17.44498 -16.68160 -16.62616 -16.41599 -16.15881 -15.60427 -15.48011 -15.03694 -14.96603 -14.41318 -14.31464 -14.20583 -14.13389 -13.96379 -13.71782 -13.30094 -13.25045 -12.97336 -12.85098 -12.63963 -12.46220 -12.36674 -12.20378 -12.08626 -12.04762 -11.91559 -11.78855 -11.54568 -11.37236 -11.22702 -11.21996 -11.03161 -10.24530 -9.86331 -9.66046 -9.21853 -8.00414 -5.85643 0.50332 0.57411 1.42738 1.50118 1.58157 2.04077 2.30080 2.87287 2.91915 3.24133 3.45877 3.74786 3.83089 3.94564 3.96871 4.05114 4.33179 4.36483 4.42324 4.52134 4.57944 4.61439 4.72934 4.74711 4.78384 4.80564 4.82733 4.89773 4.92890 4.95298 5.04616 5.06539 5.13725 5.24351 5.27875 5.30715 5.34462 5.37976 5.41882 5.48376 5.54299 5.57531 5.60324 5.69201 5.82567 5.91815 6.14985 6.60335 7.19114 7.60567 8.03762 8.78115 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.005992 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.748232 B = 4671.552230 C = 5527.611646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C -0.069 4.069 4 H 0.085 0.915 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.098 4.098 9 H 0.088 0.912 10 C 0.479 3.521 11 O -0.627 6.627 12 N -0.422 5.422 13 C -0.347 4.347 14 H 0.116 0.884 15 C 0.006 3.994 16 N -0.875 5.875 17 Si 0.971 3.029 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.255 1.255 21 C 0.220 3.780 22 C -0.059 4.059 23 C -0.157 4.157 24 C 0.062 3.938 25 F -0.151 7.151 26 C -0.156 4.156 27 C -0.082 4.082 28 C -0.097 4.097 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.265 0.735 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 4.466 -3.511 8.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C -0.088 4.088 4 H 0.103 0.897 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.119 4.119 9 H 0.106 0.894 10 C 0.271 3.729 11 O -0.514 6.514 12 N -0.138 5.138 13 C -0.472 4.472 14 H 0.134 0.866 15 C -0.198 4.198 16 N -0.512 5.512 17 Si 0.796 3.204 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.179 1.179 21 C 0.129 3.871 22 C -0.079 4.079 23 C -0.176 4.176 24 C 0.043 3.957 25 F -0.130 7.130 26 C -0.175 4.175 27 C -0.084 4.084 28 C -0.153 4.153 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.699 4.026 -3.814 8.697 hybrid contribution 0.590 -0.349 1.256 1.430 sum -6.109 3.677 -2.559 7.576 Atomic orbital electron populations 1.21699 0.94133 1.01548 1.02276 1.21885 0.97192 0.96538 1.01480 1.21652 0.91594 0.96316 0.99228 0.89705 1.22440 0.98593 0.98241 0.95527 1.22472 0.93227 0.97865 1.01402 1.22333 0.98803 0.98283 0.95746 1.21898 0.97446 0.92241 1.00358 0.89374 1.20588 0.80868 0.89644 0.81769 1.90520 1.58836 1.66027 1.36014 1.41503 1.54531 1.11704 1.06013 1.19891 1.34187 1.10401 0.82746 0.86647 1.25856 0.95455 0.96952 1.01525 1.70104 1.25433 1.29710 1.25956 0.85216 0.77770 0.79288 0.78102 1.20502 1.21882 1.17867 1.17201 0.90956 0.85203 0.93735 1.20692 0.94413 0.95767 0.96997 1.20821 1.00123 0.91267 1.05391 1.17515 0.91999 0.79280 1.06893 1.91396 1.86657 1.40487 1.94448 1.20829 0.93110 0.97804 1.05740 1.19943 0.97122 0.91775 0.99586 1.20691 0.90169 1.02967 1.01494 0.91732 0.93152 0.92054 0.94329 0.91895 0.92599 0.89432 0.89922 0.90488 0.91641 0.92702 0.92423 0.88116 0.84305 0.83834 0.92003 0.90748 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.77 71.98 0.70 -2.84 16 2 C -0.13 -4.42 3.99 30.59 0.12 -4.30 16 3 C -0.07 -2.08 2.92 -10.07 -0.03 -2.11 16 4 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 5 C -0.11 -2.73 5.54 31.71 0.18 -2.55 16 6 C -0.11 -2.66 6.91 31.93 0.22 -2.44 16 7 C -0.11 -3.64 6.32 31.67 0.20 -3.44 16 8 C -0.10 -3.55 2.46 -10.82 -0.03 -3.57 16 9 H 0.09 3.21 6.40 -2.39 -0.02 3.19 16 10 C 0.48 21.54 4.45 87.66 0.39 21.93 16 11 O -0.63 -31.91 14.99 -3.05 -0.05 -31.96 16 12 N -0.42 -19.65 1.56 -458.88 -0.72 -20.37 16 13 C -0.35 -15.83 7.56 84.02 0.64 -15.20 16 14 H 0.12 4.92 6.09 -2.91 -0.02 4.90 16 15 C 0.01 0.28 5.28 84.91 0.45 0.73 16 16 N -0.88 -43.43 9.97 21.65 0.22 -43.22 16 17 Si 0.97 37.58 29.58 68.60 2.03 39.61 16 18 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 21 C 0.22 10.53 2.27 38.21 0.09 10.62 16 22 C -0.06 -2.80 8.48 22.40 0.19 -2.61 16 23 C -0.16 -6.64 10.02 22.29 0.22 -6.42 16 24 C 0.06 2.58 7.30 22.40 0.16 2.74 16 25 F -0.15 -5.81 17.27 44.97 0.78 -5.04 16 26 C -0.16 -6.36 9.65 22.29 0.22 -6.15 16 27 C -0.08 -3.65 5.81 -19.73 -0.11 -3.77 16 28 C -0.10 -3.75 8.62 71.24 0.61 -3.13 16 29 H 0.06 1.42 7.51 -2.39 -0.02 1.41 16 30 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.48 7.10 -2.38 -0.02 1.46 16 33 H 0.06 2.38 3.69 -2.39 -0.01 2.37 16 34 H 0.06 1.50 7.76 -2.39 -0.02 1.48 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.05 2.05 6.90 -2.39 -0.02 2.03 16 40 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 41 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.14 5.11 8.06 -2.91 -0.02 5.09 16 43 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.06 2.34 7.72 -2.39 -0.02 2.32 16 45 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 46 H 0.07 2.91 5.62 -2.39 -0.01 2.90 16 Total: -1.00 -57.15 358.37 7.46 -49.69 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.98 Total: 33.79 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 4.22 Total: -22.51 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.50 Total: -63.58 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.96 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.78 Total: -5.04 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -57.15 7.46 -49.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.311 kcal (2) G-P(sol) polarization free energy of solvation -57.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds