Wall clock time and date at job start Tue Mar 31 2020 13:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.39464 * 120.00209 * 179.97438 * 2 1 3 13 13 C 1.39094 * 119.92031 * 179.72697 * 12 2 1 14 14 C 1.37747 * 120.08280 * 179.76286 * 13 12 2 15 15 C 1.39774 * 119.91207 * 0.51110 * 14 13 12 16 16 C 1.47390 * 120.07687 * 179.71895 * 15 14 13 17 17 N 1.29800 * 120.00046 * 0.02576 * 16 15 14 18 18 N 1.40101 * 120.00164 * 179.97438 * 17 16 15 19 19 C 1.34771 * 120.00284 * 179.97438 * 18 17 16 20 20 O 1.21314 * 119.99995 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.00225 * 180.02562 * 19 18 17 22 22 C 1.53008 * 109.47082 * 300.00008 * 21 19 18 23 23 C 1.52999 * 109.47254 * 60.00325 * 21 19 18 24 24 O 1.42902 * 109.47178 * 180.02562 * 21 19 18 25 25 C 1.39773 * 119.84264 * 359.74040 * 15 14 13 26 26 C 1.37738 * 119.91684 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07995 * 119.95951 * 359.97438 * 13 12 2 34 34 H 1.07992 * 120.04176 * 180.24813 * 14 13 12 35 35 H 1.08002 * 120.00180 * 180.02562 * 16 15 14 36 36 H 0.97001 * 120.00058 * 359.97438 * 18 17 16 37 37 H 1.09006 * 109.46608 * 59.99958 * 22 21 19 38 38 H 1.09000 * 109.46879 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.47029 * 300.00352 * 22 21 19 40 40 H 1.08995 * 109.47052 * 59.99613 * 23 21 19 41 41 H 1.08999 * 109.47123 * 180.02562 * 23 21 19 42 42 H 1.09006 * 109.46560 * 300.00129 * 23 21 19 43 43 H 0.96703 * 114.00043 * 180.02562 * 24 21 19 44 44 H 1.07994 * 120.03977 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.95825 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1624 -1.2078 0.0005 13 6 3.5533 -1.2058 -0.0052 14 6 4.2455 -2.3967 0.0002 15 6 3.5483 -3.6081 0.0007 16 6 4.2852 -4.8846 0.0003 17 7 5.5832 -4.8845 0.0000 18 7 6.2838 -6.0978 0.0001 19 6 7.6315 -6.0978 -0.0008 20 8 8.2381 -5.0472 -0.0012 21 6 8.3851 -7.4029 -0.0012 22 6 8.0163 -8.2052 1.2483 23 6 8.0147 -8.2053 -1.2502 24 8 9.7900 -7.1418 -0.0016 25 6 2.1505 -3.6062 0.0012 26 6 1.4652 -2.4114 0.0006 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0913 -0.2694 -0.0105 34 1 5.3254 -2.3944 -0.0002 35 1 3.7453 -5.8199 0.0003 36 1 5.7988 -6.9379 0.0008 37 1 6.9445 -8.4044 1.2490 38 1 8.5609 -9.1494 1.2478 39 1 8.2801 -7.6336 2.1381 40 1 8.2774 -7.6337 -2.1403 41 1 8.5594 -9.1494 -1.2503 42 1 6.9430 -8.4044 -1.2495 43 1 10.3382 -7.9384 -0.0023 44 1 1.6086 -4.5403 0.0012 45 1 0.3853 -2.4091 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785459597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:20 Heat of formation + Delta-G solvation = -9.460423 kcal Electronic energy + Delta-G solvation = -25566.427399 eV Core-core repulsion = 21778.245622 eV Total energy + Delta-G solvation = -3788.181777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25826 -39.05452 -37.55014 -36.56060 -35.44475 -33.33127 -32.70799 -31.46812 -30.60728 -28.87933 -27.96913 -27.83632 -25.50328 -24.28390 -23.16451 -21.98129 -21.23424 -20.39359 -19.64393 -17.78135 -17.25160 -16.71688 -16.57788 -16.37000 -15.56222 -15.31624 -15.03487 -14.67770 -14.23927 -14.15631 -14.04980 -13.84632 -13.75295 -13.01753 -12.93026 -12.90966 -12.80244 -12.62815 -12.26038 -12.16245 -11.98690 -11.74510 -11.58788 -11.36195 -11.28397 -10.92086 -10.73969 -10.61554 -10.38806 -10.16621 -10.02709 -9.85871 -9.76353 -9.41048 -8.52862 -8.47655 -8.38825 -6.50965 -6.05105 -4.19244 1.27632 2.05778 2.23533 2.40647 3.00571 3.27114 3.34703 3.39031 3.81409 4.02743 4.10206 4.22171 4.39803 4.42604 4.52513 4.76095 4.89606 4.98530 5.07604 5.10096 5.20502 5.23294 5.38854 5.46046 5.47864 5.62171 5.67082 5.81090 5.94799 6.01648 6.19639 6.24209 6.31479 6.54551 6.84988 6.89956 6.95740 7.03150 7.16042 7.19930 7.28961 7.46034 7.59358 7.78577 8.09590 8.15770 8.34129 8.38594 8.88431 9.47852 10.94388 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.002465 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.171721 B =11355.887182 C =12624.369071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.606 5.606 3 C 0.245 3.755 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.261 3.739 13 C -0.196 4.196 14 C -0.024 4.024 15 C -0.159 4.159 16 C 0.145 3.855 17 N -0.257 5.257 18 N -0.584 5.584 19 C 0.538 3.462 20 O -0.481 6.481 21 C 0.121 3.879 22 C -0.178 4.178 23 C -0.179 4.179 24 O -0.533 6.533 25 C -0.036 4.036 26 C -0.229 4.229 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.377 0.623 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.383 0.617 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 -26.088 3.066 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.308 5.308 3 C 0.125 3.875 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.150 3.850 13 C -0.218 4.218 14 C -0.045 4.045 15 C -0.165 4.165 16 C -0.063 4.063 17 N -0.062 5.062 18 N -0.328 5.328 19 C 0.322 3.678 20 O -0.350 6.350 21 C 0.075 3.925 22 C -0.236 4.236 23 C -0.236 4.236 24 O -0.338 6.338 25 C -0.058 4.058 26 C -0.252 4.252 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.215 0.785 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.190 -23.865 3.115 24.167 hybrid contribution -0.611 -1.287 -1.053 1.771 sum 1.578 -25.151 2.062 25.285 Atomic orbital electron populations 1.21544 0.81161 1.01322 1.00789 1.47242 1.04760 1.04916 1.73925 1.19405 0.92259 0.78473 0.97317 1.21518 1.36720 1.06543 0.92443 0.92193 1.24956 0.95279 0.96271 0.97501 1.69917 1.38144 1.14344 1.30829 0.86505 0.77716 0.78740 0.84594 1.20638 1.21017 1.19728 1.18161 0.91613 0.86049 0.89137 1.20911 0.92471 0.99139 1.09319 1.21102 0.99779 0.90774 0.92829 1.17845 0.92203 0.90129 1.16276 1.24449 0.90285 0.97623 0.93971 1.75152 1.09254 1.05257 1.16517 1.46820 1.06234 1.05060 1.74682 1.19810 0.80439 0.90614 0.76960 1.90768 1.67058 1.32821 1.44357 1.20934 0.83726 0.91744 0.96145 1.22525 1.02806 1.00603 0.97687 1.22524 1.02809 1.00605 0.97709 1.86681 1.14041 1.35978 1.97129 1.20691 0.92194 0.97053 0.95833 1.20463 0.99237 0.91066 1.14442 0.93685 0.92517 0.91769 0.94941 0.94317 0.92545 0.84523 0.85600 0.87455 0.78539 0.91096 0.90677 0.90789 0.90772 0.90673 0.91088 0.76894 0.86652 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.57 10.22 59.85 0.61 2.18 16 2 N -0.61 -12.42 2.99 -180.94 -0.54 -12.96 16 3 C 0.24 6.02 4.94 -5.19 -0.03 5.99 16 4 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.26 5.05 6.56 -83.75 -0.55 4.50 16 13 C -0.20 -3.96 9.18 -39.44 -0.36 -4.33 16 14 C -0.02 -0.43 9.57 -39.19 -0.37 -0.81 16 15 C -0.16 -2.44 5.87 -105.02 -0.62 -3.05 16 16 C 0.15 1.88 10.74 -14.69 -0.16 1.72 16 17 N -0.26 -3.94 10.15 32.15 0.33 -3.62 16 18 N -0.58 -7.05 6.05 31.22 0.19 -6.86 16 19 C 0.54 7.51 6.67 -10.99 -0.07 7.43 16 20 O -0.48 -9.56 16.84 -14.38 -0.24 -9.80 16 21 C 0.12 1.06 1.25 -91.77 -0.11 0.94 16 22 C -0.18 -1.02 8.71 37.16 0.32 -0.70 16 23 C -0.18 -1.05 8.71 37.16 0.32 -0.72 16 24 O -0.53 -5.37 12.51 -55.14 -0.69 -6.06 16 25 C -0.04 -0.50 9.78 -39.19 -0.38 -0.88 16 26 C -0.23 -3.61 9.19 -39.45 -0.36 -3.98 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.76 6.18 -51.93 -0.32 0.44 16 29 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 30 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 31 H 0.04 1.01 6.19 -51.93 -0.32 0.69 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.14 3.08 6.12 -52.49 -0.32 2.76 16 34 H 0.13 2.37 7.55 -52.49 -0.40 1.97 16 35 H 0.11 0.93 8.02 -52.49 -0.42 0.51 16 36 H 0.38 2.86 7.49 -182.60 -1.37 1.50 16 37 H 0.07 0.30 7.56 -51.93 -0.39 -0.09 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.31 7.57 -51.93 -0.39 -0.08 16 43 H 0.38 1.65 9.05 45.56 0.41 2.07 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 45 H 0.12 1.63 6.12 -52.49 -0.32 1.31 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -35.96 381.43 -8.42 -44.38 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.74 Total: 2.49 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.18 Total: -4.84 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.71 Total: -48.37 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.93 Total: -15.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.96 -8.42 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785459597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.916 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds