Wall clock time and date at job start Tue Mar 31 2020 13:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.39464 * 120.00209 * 179.97438 * 2 1 3 13 13 C 1.39094 * 119.92031 * 179.72697 * 12 2 1 14 14 C 1.37747 * 120.08280 * 179.76286 * 13 12 2 15 15 C 1.39774 * 119.91207 * 0.51110 * 14 13 12 16 16 C 1.47390 * 120.07687 * 179.71895 * 15 14 13 17 17 N 1.29800 * 120.00046 * 0.02576 * 16 15 14 18 18 N 1.40101 * 120.00164 * 179.97438 * 17 16 15 19 19 C 1.34771 * 120.00284 * 179.97438 * 18 17 16 20 20 O 1.21314 * 119.99995 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.00225 * 180.02562 * 19 18 17 22 22 C 1.53008 * 109.47082 * 300.00008 * 21 19 18 23 23 C 1.52999 * 109.47254 * 60.00325 * 21 19 18 24 24 O 1.42902 * 109.47178 * 180.02562 * 21 19 18 25 25 C 1.39773 * 119.84264 * 359.74040 * 15 14 13 26 26 C 1.37738 * 119.91684 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 29 29 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 30 30 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 31 31 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 32 32 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 33 33 H 1.07995 * 119.95951 * 359.97438 * 13 12 2 34 34 H 1.07992 * 120.04176 * 180.24813 * 14 13 12 35 35 H 1.08002 * 120.00180 * 180.02562 * 16 15 14 36 36 H 0.97001 * 120.00058 * 359.97438 * 18 17 16 37 37 H 1.09006 * 109.46608 * 59.99958 * 22 21 19 38 38 H 1.09000 * 109.46879 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.47029 * 300.00352 * 22 21 19 40 40 H 1.08995 * 109.47052 * 59.99613 * 23 21 19 41 41 H 1.08999 * 109.47123 * 180.02562 * 23 21 19 42 42 H 1.09006 * 109.46560 * 300.00129 * 23 21 19 43 43 H 0.96703 * 114.00043 * 180.02562 * 24 21 19 44 44 H 1.07994 * 120.03977 * 179.97438 * 25 15 14 45 45 H 1.07994 * 119.95825 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2001 -3.4962 11 1 3.5561 2.2195 -4.3044 12 6 2.1624 -1.2078 0.0005 13 6 3.5533 -1.2058 -0.0052 14 6 4.2455 -2.3967 0.0002 15 6 3.5483 -3.6081 0.0007 16 6 4.2852 -4.8846 0.0003 17 7 5.5832 -4.8845 0.0000 18 7 6.2838 -6.0978 0.0001 19 6 7.6315 -6.0978 -0.0008 20 8 8.2381 -5.0472 -0.0012 21 6 8.3851 -7.4029 -0.0012 22 6 8.0163 -8.2052 1.2483 23 6 8.0147 -8.2053 -1.2502 24 8 9.7900 -7.1418 -0.0016 25 6 2.1505 -3.6062 0.0012 26 6 1.4652 -2.4114 0.0006 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0285 0.5138 31 1 3.1500 1.1384 0.5139 32 1 4.0302 4.4439 -0.8505 33 1 4.0913 -0.2694 -0.0105 34 1 5.3254 -2.3944 -0.0002 35 1 3.7453 -5.8199 0.0003 36 1 5.7988 -6.9379 0.0008 37 1 6.9445 -8.4044 1.2490 38 1 8.5609 -9.1494 1.2478 39 1 8.2801 -7.6336 2.1381 40 1 8.2774 -7.6337 -2.1403 41 1 8.5594 -9.1494 -1.2503 42 1 6.9430 -8.4044 -1.2495 43 1 10.3382 -7.9384 -0.0023 44 1 1.6086 -4.5403 0.0012 45 1 0.3853 -2.4091 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785459597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:19 Heat of formation + Delta-G solvation = -35.962198 kcal Electronic energy + Delta-G solvation = -25567.576602 eV Core-core repulsion = 21778.245622 eV Total energy + Delta-G solvation = -3789.330980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21132 -40.42327 -38.43826 -37.78355 -36.81795 -34.85092 -34.11436 -32.43077 -31.99215 -30.28284 -29.48970 -28.38566 -26.97747 -25.49338 -24.54805 -23.31997 -22.55725 -21.39562 -20.94558 -18.78615 -18.66217 -18.13960 -17.93843 -17.39499 -16.78976 -16.45645 -16.29578 -15.98026 -15.84871 -15.34944 -15.14397 -14.89126 -14.63914 -14.47151 -14.27619 -14.07725 -13.85790 -13.48814 -13.20904 -13.19213 -13.05426 -13.02100 -12.79172 -12.76265 -12.63583 -12.55806 -12.54701 -12.18935 -11.80614 -11.54430 -11.22124 -11.09054 -10.91060 -10.83314 -10.65424 -9.76795 -9.74843 -8.36614 -7.80226 -6.39468 0.09513 0.70842 1.28463 1.34156 1.34308 1.37042 1.47120 1.90668 2.32235 2.57844 3.04500 3.18110 3.21638 3.40653 3.65927 3.81495 3.87699 4.00301 4.18237 4.30559 4.39702 4.58242 4.59398 4.61871 4.67475 4.73237 4.74116 4.82279 4.84908 4.89901 4.99704 5.06772 5.08064 5.15646 5.19653 5.30948 5.54024 5.63181 5.66338 5.73938 6.03969 6.07643 6.09314 6.43828 6.55333 6.78961 6.81395 6.86858 7.32093 7.44878 8.81059 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.002465 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.171721 B =11355.887182 C =12624.369071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.622 5.622 3 C 0.262 3.738 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.234 3.766 13 C -0.227 4.227 14 C -0.039 4.039 15 C -0.153 4.153 16 C 0.158 3.842 17 N -0.313 5.313 18 N -0.566 5.566 19 C 0.525 3.475 20 O -0.559 6.559 21 C 0.125 3.875 22 C -0.172 4.172 23 C -0.173 4.173 24 O -0.567 6.567 25 C -0.014 4.014 26 C -0.218 4.218 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.009 0.991 32 H 0.267 0.733 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.403 0.597 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.405 0.595 44 H 0.176 0.824 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -31.169 2.364 31.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.328 5.328 3 C 0.140 3.860 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.126 3.874 13 C -0.250 4.250 14 C -0.060 4.060 15 C -0.159 4.159 16 C -0.050 4.050 17 N -0.118 5.118 18 N -0.311 5.311 19 C 0.313 3.687 20 O -0.433 6.433 21 C 0.080 3.920 22 C -0.230 4.230 23 C -0.230 4.230 24 O -0.377 6.377 25 C -0.035 4.035 26 C -0.241 4.241 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.184 0.816 36 H 0.245 0.755 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.258 0.742 44 H 0.193 0.807 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.134 -29.040 2.415 29.140 hybrid contribution 0.160 0.116 -0.788 0.812 sum 0.026 -28.923 1.627 28.969 Atomic orbital electron populations 1.21720 0.78603 1.03139 1.01331 1.47062 1.06172 1.03749 1.75784 1.18857 0.91224 0.80399 0.95523 1.21762 1.36378 1.06416 0.93363 0.93058 1.25791 0.95118 0.96478 1.01474 1.70029 1.39013 1.14819 1.32828 0.85514 0.77936 0.78271 0.79751 1.19140 1.20754 1.19753 1.18424 0.91150 0.87085 0.90706 1.20673 0.93638 0.98145 1.12549 1.21017 0.98946 0.91901 0.94152 1.18201 0.93494 0.89925 1.14233 1.24636 0.89856 0.98370 0.92133 1.75105 1.11216 1.08137 1.17360 1.46566 1.05881 1.05213 1.73465 1.21123 0.80880 0.91817 0.74903 1.90728 1.68612 1.35858 1.48104 1.21058 0.82665 0.89048 0.99222 1.22529 1.04692 1.00995 0.94746 1.22530 1.04687 1.01010 0.94788 1.86628 1.15271 1.38430 1.97387 1.21243 0.91198 0.98624 0.92426 1.20853 1.00774 0.89915 1.12525 0.93647 0.88755 0.91944 0.96697 0.97340 0.92415 0.89038 0.87823 0.81618 0.75501 0.88954 0.87273 0.93024 0.93123 0.87254 0.88963 0.74232 0.80652 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.00 10.22 127.77 1.31 4.31 16 2 N -0.62 -26.33 2.99 -726.38 -2.17 -28.50 16 3 C 0.26 13.79 4.94 85.63 0.42 14.22 16 4 C -0.54 -30.76 9.39 25.60 0.24 -30.52 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.61 5.46 84.65 0.46 1.07 16 7 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 8 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.23 9.21 6.56 38.34 0.25 9.46 16 13 C -0.23 -9.95 9.18 22.36 0.21 -9.74 16 14 C -0.04 -1.50 9.57 22.53 0.22 -1.29 16 15 C -0.15 -4.36 5.87 -20.13 -0.12 -4.48 16 16 C 0.16 3.54 10.74 87.40 0.94 4.48 16 17 N -0.31 -9.31 10.15 -52.21 -0.53 -9.84 16 18 N -0.57 -12.65 6.05 -173.51 -1.05 -13.70 16 19 C 0.53 14.68 6.67 87.66 0.59 15.26 16 20 O -0.56 -23.60 16.84 15.90 0.27 -23.33 16 21 C 0.13 1.98 1.25 -11.54 -0.01 1.97 16 22 C -0.17 -1.42 8.71 71.98 0.63 -0.79 16 23 C -0.17 -1.47 8.71 71.98 0.63 -0.84 16 24 O -0.57 -11.19 12.51 -129.95 -1.63 -12.81 16 25 C -0.01 -0.32 9.78 22.52 0.22 -0.10 16 26 C -0.22 -6.17 9.19 22.36 0.21 -5.96 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 2.23 6.18 -2.39 -0.01 2.22 16 29 H 0.06 1.96 7.89 -2.39 -0.02 1.95 16 30 H 0.02 0.83 7.89 -2.38 -0.02 0.81 16 31 H 0.01 0.50 6.19 -2.39 -0.01 0.49 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.09 4.72 6.12 -2.91 -0.02 4.70 16 34 H 0.10 4.34 7.55 -2.91 -0.02 4.31 16 35 H 0.17 1.70 8.02 -2.91 -0.02 1.68 16 36 H 0.40 4.54 7.49 -213.32 -1.60 2.94 16 37 H 0.09 0.36 7.56 -2.38 -0.02 0.34 16 38 H 0.11 0.19 8.14 -2.39 -0.02 0.18 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.09 0.38 7.57 -2.38 -0.02 0.36 16 43 H 0.41 2.88 9.05 -74.05 -0.67 2.21 16 44 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.15 3.32 6.12 -2.91 -0.02 3.30 16 Total: -1.00 -89.42 381.43 2.14 -87.28 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -1.24 Total: 12.02 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 6.18 Total: -2.97 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.46 Total: -107.61 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.36 Total: -36.15 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -89.42 2.14 -87.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785459597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.320 kcal (2) G-P(sol) polarization free energy of solvation -89.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds